RNA–Protein interactions for RNA: ENST00000376724.6

TRIM40-206, Transcript of tripartite motif containing 40, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene TRIM40, Length 2,006 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM40-206ENST00000376724 SNX27Q96L92 541 aa13.76□□□□□ -0.21
TRIM40-206ENST00000376724 AP1M1Q9BXS5 423 aa13.76□□□□□ -0.21
TRIM40-206ENST00000376724 BCO2Q9BYV7 579 aa13.76□□□□□ -0.21
TRIM40-206ENST00000376724 TRIM7Q9C029 511 aa13.76□□□□□ -0.21
TRIM40-206ENST00000376724 PLEKHA4Q9H4M7 779 aa13.76□□□□□ -0.21
TRIM40-206ENST00000376724 ANAPC7Q9UJX3 599 aa13.76□□□□□ -0.21
TRIM40-206ENST00000376724 RAB21Q9UL25 225 aa13.76□□□□□ -0.21
TRIM40-206ENST00000376724 CCDC151A5D8V7 595 aa13.76□□□□□ -0.21
TRIM40-206ENST00000376724 SPOPO43791 374 aa13.76□□□□□ -0.21
TRIM40-206ENST00000376724 MTA2O94776 668 aa13.76□□□□□ -0.21
TRIM40-206ENST00000376724 MYBL1P10243 752 aa13.76□□□□□ -0.21
TRIM40-206ENST00000376724 P4HA1P13674 534 aa13.76□□□□□ -0.21
TRIM40-206ENST00000376724 TNNC1P63316 161 aa13.76□□□□□ -0.21
TRIM40-206ENST00000376724 ZNF211Q13398 564 aaPredicted RBP13.76□□□□□ -0.21
TRIM40-206ENST00000376724 BRD3Q15059 726 aa13.76□□□□□ -0.21
TRIM40-206ENST00000376724 LIN9Q5TKA1 542 aa13.76□□□□□ -0.21
TRIM40-206ENST00000376724 DCAF12L1Q5VU92 463 aa13.76□□□□□ -0.21
TRIM40-206ENST00000376724 NT5DC4Q86YG4 428 aa13.76□□□□□ -0.21
TRIM40-206ENST00000376724 C1orf131Q8NDD1 294 aaKnown RBP13.76□□□□□ -0.21
TRIM40-206ENST00000376724 HDAC7Q8WUI4 952 aa13.76□□□□□ -0.21
TRIM40-206ENST00000376724 WNT8BQ93098 351 aa13.76□□□□□ -0.21
TRIM40-206ENST00000376724 C18orf25Q96B23 403 aaPredicted RBP13.76□□□□□ -0.21
TRIM40-206ENST00000376724 TRIM11Q96F44 468 aa13.76□□□□□ -0.21
TRIM40-206ENST00000376724 RNF39Q9H2S5 420 aa13.76□□□□□ -0.21
TRIM40-206ENST00000376724 PLEKHA5Q9HAU0 1116 aa13.76□□□□□ -0.21
TRIM40-206ENST00000376724 ARFGAP3Q9NP61 516 aa13.76□□□□□ -0.21
TRIM40-206ENST00000376724 TUBGCP4Q9UGJ1 667 aa13.76□□□□□ -0.21
TRIM40-206ENST00000376724 HMGXB4Q9UGU5 601 aa13.76□□□□□ -0.21
TRIM40-206ENST00000376724 NOC2LQ9Y3T9 749 aaKnown RBP13.76□□□□□ -0.21
TRIM40-206ENST00000376724 CDY2AQ9Y6F7 541 aa13.76□□□□□ -0.21
TRIM40-206ENST00000376724 CITO14578 2027 aa13.76□□□□□ -0.21
