RNA–Protein interactions for RNA: ENST00000338368.7

PRKDC-202, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PRKDC, Length 12,784 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-202ENST00000338368 ATRNL1Q5VV63 1379 aa6.64□□□□□ -1.35
PRKDC-202ENST00000338368 GTF2A2P52657 109 aa6.63□□□□□ -1.35
PRKDC-202ENST00000338368 NME3Q13232 169 aa6.63□□□□□ -1.35
PRKDC-202ENST00000338368 LBX2Q6XYB7 198 aa6.63□□□□□ -1.35
PRKDC-202ENST00000338368 NLRP14Q86W24 1093 aa6.63□□□□□ -1.35
PRKDC-202ENST00000338368 GPATCH11Q8N954 259 aa6.63□□□□□ -1.35
PRKDC-202ENST00000338368 TPX2Q9ULW0 747 aaKnown RBP6.63□□□□□ -1.35
PRKDC-202ENST00000338368 WDR91A4D1P6 747 aa6.63□□□□□ -1.35
PRKDC-202ENST00000338368 CD4P01730 458 aa6.63□□□□□ -1.35
PRKDC-202ENST00000338368 RGPD1P0DJD0 1748 aa6.63□□□□□ -1.35
PRKDC-202ENST00000338368 SEC24CP53992 1094 aa6.63□□□□□ -1.35
PRKDC-202ENST00000338368 ATG4AQ8WYN0 398 aa6.63□□□□□ -1.35
PRKDC-202ENST00000338368 CREB3O43889 395 aa6.63□□□□□ -1.35
PRKDC-202ENST00000338368 CCNE2O96020 404 aa6.63□□□□□ -1.35
PRKDC-202ENST00000338368 GPD1P21695 349 aa6.63□□□□□ -1.35
PRKDC-202ENST00000338368 CDCA5Q96FF9 252 aa6.63□□□□□ -1.35
PRKDC-202ENST00000338368 CFAP36Q96G28 342 aa6.63□□□□□ -1.35
PRKDC-202ENST00000338368 TRAIPQ9BWF2 469 aa6.63□□□□□ -1.35
PRKDC-202ENST00000338368 RSAD1Q9HA92 442 aa6.63□□□□□ -1.35
PRKDC-202ENST00000338368 MLXIPLQ9NP71 852 aa6.63□□□□□ -1.35
PRKDC-202ENST00000338368 KLHL8Q9P2G9 620 aaPredicted RBP6.63□□□□□ -1.35
PRKDC-202ENST00000338368 UBQLN1Q9UMX0 589 aaKnown RBP6.63□□□□□ -1.35
PRKDC-202ENST00000338368 PCDHA3Q9Y5H8 950 aa6.63□□□□□ -1.35
PRKDC-202ENST00000338368 KRT38O76015 456 aa6.63□□□□□ -1.35
PRKDC-202ENST00000338368 UBA1P22314 1058 aaKnown RBP6.63□□□□□ -1.35
PRKDC-202ENST00000338368 HSPA9P38646 679 aaKnown RBP6.63□□□□□ -1.35
PRKDC-202ENST00000338368 AMPD2Q01433 879 aa6.63□□□□□ -1.35
PRKDC-202ENST00000338368 MAP7D1Q3KQU3 841 aa6.63□□□□□ -1.35
PRKDC-202ENST00000338368 MFSD14CQ5VZR4 134 aa6.63□□□□□ -1.35
PRKDC-202ENST00000338368 COPEO14579 308 aa6.63□□□□□ -1.35
PRKDC-202ENST00000338368 LPXNO60711 386 aa6.63□□□□□ -1.35
PRKDC-202ENST00000338368 ERVK-9P63128 1117 aa6.63□□□□□ -1.35
PRKDC-202ENST00000338368 C1orf228Q6PIY5 440 aa6.63□□□□□ -1.35
PRKDC-202ENST00000338368 CDKL3Q8IVW4 592 aaPredicted RBP6.63□□□□□ -1.35
PRKDC-202ENST00000338368 TRIM42Q8IWZ5 723 aa6.63□□□□□ -1.35
PRKDC-202ENST00000338368 TBC1D31Q96DN5 1066 aa6.63□□□□□ -1.35
PRKDC-202ENST00000338368 PABPC3Q9H361 631 aaKnown RBP6.63□□□□□ -1.35
PRKDC-202ENST00000338368 AVENQ9NQS1 362 aaPredicted RBP6.63□□□□□ -1.35
PRKDC-202ENST00000338368 TLK1Q9UKI8 766 aa6.63□□□□□ -1.35
PRKDC-202ENST00000338368 ITGA8P53708 1063 aa6.63□□□□□ -1.35
PRKDC-202ENST00000338368 SH3BGRP55822 239 aaPredicted RBP6.63□□□□□ -1.35
PRKDC-202ENST00000338368 RNF139Q8WU17 664 aa6.63□□□□□ -1.35
PRKDC-202ENST00000338368 TTC17Q96AE7 1141 aa6.63□□□□□ -1.35
PRKDC-202ENST00000338368 LENG9Q96B70 501 aa6.63□□□□□ -1.35
PRKDC-202ENST00000338368 ADAM33Q9BZ11 813 aa6.63□□□□□ -1.35
PRKDC-202ENST00000338368 PORCNQ9H237 461 aa6.63□□□□□ -1.35
PRKDC-202ENST00000338368 VDRP11473 427 aa6.63□□□□□ -1.35
PRKDC-202ENST00000338368 GLRA4Q5JXX5 417 aa6.63□□□□□ -1.35
PRKDC-202ENST00000338368 C12orf56Q8IXR9 622 aa6.63□□□□□ -1.35
PRKDC-202ENST00000338368 FOXP3Q9BZS1 431 aa6.63□□□□□ -1.35
PRKDC-202ENST00000338368 NFKBIEO00221 500 aa6.63□□□□□ -1.35
PRKDC-202ENST00000338368 IRF6O14896 467 aa6.63□□□□□ -1.35
PRKDC-202ENST00000338368 EIF3HO15372 352 aaKnown RBP eCLIP6.63□□□□□ -1.351e-6■■□□□ 13.5
PRKDC-202ENST00000338368 GRAP2O75791 330 aa6.63□□□□□ -1.35
PRKDC-202ENST00000338368 MYBL2P10244 700 aa6.63□□□□□ -1.35
PRKDC-202ENST00000338368 CYP2C8P10632 490 aa6.63□□□□□ -1.35
PRKDC-202ENST00000338368 RARGP13631 454 aa6.63□□□□□ -1.35
PRKDC-202ENST00000338368 IRX4P78413 519 aa6.63□□□□□ -1.35
PRKDC-202ENST00000338368 SCN4BQ8IWT1 228 aa6.63□□□□□ -1.35
PRKDC-202ENST00000338368 PITPNM3Q9BZ71 974 aa6.63□□□□□ -1.35
PRKDC-202ENST00000338368 KIAA1257Q9ULG3 409 aa6.63□□□□□ -1.35
PRKDC-202ENST00000338368 NOL4O94818 638 aa6.63□□□□□ -1.35
PRKDC-202ENST00000338368 LCP1P13796 627 aa6.63□□□□□ -1.35
PRKDC-202ENST00000338368 FNTAP49354 379 aa6.63□□□□□ -1.35
PRKDC-202ENST00000338368 SPARCL1Q14515 664 aa6.63□□□□□ -1.35
PRKDC-202ENST00000338368 CCDC38Q502W7 563 aa6.63□□□□□ -1.35
PRKDC-202ENST00000338368 CYP4A22Q5TCH4 519 aa6.63□□□□□ -1.35
PRKDC-202ENST00000338368 USP50Q70EL3 339 aaPredicted RBP6.63□□□□□ -1.35
PRKDC-202ENST00000338368 PPM1NQ8N819 430 aa6.63□□□□□ -1.35
PRKDC-202ENST00000338368 ASAP3Q8TDY4 903 aa6.63□□□□□ -1.35
PRKDC-202ENST00000338368 SHC3Q92529 594 aa6.63□□□□□ -1.35
PRKDC-202ENST00000338368 SETD4Q9NVD3 440 aa6.63□□□□□ -1.35
PRKDC-202ENST00000338368 ZBTB22O15209 634 aa6.63□□□□□ -1.35
PRKDC-202ENST00000338368 MAPK13O15264 365 aa6.63□□□□□ -1.35
PRKDC-202ENST00000338368 CELF2O95319 508 aaKnown RBP6.63□□□□□ -1.35
PRKDC-202ENST00000338368 NPTXRO95502 500 aa6.63□□□□□ -1.35
PRKDC-202ENST00000338368 CXCL8P10145 99 aa6.63□□□□□ -1.35
PRKDC-202ENST00000338368 KRT10P13645 584 aa6.63□□□□□ -1.35
PRKDC-202ENST00000338368 HSD17B3P37058 310 aa6.63□□□□□ -1.35
PRKDC-202ENST00000338368 CAPSQ13938 189 aa6.63□□□□□ -1.35
PRKDC-202ENST00000338368 NFIL3Q16649 462 aa6.63□□□□□ -1.35
PRKDC-202ENST00000338368 EPM2AIP1Q7L775 607 aaPredicted RBP6.63□□□□□ -1.35
PRKDC-202ENST00000338368 EPS8L1Q8TE68 723 aa6.63□□□□□ -1.35
PRKDC-202ENST00000338368 DEPDC1BQ8WUY9 529 aa6.63□□□□□ -1.35
PRKDC-202ENST00000338368 CCDC97Q96F63 343 aaPredicted RBP6.63□□□□□ -1.35
PRKDC-202ENST00000338368 ZFYVE28Q9HCC9 887 aa6.63□□□□□ -1.35
PRKDC-202ENST00000338368 CDH8P55286 799 aa6.63□□□□□ -1.35
PRKDC-202ENST00000338368 PTENP60484 403 aa6.63□□□□□ -1.35
PRKDC-202ENST00000338368 NR1H3Q13133 447 aa6.63□□□□□ -1.35
PRKDC-202ENST00000338368 THOC5Q13769 683 aaKnown RBP6.63□□□□□ -1.35
PRKDC-202ENST00000338368 UGCGQ16739 394 aa6.63□□□□□ -1.35
PRKDC-202ENST00000338368 P3H1Q32P28 736 aa6.63□□□□□ -1.35
PRKDC-202ENST00000338368 EMC1Q8N766 993 aa6.62□□□□□ -1.35
PRKDC-202ENST00000338368 REPS2Q8NFH8 660 aa6.62□□□□□ -1.35
PRKDC-202ENST00000338368 SLC12A6Q9UHW9 1150 aa6.62□□□□□ -1.35
PRKDC-202ENST00000338368 CCDC88AQ3V6T2 1871 aa6.62□□□□□ -1.35
PRKDC-202ENST00000338368 MOCS2O96007 188 aaPredicted RBP6.62□□□□□ -1.35
PRKDC-202ENST00000338368 VTNP04004 478 aa6.62□□□□□ -1.35
PRKDC-202ENST00000338368 PPIL2Q13356 520 aa6.62□□□□□ -1.35
PRKDC-202ENST00000338368 MAP1SQ66K74 1059 aaPredicted RBP6.62□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms