RNA–Protein interactions for RNA: ENST00000366304.3

HMGB1P39-201, Transcript of high mobility group box 1 pseudogene 39, humanhuman

BASIC

Gene HMGB1P39, Length 880 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P39-201ENST00000366304 TMEM196Q5HYL7 178 aa9.36□□□□□ -0.91
HMGB1P39-201ENST00000366304 CYP4A22Q5TCH4 519 aa9.36□□□□□ -0.91
HMGB1P39-201ENST00000366304 DAB2IPQ5VWQ8 1189 aa9.36□□□□□ -0.91
HMGB1P39-201ENST00000366304 RNF19BQ6ZMZ0 732 aa9.36□□□□□ -0.91
HMGB1P39-201ENST00000366304 ARID3BQ8IVW6 561 aaPredicted RBP9.36□□□□□ -0.91
HMGB1P39-201ENST00000366304 SYNPOQ8N3V7 929 aa9.36□□□□□ -0.91
HMGB1P39-201ENST00000366304 BICD2Q8TD16 824 aa9.36□□□□□ -0.91
HMGB1P39-201ENST00000366304 CCDC12Q8WUD4 166 aaPredicted RBP9.36□□□□□ -0.91
HMGB1P39-201ENST00000366304 BSNDQ8WZ55 320 aa9.36□□□□□ -0.91
HMGB1P39-201ENST00000366304 ESYT1Q9BSJ8 1104 aa9.36□□□□□ -0.91
HMGB1P39-201ENST00000366304 PRR14Q9BWN1 585 aa9.36□□□□□ -0.91
HMGB1P39-201ENST00000366304 SMG9Q9H0W8 520 aaKnown RBP9.36□□□□□ -0.91
HMGB1P39-201ENST00000366304 POLR3FQ9H1D9 316 aaPredicted RBP9.36□□□□□ -0.91
HMGB1P39-201ENST00000366304 FZD8Q9H461 694 aa9.36□□□□□ -0.91
HMGB1P39-201ENST00000366304 TMEM9BQ9NQ34 198 aa9.36□□□□□ -0.91
HMGB1P39-201ENST00000366304 DAXXQ9UER7 740 aaPredicted RBP9.36□□□□□ -0.91
HMGB1P39-201ENST00000366304 NAP1L2Q9ULW6 460 aaPredicted RBP9.36□□□□□ -0.91
HMGB1P39-201ENST00000366304 GDAQ9Y2T3 454 aa9.36□□□□□ -0.91
HMGB1P39-201ENST00000366304 PCDHB3Q9Y5E6 796 aa9.36□□□□□ -0.91
HMGB1P39-201ENST00000366304 NID2Q14112 1375 aa9.36□□□□□ -0.91
HMGB1P39-201ENST00000366304 FAM221BA6H8Z2 402 aa9.35□□□□□ -0.91
HMGB1P39-201ENST00000366304 BCKDHBP21953 392 aa9.35□□□□□ -0.91
HMGB1P39-201ENST00000366304 U2AF2P26368 475 aaKnown RBP eCLIP9.35□□□□□ -0.91
HMGB1P39-201ENST00000366304 ELF1P32519 619 aa9.35□□□□□ -0.91
HMGB1P39-201ENST00000366304 RCAN1P53805 252 aa9.35□□□□□ -0.91
HMGB1P39-201ENST00000366304 FGD1P98174 961 aa9.35□□□□□ -0.91
HMGB1P39-201ENST00000366304 TFDP1Q14186 410 aa9.35□□□□□ -0.91
HMGB1P39-201ENST00000366304 EPHA7Q15375 998 aa9.35□□□□□ -0.91
HMGB1P39-201ENST00000366304 INF2Q27J81 1249 aa9.35□□□□□ -0.91
HMGB1P39-201ENST00000366304 KMT5BQ4FZB7 885 aa9.35□□□□□ -0.91
HMGB1P39-201ENST00000366304 CDCA2Q69YH5 1023 aaPredicted RBP9.35□□□□□ -0.91
HMGB1P39-201ENST00000366304 GAREM2Q75VX8 874 aa9.35□□□□□ -0.91
HMGB1P39-201ENST00000366304 PIP4P1Q86T03 277 aa9.35□□□□□ -0.91
HMGB1P39-201ENST00000366304 YAF2Q8IY57 180 aa9.35□□□□□ -0.91
HMGB1P39-201ENST00000366304 EXOC8Q8IYI6 725 aa9.35□□□□□ -0.91
HMGB1P39-201ENST00000366304 CHCHD4Q8N4Q1 142 aa9.35□□□□□ -0.91
HMGB1P39-201ENST00000366304 DAGLBQ8NCG7 672 aa9.35□□□□□ -0.91
HMGB1P39-201ENST00000366304 RIN3Q8TB24 985 aa9.35□□□□□ -0.91
HMGB1P39-201ENST00000366304 ZMAT2Q96NC0 199 aaKnown RBP9.35□□□□□ -0.91
HMGB1P39-201ENST00000366304 AIFM3Q96NN9 605 aa9.35□□□□□ -0.91
HMGB1P39-201ENST00000366304 TMEM209Q96SK2 561 aa9.35□□□□□ -0.91
HMGB1P39-201ENST00000366304 POLR3CQ9BUI4 534 aaPredicted RBP9.35□□□□□ -0.91
HMGB1P39-201ENST00000366304 SLC26A6Q9BXS9 759 aa9.35□□□□□ -0.91
HMGB1P39-201ENST00000366304 SLITRK6Q9H5Y7 841 aa9.35□□□□□ -0.91
HMGB1P39-201ENST00000366304 NCOA5Q9HCD5 579 aaKnown RBP9.35□□□□□ -0.91
HMGB1P39-201ENST00000366304 HPS4Q9NQG7 708 aa9.35□□□□□ -0.91
HMGB1P39-201ENST00000366304 ASAH2Q9NR71 780 aa9.35□□□□□ -0.91
HMGB1P39-201ENST00000366304 CACNA2D2Q9NY47 1150 aa9.35□□□□□ -0.91
HMGB1P39-201ENST00000366304 PCDHA4Q9UN74 947 aa9.35□□□□□ -0.91
HMGB1P39-201ENST00000366304 SLC8A2Q9UPR5 921 aa9.35□□□□□ -0.91
HMGB1P39-201ENST00000366304 APC2O95996 2303 aa9.34□□□□□ -0.91
HMGB1P39-201ENST00000366304 ASCC3Q8N3C0 2202 aaKnown RBP9.34□□□□□ -0.91
HMGB1P39-201ENST00000366304 HECTD1Q9ULT8 2610 aa9.34□□□□□ -0.91
HMGB1P39-201ENST00000366304 SMIM28A0A1B0GU29 152 aa9.34□□□□□ -0.91
HMGB1P39-201ENST00000366304 PRB1P04280 392 aa9.34□□□□□ -0.91
HMGB1P39-201ENST00000366304 OR4Q2P0C623 313 aa9.34□□□□□ -0.91
HMGB1P39-201ENST00000366304 NLRP5P59047 1200 aa9.34□□□□□ -0.91
HMGB1P39-201ENST00000366304 SIM1P81133 766 aaPredicted RBP9.34□□□□□ -0.91
HMGB1P39-201ENST00000366304 SCAPQ12770 1279 aa9.34□□□□□ -0.91
HMGB1P39-201ENST00000366304 TRIM68Q6AZZ1 485 aa9.34□□□□□ -0.91
HMGB1P39-201ENST00000366304 NCAPH2Q6IBW4 605 aa9.34□□□□□ -0.91
HMGB1P39-201ENST00000366304 C1orf228Q6PIY5 440 aa9.34□□□□□ -0.91
HMGB1P39-201ENST00000366304 MOXD1Q6UVY6 613 aa9.34□□□□□ -0.91
HMGB1P39-201ENST00000366304 MAEAQ7L5Y9 396 aa9.34□□□□□ -0.91
HMGB1P39-201ENST00000366304 OTUD6AQ7L8S5 288 aa9.34□□□□□ -0.91
HMGB1P39-201ENST00000366304 TPH2Q8IWU9 490 aa9.34□□□□□ -0.91
HMGB1P39-201ENST00000366304 BLIDQ8IZY5 108 aa9.34□□□□□ -0.91
HMGB1P39-201ENST00000366304 TTC9BQ8N6N2 239 aa9.34□□□□□ -0.91
HMGB1P39-201ENST00000366304 RDH13Q8NBN7 331 aa9.34□□□□□ -0.91
HMGB1P39-201ENST00000366304 PIGOQ8TEQ8 1089 aa9.34□□□□□ -0.91
HMGB1P39-201ENST00000366304 CRELD1Q96HD1 420 aa9.34□□□□□ -0.91
HMGB1P39-201ENST00000366304 ZNF512Q96ME7 567 aaPredicted RBP9.34□□□□□ -0.91
HMGB1P39-201ENST00000366304 CCDC113Q9H0I3 377 aa9.34□□□□□ -0.91
HMGB1P39-201ENST00000366304 SLKQ9H2G2 1235 aaPredicted RBP9.34□□□□□ -0.91
HMGB1P39-201ENST00000366304 ZSWIM4Q9H7M6 989 aa9.34□□□□□ -0.91
HMGB1P39-201ENST00000366304 FSCN3Q9NQT6 498 aa9.34□□□□□ -0.91
HMGB1P39-201ENST00000366304 AFF4Q9UHB7 1163 aaKnown RBP9.34□□□□□ -0.91
HMGB1P39-201ENST00000366304 YIPF1Q9Y548 306 aa9.34□□□□□ -0.91
HMGB1P39-201ENST00000366304 ZNF462Q96JM2 2506 aa9.34□□□□□ -0.91
HMGB1P39-201ENST00000366304 LRRIQ4A6NIV6 560 aa9.33□□□□□ -0.92
HMGB1P39-201ENST00000366304 KHNYNO15037 678 aaKnown RBP9.33□□□□□ -0.92
HMGB1P39-201ENST00000366304 DTNBO60941 627 aa9.33□□□□□ -0.92
HMGB1P39-201ENST00000366304 SOAT2O75908 522 aa9.33□□□□□ -0.92
HMGB1P39-201ENST00000366304 RARRES1P49788 294 aa9.33□□□□□ -0.92
HMGB1P39-201ENST00000366304 CDR1P51861 262 aa9.33□□□□□ -0.92
HMGB1P39-201ENST00000366304 ELF2Q15723 593 aa9.33□□□□□ -0.92
HMGB1P39-201ENST00000366304 FAM187BQ17R55 369 aa9.33□□□□□ -0.92
HMGB1P39-201ENST00000366304 CTXN3Q4LDR2 81 aa9.33□□□□□ -0.92
HMGB1P39-201ENST00000366304 ARHGAP29Q52LW3 1261 aa9.33□□□□□ -0.92
HMGB1P39-201ENST00000366304 EARS2Q5JPH6 523 aaKnown RBP9.33□□□□□ -0.92
HMGB1P39-201ENST00000366304 NT5DC1Q5TFE4 455 aa9.33□□□□□ -0.92
HMGB1P39-201ENST00000366304 TPGS2Q68CL5 300 aa9.33□□□□□ -0.92
HMGB1P39-201ENST00000366304 DIEXFQ68CQ4 756 aaKnown RBP9.33□□□□□ -0.92
HMGB1P39-201ENST00000366304 PMS2CLQ68D20 193 aa9.33□□□□□ -0.92
HMGB1P39-201ENST00000366304 IQCEQ6IPM2 695 aa9.33□□□□□ -0.92
HMGB1P39-201ENST00000366304 BLOC1S3Q6QNY0 202 aa9.33□□□□□ -0.92
HMGB1P39-201ENST00000366304 ALKAL1Q6UXT8 129 aa9.33□□□□□ -0.92
HMGB1P39-201ENST00000366304 Q6ZUG5 572 aa9.33□□□□□ -0.92
HMGB1P39-201ENST00000366304 CAMKK1Q8N5S9 505 aa9.33□□□□□ -0.92
HMGB1P39-201ENST00000366304 CEP120Q8N960 986 aa9.33□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 63.3 ms