TRIM40-206ENST00000376724 DNAH12Q6ZR08 3092 aa13.75□□□□□ -0.21
TRIM40-206ENST00000376724 PGRMC1O00264 195 aaKnown RBP13.75□□□□□ -0.21
TRIM40-206ENST00000376724 MARCKSL1P49006 195 aa13.75□□□□□ -0.21
TRIM40-206ENST00000376724 MRPS6P82932 125 aaKnown RBP13.75□□□□□ -0.21
TRIM40-206ENST00000376724 TWF2Q6IBS0 349 aaKnown RBP13.75□□□□□ -0.21
TRIM40-206ENST00000376724 C8orf74Q6P047 294 aa13.75□□□□□ -0.21
TRIM40-206ENST00000376724 DPH6Q7L8W6 267 aa13.75□□□□□ -0.21
TRIM40-206ENST00000376724 FAM228AQ86W67 206 aa13.75□□□□□ -0.21
TRIM40-206ENST00000376724 KLHL7Q8IXQ5 586 aa13.75□□□□□ -0.21
TRIM40-206ENST00000376724 ACTRT1Q8TDG2 376 aa13.75□□□□□ -0.21
TRIM40-206ENST00000376724 ALG3Q92685 438 aa13.75□□□□□ -0.21
TRIM40-206ENST00000376724 KRT35Q92764 455 aa13.75□□□□□ -0.21
TRIM40-206ENST00000376724 TWNKQ96RR1 684 aa13.75□□□□□ -0.21
TRIM40-206ENST00000376724 KRT12Q99456 494 aa13.75□□□□□ -0.21
TRIM40-206ENST00000376724 BUD13Q9BRD0 619 aaKnown RBP eCLIP13.75□□□□□ -0.21
TRIM40-206ENST00000376724 CREBZFQ9NS37 354 aa13.75□□□□□ -0.21
TRIM40-206ENST00000376724 SRRDQ9UH36 339 aa13.75□□□□□ -0.21
TRIM40-206ENST00000376724 SPDYE4A6NLX3 237 aa13.74□□□□□ -0.21
TRIM40-206ENST00000376724 PPEF2O14830 753 aa13.74□□□□□ -0.21
TRIM40-206ENST00000376724 GJB6O95452 261 aa13.74□□□□□ -0.21
TRIM40-206ENST00000376724 FGGP02679 453 aa13.74□□□□□ -0.21
TRIM40-206ENST00000376724 RAD23BP54727 409 aa13.74□□□□□ -0.21
TRIM40-206ENST00000376724 MYO1EQ12965 1108 aa13.74□□□□□ -0.21
TRIM40-206ENST00000376724 NFX1Q12986 1120 aaKnown RBP13.74□□□□□ -0.21
TRIM40-206ENST00000376724 UBXN11Q5T124 520 aa13.74□□□□□ -0.21
TRIM40-206ENST00000376724 RSPH3Q86UC2 560 aa13.74□□□□□ -0.21
TRIM40-206ENST00000376724 SESTD1Q86VW0 696 aa13.74□□□□□ -0.21
TRIM40-206ENST00000376724 UBL4BQ8N7F7 174 aa13.74□□□□□ -0.21
TRIM40-206ENST00000376724 RPS6KC1Q96S38 1066 aa13.74□□□□□ -0.21
TRIM40-206ENST00000376724 AVENQ9NQS1 362 aaPredicted RBP13.74□□□□□ -0.21
TRIM40-206ENST00000376724 TRIP11Q15643 1979 aa13.74□□□□□ -0.21
TRIM40-206ENST00000376724 TARSL2A2RTX5 802 aaKnown RBP13.74□□□□□ -0.21
TRIM40-206ENST00000376724 MIF4GDA9UHW6 222 aaKnown RBP13.74□□□□□ -0.21
TRIM40-206ENST00000376724 KRIT1O00522 736 aa13.74□□□□□ -0.21
TRIM40-206ENST00000376724 ERLIN1O75477 346 aa13.74□□□□□ -0.21
TRIM40-206ENST00000376724 HOXD10P28358 340 aa13.74□□□□□ -0.21
TRIM40-206ENST00000376724 AADACL2Q6P093 401 aa13.74□□□□□ -0.21
TRIM40-206ENST00000376724 WDR93Q6P2C0 686 aa13.74□□□□□ -0.21
TRIM40-206ENST00000376724 ALKAL1Q6UXT8 129 aa13.74□□□□□ -0.21
TRIM40-206ENST00000376724 ADAT2Q7Z6V5 191 aaKnown RBP13.74□□□□□ -0.21
TRIM40-206ENST00000376724 PHF13Q86YI8 300 aaPredicted RBP13.74□□□□□ -0.21
TRIM40-206ENST00000376724 REM2Q8IYK8 340 aaPredicted RBP13.74□□□□□ -0.21
TRIM40-206ENST00000376724 TMEM35BQ8NCS4 154 aa13.74□□□□□ -0.21
TRIM40-206ENST00000376724 BEST2Q8NFU1 509 aa13.74□□□□□ -0.21
TRIM40-206ENST00000376724 RAET1EQ8TD07 263 aa13.74□□□□□ -0.21
TRIM40-206ENST00000376724 WHAMMQ8TF30 809 aa13.74□□□□□ -0.21
TRIM40-206ENST00000376724 RNPC3Q96LT9 517 aaKnown RBP13.74□□□□□ -0.21
TRIM40-206ENST00000376724 ELOVL4Q9GZR5 314 aa13.74□□□□□ -0.21
TRIM40-206ENST00000376724 VRTNQ9H8Y1 702 aa13.74□□□□□ -0.21
TRIM40-206ENST00000376724 DMGDHQ9UI17 866 aaKnown RBP13.74□□□□□ -0.21
TRIM40-206ENST00000376724 IPPQ9Y573 584 aa13.74□□□□□ -0.21
TRIM40-206ENST00000376724 CEP83Q9Y592 693 aa13.74□□□□□ -0.21
TRIM40-206ENST00000376724 TRPV2Q9Y5S1 764 aa13.74□□□□□ -0.21
TRIM40-206ENST00000376724 MYO1FO00160 1098 aa13.73□□□□□ -0.21
TRIM40-206ENST00000376724 TLR3O15455 904 aaKnown RBP13.73□□□□□ -0.21
TRIM40-206ENST00000376724 CILPO75339 1184 aa13.73□□□□□ -0.21
TRIM40-206ENST00000376724 RPS6KA5O75582 802 aa13.73□□□□□ -0.21
TRIM40-206ENST00000376724 MAMLD1Q13495 774 aa13.73□□□□□ -0.21
TRIM40-206ENST00000376724 LONRF2Q1L5Z9 754 aa13.73□□□□□ -0.21
TRIM40-206ENST00000376724 DENND1BQ6P3S1 775 aa13.73□□□□□ -0.21
TRIM40-206ENST00000376724 RASGEF1CQ8N431 466 aa13.73□□□□□ -0.21
TRIM40-206ENST00000376724 SLC4A11Q8NBS3 891 aa13.73□□□□□ -0.21
TRIM40-206ENST00000376724 TMEM176AQ96HP8 235 aa13.73□□□□□ -0.21
TRIM40-206ENST00000376724 HEXIM2Q96MH2 286 aaKnown RBP13.73□□□□□ -0.21
TRIM40-206ENST00000376724 CYP3A43Q9HB55 503 aa13.73□□□□□ -0.21
TRIM40-206ENST00000376724 CNTN3Q9P232 1028 aa13.73□□□□□ -0.21
TRIM40-206ENST00000376724 DERAQ9Y315 318 aa13.73□□□□□ -0.21
TRIM40-206ENST00000376724 SNX9Q9Y5X1 595 aa13.73□□□□□ -0.21
TRIM40-206ENST00000376724 SCN10AQ9Y5Y9 1956 aa13.73□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms