RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 RHPN2Q8IUC4 686 aa22.1■■□□□ 1.13
CCDC88B-203ENST00000359902 CENPTQ96BT3 561 aa22.1■■□□□ 1.13
CCDC88B-203ENST00000359902 MPHOSPH6Q99547 160 aaKnown RBP22.1■■□□□ 1.13
CCDC88B-203ENST00000359902 C2orf40Q9H1Z8 148 aa22.1■■□□□ 1.13
CCDC88B-203ENST00000359902 ADAM7Q9H2U9 754 aa22.1■■□□□ 1.13
CCDC88B-203ENST00000359902 CDC42EP4Q9H3Q1 356 aaKnown RBP22.1■■□□□ 1.13
CCDC88B-203ENST00000359902 ATXN2Q99700 1313 aaKnown RBP22.1■■□□□ 1.13
CCDC88B-203ENST00000359902 CXCL11O14625 94 aa22.09■■□□□ 1.13
CCDC88B-203ENST00000359902 AGTP01019 485 aa22.09■■□□□ 1.13
CCDC88B-203ENST00000359902 HOXC6P09630 235 aa22.09■■□□□ 1.13
CCDC88B-203ENST00000359902 PROZP22891 400 aa22.09■■□□□ 1.13
CCDC88B-203ENST00000359902 BRD2P25440 801 aaKnown RBP22.09■■□□□ 1.13
CCDC88B-203ENST00000359902 CHKAP35790 457 aa22.09■■□□□ 1.13
CCDC88B-203ENST00000359902 ITGA8P53708 1063 aa22.09■■□□□ 1.13
CCDC88B-203ENST00000359902 TNFAIP8L3Q5GJ75 292 aa22.09■■□□□ 1.13
CCDC88B-203ENST00000359902 TSHZ1Q6ZSZ6 1077 aa22.09■■□□□ 1.13
CCDC88B-203ENST00000359902 CCDC114Q96M63 670 aa22.09■■□□□ 1.13
CCDC88B-203ENST00000359902 SPATA33Q96N06 139 aa22.09■■□□□ 1.13
CCDC88B-203ENST00000359902 DDX23Q9BUQ8 820 aaKnown RBP22.09■■□□□ 1.13
CCDC88B-203ENST00000359902 PTPRHQ9HD43 1115 aa22.09■■□□□ 1.13
CCDC88B-203ENST00000359902 DNAJC25-GNG10A0A024R161 153 aa22.09■■□□□ 1.13
CCDC88B-203ENST00000359902 TCRBV5S1A1TA0A578 114 aa22.09■■□□□ 1.13
CCDC88B-203ENST00000359902 RASGRF2O14827 1237 aa22.09■■□□□ 1.13
CCDC88B-203ENST00000359902 LSM8O95777 96 aaKnown RBP22.09■■□□□ 1.13
CCDC88B-203ENST00000359902 GJC1P36383 396 aa22.09■■□□□ 1.13
CCDC88B-203ENST00000359902 SLCO1A2P46721 670 aa22.09■■□□□ 1.13
CCDC88B-203ENST00000359902 CDR1P51861 262 aa22.09■■□□□ 1.13
CCDC88B-203ENST00000359902 TFAMQ00059 246 aaKnown RBP22.09■■□□□ 1.13
CCDC88B-203ENST00000359902 ZNF394Q53GI3 561 aa22.09■■□□□ 1.13
CCDC88B-203ENST00000359902 TRAPPC12Q8WVT3 735 aa22.09■■□□□ 1.13
CCDC88B-203ENST00000359902 PPM1EQ8WY54 764 aa22.09■■□□□ 1.13
CCDC88B-203ENST00000359902 FAM118BQ9BPY3 351 aa22.09■■□□□ 1.13
CCDC88B-203ENST00000359902 GGA2Q9UJY4 613 aa22.09■■□□□ 1.13
CCDC88B-203ENST00000359902 CALB1P05937 261 aa22.08■■□□□ 1.13
CCDC88B-203ENST00000359902 GJB1P08034 283 aa22.08■■□□□ 1.13
CCDC88B-203ENST00000359902 WEE2P0C1S8 567 aa22.08■■□□□ 1.13
CCDC88B-203ENST00000359902 ATF2P15336 505 aa22.08■■□□□ 1.13
CCDC88B-203ENST00000359902 ADCY8P40145 1251 aa22.08■■□□□ 1.13
CCDC88B-203ENST00000359902 TRPC3Q13507 836 aa22.08■■□□□ 1.13
CCDC88B-203ENST00000359902 AUHQ13825 339 aaKnown RBP22.08■■□□□ 1.13
CCDC88B-203ENST00000359902 ATP13A4Q4VNC1 1196 aa22.08■■□□□ 1.13
CCDC88B-203ENST00000359902 ERMARDQ5T6L9 678 aa22.08■■□□□ 1.13
CCDC88B-203ENST00000359902 CCDC62Q6P9F0 684 aa22.08■■□□□ 1.13
CCDC88B-203ENST00000359902 MPZL3Q6UWV2 235 aa22.08■■□□□ 1.13
CCDC88B-203ENST00000359902 MICALCLQ6ZW33 695 aa22.08■■□□□ 1.13
CCDC88B-203ENST00000359902 DHX37Q8IY37 1157 aaKnown RBP22.08■■□□□ 1.13
CCDC88B-203ENST00000359902 WDTC1Q8N5D0 677 aa22.08■■□□□ 1.13
CCDC88B-203ENST00000359902 ZNF668Q96K58 619 aaPredicted RBP22.08■■□□□ 1.13
CCDC88B-203ENST00000359902 SCLT1Q96NL6 688 aa22.08■■□□□ 1.13
CCDC88B-203ENST00000359902 FZD8Q9H461 694 aa22.08■■□□□ 1.13
CCDC88B-203ENST00000359902 AGTPBP1Q9UPW5 1226 aa22.08■■□□□ 1.13
CCDC88B-203ENST00000359902 ACKR2O00590 384 aa22.08■■□□□ 1.12
CCDC88B-203ENST00000359902 MEFVO15553 781 aaPredicted RBP22.08■■□□□ 1.12
CCDC88B-203ENST00000359902 TCF4P15884 667 aa22.08■■□□□ 1.12
CCDC88B-203ENST00000359902 CAV1Q03135 178 aa22.08■■□□□ 1.12
CCDC88B-203ENST00000359902 ZNF252P-AS1Q0IIN9 211 aa22.08■■□□□ 1.12
CCDC88B-203ENST00000359902 QPCTQ16769 361 aa22.08■■□□□ 1.12
CCDC88B-203ENST00000359902 TMEM63BQ5T3F8 832 aa22.08■■□□□ 1.12
CCDC88B-203ENST00000359902 MOB2Q70IA6 237 aa22.08■■□□□ 1.12
CCDC88B-203ENST00000359902 TADA2BQ86TJ2 420 aa22.08■■□□□ 1.12
CCDC88B-203ENST00000359902 THNSL1Q8IYQ7 743 aa22.08■■□□□ 1.12
CCDC88B-203ENST00000359902 TMEM35BQ8NCS4 154 aa22.08■■□□□ 1.12
CCDC88B-203ENST00000359902 TFAP2BQ92481 460 aa22.08■■□□□ 1.12
CCDC88B-203ENST00000359902 COPS5Q92905 334 aa22.08■■□□□ 1.12
CCDC88B-203ENST00000359902 XPO6Q96QU8 1125 aaKnown RBP22.08■■□□□ 1.12
CCDC88B-203ENST00000359902 ROPN1BQ9BZX4 212 aaPredicted RBP22.08■■□□□ 1.12
CCDC88B-203ENST00000359902 XYLT2Q9H1B5 865 aa22.08■■□□□ 1.12
CCDC88B-203ENST00000359902 ROPN1Q9HAT0 212 aaPredicted RBP22.08■■□□□ 1.12
CCDC88B-203ENST00000359902 ANAPC5Q9UJX4 755 aa22.08■■□□□ 1.12
CCDC88B-203ENST00000359902 NFX1Q12986 1120 aaKnown RBP22.07■■□□□ 1.12
CCDC88B-203ENST00000359902 ATF7IP2Q5U623 682 aa22.07■■□□□ 1.12
CCDC88B-203ENST00000359902 GPAT2Q6NUI2 795 aa22.07■■□□□ 1.12
CCDC88B-203ENST00000359902 FBXO16Q8IX29 292 aaPredicted RBP22.07■■□□□ 1.12
CCDC88B-203ENST00000359902 TRAIPQ9BWF2 469 aa22.07■■□□□ 1.12
CCDC88B-203ENST00000359902 SRCAPQ6ZRS2 3230 aa22.07■■□□□ 1.12
CCDC88B-203ENST00000359902 SPDYE5A6NIY4 337 aa22.07■■□□□ 1.12
CCDC88B-203ENST00000359902 B4GALT5O43286 388 aa22.07■■□□□ 1.12
CCDC88B-203ENST00000359902 CHN1P15882 459 aa22.07■■□□□ 1.12
CCDC88B-203ENST00000359902 MFSD5Q6N075 450 aa22.07■■□□□ 1.12
CCDC88B-203ENST00000359902 RCOR2Q8IZ40 523 aa22.07■■□□□ 1.12
CCDC88B-203ENST00000359902 NLRP4Q96MN2 994 aa22.07■■□□□ 1.12
CCDC88B-203ENST00000359902 MMP19Q99542 508 aa22.07■■□□□ 1.12
CCDC88B-203ENST00000359902 ZNF518BQ9C0D4 1074 aa22.07■■□□□ 1.12
CCDC88B-203ENST00000359902 KLHL11Q9NVR0 708 aa22.07■■□□□ 1.12
CCDC88B-203ENST00000359902 DDX20Q9UHI6 824 aaKnown RBP22.07■■□□□ 1.12
CCDC88B-203ENST00000359902 B4GALT4O60513 344 aa22.06■■□□□ 1.12
CCDC88B-203ENST00000359902 ACSL3O95573 720 aa22.06■■□□□ 1.12
CCDC88B-203ENST00000359902 ASPAP45381 313 aa22.06■■□□□ 1.12
CCDC88B-203ENST00000359902 VPS41P49754 854 aa22.06■■□□□ 1.12
CCDC88B-203ENST00000359902 OSTNP61366 133 aa22.06■■□□□ 1.12
CCDC88B-203ENST00000359902 KCTD2Q14681 263 aa22.06■■□□□ 1.12
CCDC88B-203ENST00000359902 ZNF699Q32M78 642 aa22.06■■□□□ 1.12
CCDC88B-203ENST00000359902 EEF1DP3Q658K8 133 aa22.06■■□□□ 1.12
CCDC88B-203ENST00000359902 C6orf89Q6UWU4 347 aa22.06■■□□□ 1.12
CCDC88B-203ENST00000359902 YTHDF3Q7Z739 585 aaKnown RBP22.06■■□□□ 1.12
CCDC88B-203ENST00000359902 ANKRD13AQ8IZ07 590 aa22.06■■□□□ 1.12
CCDC88B-203ENST00000359902 ZBTB10Q96DT7 871 aa22.06■■□□□ 1.12
CCDC88B-203ENST00000359902 MCEEQ96PE7 176 aa22.06■■□□□ 1.12
CCDC88B-203ENST00000359902 SELENOSQ9BQE4 189 aa22.06■■□□□ 1.12
CCDC88B-203ENST00000359902 JPH2Q9BR39 696 aaPredicted RBP22.06■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms