RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 MEI1Q5TIA1 1274 aa20.45■□□□□ 0.86
CCDC88B-202ENST00000356786 IZUMO2Q6UXV1 221 aa20.45■□□□□ 0.86
CCDC88B-202ENST00000356786 RBBP8NLQ8NC74 664 aaPredicted RBP20.45■□□□□ 0.86
CCDC88B-202ENST00000356786 AENQ8WTP8 325 aaKnown RBP20.45■□□□□ 0.86
CCDC88B-202ENST00000356786 GID8Q9NWU2 228 aa20.45■□□□□ 0.86
CCDC88B-202ENST00000356786 DDHD1Q8NEL9 900 aa20.45■□□□□ 0.86
CCDC88B-202ENST00000356786 SNX19Q92543 992 aa20.45■□□□□ 0.86
CCDC88B-202ENST00000356786 FAM49AQ9H0Q0 323 aaPredicted RBP20.45■□□□□ 0.86
CCDC88B-202ENST00000356786 COL15A1P39059 1388 aa20.45■□□□□ 0.86
CCDC88B-202ENST00000356786 TROAPQ12815 778 aa20.45■□□□□ 0.86
CCDC88B-202ENST00000356786 TBX2Q13207 712 aaPredicted RBP20.45■□□□□ 0.86
CCDC88B-202ENST00000356786 DPP9Q86TI2 863 aa20.45■□□□□ 0.86
CCDC88B-202ENST00000356786 PLD3Q8IV08 490 aa20.45■□□□□ 0.86
CCDC88B-202ENST00000356786 TASP1Q9H6P5 420 aa20.45■□□□□ 0.86
CCDC88B-202ENST00000356786 HACD3Q9P035 362 aa20.45■□□□□ 0.86
CCDC88B-202ENST00000356786 PTPN4P29074 926 aa20.44■□□□□ 0.86
CCDC88B-202ENST00000356786 CRKP46108 304 aa20.44■□□□□ 0.86
CCDC88B-202ENST00000356786 RFX5P48382 616 aaPredicted RBP20.44■□□□□ 0.86
CCDC88B-202ENST00000356786 ACOT2P49753 483 aa20.44■□□□□ 0.86
CCDC88B-202ENST00000356786 NME3Q13232 169 aa20.44■□□□□ 0.86
CCDC88B-202ENST00000356786 TTC39BQ5VTQ0 682 aaPredicted RBP20.44■□□□□ 0.86
CCDC88B-202ENST00000356786 TTC33Q6PID6 262 aaPredicted RBP20.44■□□□□ 0.86
CCDC88B-202ENST00000356786 ZKSCAN4Q969J2 545 aaPredicted RBP20.44■□□□□ 0.86
CCDC88B-202ENST00000356786 ARHGEF28Q8N1W1 1705 aaKnown RBP20.44■□□□□ 0.86
CCDC88B-202ENST00000356786 SKOR1P84550 965 aa20.44■□□□□ 0.86
CCDC88B-202ENST00000356786 PLOD1Q02809 727 aaPredicted RBP20.44■□□□□ 0.86
CCDC88B-202ENST00000356786 ZNF543Q08ER8 600 aa20.44■□□□□ 0.86
CCDC88B-202ENST00000356786 TRIM16LQ309B1 348 aa20.44■□□□□ 0.86
CCDC88B-202ENST00000356786 C6orf10Q5SRN2 563 aa20.44■□□□□ 0.86
CCDC88B-202ENST00000356786 PCYOX1LQ8NBM8 494 aa20.44■□□□□ 0.86
CCDC88B-202ENST00000356786 CCDC78A2IDD5 438 aa20.44■□□□□ 0.86
CCDC88B-202ENST00000356786 SMAPO00193 183 aa20.44■□□□□ 0.86
CCDC88B-202ENST00000356786 MYL2P10916 166 aa20.44■□□□□ 0.86
CCDC88B-202ENST00000356786 HLA-DPA1P20036 260 aa20.44■□□□□ 0.86
CCDC88B-202ENST00000356786 USP10Q14694 798 aaKnown RBP20.44■□□□□ 0.86
CCDC88B-202ENST00000356786 LAYNQ6UX15 382 aa20.44■□□□□ 0.86
CCDC88B-202ENST00000356786 PPIL6Q8IXY8 311 aa20.44■□□□□ 0.86
CCDC88B-202ENST00000356786 ZNF555Q8NEP9 628 aa20.44■□□□□ 0.86
CCDC88B-202ENST00000356786 CHCHD3Q9NX63 227 aaKnown RBP20.44■□□□□ 0.86
CCDC88B-202ENST00000356786 PAK5Q9P286 719 aa20.44■□□□□ 0.86
CCDC88B-202ENST00000356786 FXR2P51116 673 aaKnown RBP eCLIP20.44■□□□□ 0.86
CCDC88B-202ENST00000356786 ZNF844Q08AG5 666 aa20.44■□□□□ 0.86
CCDC88B-202ENST00000356786 SETD3Q86TU7 594 aaPredicted RBP20.44■□□□□ 0.86
CCDC88B-202ENST00000356786 LRRC6Q86X45 466 aa20.44■□□□□ 0.86
CCDC88B-202ENST00000356786 ANKRD27Q96NW4 1050 aa20.44■□□□□ 0.86
CCDC88B-202ENST00000356786 MTMR4Q9NYA4 1195 aa20.44■□□□□ 0.86
CCDC88B-202ENST00000356786 NARFQ9UHQ1 456 aa20.44■□□□□ 0.86
CCDC88B-202ENST00000356786 ITGA4P13612 1032 aa20.43■□□□□ 0.86
CCDC88B-202ENST00000356786 GFAPP14136 432 aa20.43■□□□□ 0.86
CCDC88B-202ENST00000356786 PON1P27169 355 aa20.43■□□□□ 0.86
CCDC88B-202ENST00000356786 NUDT2P50583 147 aa20.43■□□□□ 0.86
CCDC88B-202ENST00000356786 DDI1Q8WTU0 396 aa20.43■□□□□ 0.86
CCDC88B-202ENST00000356786 MRPL4Q9BYD3 311 aaKnown RBP20.43■□□□□ 0.86
CCDC88B-202ENST00000356786 COG4Q9H9E3 785 aa20.43■□□□□ 0.86
CCDC88B-202ENST00000356786 METTL5Q9NRN9 209 aaKnown RBP20.43■□□□□ 0.86
CCDC88B-202ENST00000356786 ZBTB39O15060 712 aa20.43■□□□□ 0.86
CCDC88B-202ENST00000356786 CLPTM1O96005 669 aa20.43■□□□□ 0.86
CCDC88B-202ENST00000356786 CALB2P22676 271 aa20.43■□□□□ 0.86
CCDC88B-202ENST00000356786 SERPINB1P30740 379 aa20.43■□□□□ 0.86
CCDC88B-202ENST00000356786 YWHABP31946 246 aaKnown RBP20.43■□□□□ 0.86
CCDC88B-202ENST00000356786 ST3GAL1Q11201 340 aa20.43■□□□□ 0.86
CCDC88B-202ENST00000356786 TSEN2Q8NCE0 465 aaKnown RBP20.43■□□□□ 0.86
CCDC88B-202ENST00000356786 TDRD3Q9H7E2 651 aaKnown RBP20.43■□□□□ 0.86
CCDC88B-202ENST00000356786 KBTBD4Q9NVX7 518 aa20.43■□□□□ 0.86
CCDC88B-202ENST00000356786 WDR35Q9P2L0 1181 aa20.43■□□□□ 0.86
CCDC88B-202ENST00000356786 FOXN3O00409 490 aaPredicted RBP20.43■□□□□ 0.86
CCDC88B-202ENST00000356786 PJA2O43164 708 aa20.43■□□□□ 0.86
CCDC88B-202ENST00000356786 TPST1O60507 370 aa20.43■□□□□ 0.86
CCDC88B-202ENST00000356786 HUS1O60921 280 aa20.43■□□□□ 0.86
CCDC88B-202ENST00000356786 TNFAIP2Q03169 654 aa20.43■□□□□ 0.86
CCDC88B-202ENST00000356786 TRADDQ15628 312 aa20.43■□□□□ 0.86
CCDC88B-202ENST00000356786 SNX30Q5VWJ9 437 aa20.43■□□□□ 0.86
CCDC88B-202ENST00000356786 IFT43Q96FT9 208 aa20.43■□□□□ 0.86
CCDC88B-202ENST00000356786 FAM167AQ96KS9 214 aa20.43■□□□□ 0.86
CCDC88B-202ENST00000356786 OSGEPQ9NPF4 335 aa20.43■□□□□ 0.86
CCDC88B-202ENST00000356786 TOPORSQ9NS56 1045 aaPredicted RBP20.43■□□□□ 0.86
CCDC88B-202ENST00000356786 IL1RAPL1Q9NZN1 696 aa20.43■□□□□ 0.86
CCDC88B-202ENST00000356786 TBCCQ15814 346 aa20.43■□□□□ 0.86
CCDC88B-202ENST00000356786 SBK1Q52WX2 424 aa20.43■□□□□ 0.86
CCDC88B-202ENST00000356786 RC3H1Q5TC82 1133 aaKnown RBP20.43■□□□□ 0.86
CCDC88B-202ENST00000356786 IYDQ6PHW0 289 aa20.43■□□□□ 0.86
CCDC88B-202ENST00000356786 NSUN6Q8TEA1 469 aaKnown RBP20.43■□□□□ 0.86
CCDC88B-202ENST00000356786 TLR10Q9BXR5 811 aa20.43■□□□□ 0.86
CCDC88B-202ENST00000356786 ITSN1Q15811 1721 aa20.42■□□□□ 0.86
CCDC88B-202ENST00000356786 UBA6A0AVT1 1052 aaPredicted RBP20.42■□□□□ 0.86
CCDC88B-202ENST00000356786 ARPP19P56211 112 aa20.42■□□□□ 0.86
CCDC88B-202ENST00000356786 ABCE1P61221 599 aaKnown RBP20.42■□□□□ 0.86
CCDC88B-202ENST00000356786 ERVK-9P63128 1117 aa20.42■□□□□ 0.86
CCDC88B-202ENST00000356786 NFX1Q12986 1120 aaKnown RBP20.42■□□□□ 0.86
CCDC88B-202ENST00000356786 SMTNL2Q2TAL5 461 aa20.42■□□□□ 0.86
CCDC88B-202ENST00000356786 PRUNE1Q86TP1 453 aa20.42■□□□□ 0.86
CCDC88B-202ENST00000356786 PCDHA10Q9Y5I2 948 aa20.42■□□□□ 0.86
CCDC88B-202ENST00000356786 TBX3O15119 743 aa20.42■□□□□ 0.86
CCDC88B-202ENST00000356786 S100A5P33763 92 aa20.42■□□□□ 0.86
CCDC88B-202ENST00000356786 SPRP35270 261 aaPredicted RBP20.42■□□□□ 0.86
CCDC88B-202ENST00000356786 HSPA13P48723 471 aa20.42■□□□□ 0.86
CCDC88B-202ENST00000356786 AP3M2P53677 418 aa20.42■□□□□ 0.86
CCDC88B-202ENST00000356786 ZC3H12BQ5HYM0 836 aaKnown RBP20.42■□□□□ 0.86
CCDC88B-202ENST00000356786 ZNF786Q8N393 782 aa20.42■□□□□ 0.86
CCDC88B-202ENST00000356786 ATP8B4Q8TF62 1192 aa20.42■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms