RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 MAP3K6O95382 1288 aa13.2□□□□□ -0.3
SDC3-201ENST00000336798 EYA4O95677 639 aa13.2□□□□□ -0.3
SDC3-201ENST00000336798 CHN1P15882 459 aa13.2□□□□□ -0.3
SDC3-201ENST00000336798 PTPN7P35236 360 aa13.2□□□□□ -0.3
SDC3-201ENST00000336798 ALDH1A3P47895 512 aa13.2□□□□□ -0.3
SDC3-201ENST00000336798 EFCAB12Q6NXP0 572 aa13.2□□□□□ -0.3
SDC3-201ENST00000336798 SHC4Q6S5L8 630 aa13.2□□□□□ -0.3
SDC3-201ENST00000336798 WNK4Q96J92 1243 aa13.2□□□□□ -0.3
SDC3-201ENST00000336798 DDX5P17844 614 aaKnown RBP13.2□□□□□ -0.3
SDC3-201ENST00000336798 PLA2G4AP47712 749 aa13.2□□□□□ -0.3
SDC3-201ENST00000336798 LAMB3Q13751 1172 aa13.2□□□□□ -0.3
SDC3-201ENST00000336798 SCARF1Q14162 830 aa13.2□□□□□ -0.3
SDC3-201ENST00000336798 GLRA4Q5JXX5 417 aa13.2□□□□□ -0.3
SDC3-201ENST00000336798 DDX42Q86XP3 938 aaKnown RBP eCLIP13.2□□□□□ -0.3
SDC3-201ENST00000336798 USP6P35125 1406 aa13.2□□□□□ -0.3
SDC3-201ENST00000336798 STK36Q9NRP7 1315 aa13.19□□□□□ -0.3
SDC3-201ENST00000336798 SPTLC1O15269 473 aa13.19□□□□□ -0.3
SDC3-201ENST00000336798 CAND2O75155 1236 aa13.19□□□□□ -0.3
SDC3-201ENST00000336798 RHOBTB1O94844 696 aa13.19□□□□□ -0.3
SDC3-201ENST00000336798 NME5P56597 212 aa13.19□□□□□ -0.3
SDC3-201ENST00000336798 ENOSF1Q7L5Y1 443 aa13.19□□□□□ -0.3
SDC3-201ENST00000336798 SPATA21Q7Z572 469 aa13.19□□□□□ -0.3
SDC3-201ENST00000336798 ATL2Q8NHH9 583 aa13.19□□□□□ -0.3
SDC3-201ENST00000336798 PRDM4Q9UKN5 801 aa13.19□□□□□ -0.3
SDC3-201ENST00000336798 CDYLQ9Y232 598 aa13.19□□□□□ -0.3
SDC3-201ENST00000336798 APOA4P06727 396 aa13.19□□□□□ -0.3
SDC3-201ENST00000336798 CYP2C19P33261 490 aa13.19□□□□□ -0.3
SDC3-201ENST00000336798 COG2Q14746 738 aa13.19□□□□□ -0.3
SDC3-201ENST00000336798 EMC2Q15006 297 aa13.19□□□□□ -0.3
SDC3-201ENST00000336798 IER5Q5VY09 327 aa13.19□□□□□ -0.3
SDC3-201ENST00000336798 AGBL1Q96MI9 1066 aa13.19□□□□□ -0.3
SDC3-201ENST00000336798 MED15Q96RN5 788 aa13.19□□□□□ -0.3
SDC3-201ENST00000336798 SPATA16Q9BXB7 569 aa13.19□□□□□ -0.3
SDC3-201ENST00000336798 SLC25A13Q9UJS0 675 aa13.19□□□□□ -0.3
SDC3-201ENST00000336798 TSPOAP1O95153 1857 aa13.19□□□□□ -0.3
SDC3-201ENST00000336798 PGK2P07205 417 aa13.19□□□□□ -0.3
SDC3-201ENST00000336798 MLNP12872 115 aa13.19□□□□□ -0.3
SDC3-201ENST00000336798 RBM15Q96T37 977 aaKnown RBP eCLIP13.19□□□□□ -0.33e-9■■■■■ 30.8
SDC3-201ENST00000336798 THTPAQ9BU02 230 aa13.19□□□□□ -0.3
SDC3-201ENST00000336798 MAN1C1Q9NR34 630 aa13.19□□□□□ -0.3
SDC3-201ENST00000336798 NEU2Q9Y3R4 380 aa13.19□□□□□ -0.3
SDC3-201ENST00000336798 RPAP1Q9BWH6 1393 aaPredicted RBP13.19□□□□□ -0.3
SDC3-201ENST00000336798 XPO1O14980 1071 aaKnown RBP13.19□□□□□ -0.3
SDC3-201ENST00000336798 RALBP11234 206 aa13.19□□□□□ -0.3
SDC3-201ENST00000336798 HOXA7P31268 230 aaPredicted RBP13.19□□□□□ -0.3
SDC3-201ENST00000336798 CPA2P48052 419 aa13.19□□□□□ -0.3
SDC3-201ENST00000336798 PTK7Q13308 1070 aa13.19□□□□□ -0.3
SDC3-201ENST00000336798 SNRNP35Q16560 246 aaKnown RBP13.19□□□□□ -0.3
SDC3-201ENST00000336798 EME1Q96AY2 570 aa13.19□□□□□ -0.3
SDC3-201ENST00000336798 ADGRG1Q9Y653 693 aa13.19□□□□□ -0.3
SDC3-201ENST00000336798 GH1P01241 217 aa13.19□□□□□ -0.3
SDC3-201ENST00000336798 WEE1P30291 646 aa13.19□□□□□ -0.3
SDC3-201ENST00000336798 HARS2P49590 506 aaKnown RBP13.19□□□□□ -0.3
SDC3-201ENST00000336798 TMED10P49755 219 aaKnown RBP13.19□□□□□ -0.3
SDC3-201ENST00000336798 KLK7P49862 253 aa13.19□□□□□ -0.3
SDC3-201ENST00000336798 SNX17Q15036 470 aa13.19□□□□□ -0.3
SDC3-201ENST00000336798 THAP11Q96EK4 314 aa13.19□□□□□ -0.3
SDC3-201ENST00000336798 FAM84BQ96KN1 310 aaPredicted RBP13.19□□□□□ -0.3
SDC3-201ENST00000336798 PSD3Q9NYI0 1048 aa13.19□□□□□ -0.3
SDC3-201ENST00000336798 SAMD9Q5K651 1589 aa13.19□□□□□ -0.3
SDC3-201ENST00000336798 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP13.18□□□□□ -0.3
SDC3-201ENST00000336798 IQCA1LA6NCM1 817 aa13.18□□□□□ -0.3
SDC3-201ENST00000336798 YY1P25490 414 aa13.18□□□□□ -0.3
SDC3-201ENST00000336798 FRMD5Q7Z6J6 570 aa13.18□□□□□ -0.3
SDC3-201ENST00000336798 SREK1IP1Q8N9Q2 155 aaPredicted RBP13.18□□□□□ -0.3
SDC3-201ENST00000336798 ANKRD49Q8WVL7 239 aa13.18□□□□□ -0.3
SDC3-201ENST00000336798 LINC00854A0A1B0GVQ3 168 aa13.18□□□□□ -0.3
SDC3-201ENST00000336798 LRG1P02750 347 aa13.18□□□□□ -0.3
SDC3-201ENST00000336798 DARSP14868 501 aaKnown RBP13.18□□□□□ -0.3
SDC3-201ENST00000336798 AP3M2P53677 418 aa13.18□□□□□ -0.3
SDC3-201ENST00000336798 FAXCQ5TGI0 409 aa13.18□□□□□ -0.3
SDC3-201ENST00000336798 ARHGEF26Q96DR7 871 aa13.18□□□□□ -0.3
SDC3-201ENST00000336798 CYFIP2Q96F07 1278 aa13.18□□□□□ -0.3
SDC3-201ENST00000336798 CHP1Q99653 195 aa13.18□□□□□ -0.3
SDC3-201ENST00000336798 SMARCAD1Q9H4L7 1026 aa13.18□□□□□ -0.3
SDC3-201ENST00000336798 RMI1Q9H9A7 625 aa13.18□□□□□ -0.3
SDC3-201ENST00000336798 CAMSAP3Q9P1Y5 1249 aaPredicted RBP13.18□□□□□ -0.3
SDC3-201ENST00000336798 MKL2Q9ULH7 1088 aa13.18□□□□□ -0.3
SDC3-201ENST00000336798 ARIH1Q9Y4X5 557 aaPredicted RBP13.18□□□□□ -0.3
SDC3-201ENST00000336798 TPP2P29144 1249 aaPredicted RBP13.18□□□□□ -0.3
SDC3-201ENST00000336798 TRIM69Q86WT6 500 aa13.18□□□□□ -0.3
SDC3-201ENST00000336798 PPP1R14AQ96A00 147 aa13.18□□□□□ -0.3
SDC3-201ENST00000336798 IRX2Q9BZI1 471 aaPredicted RBP13.18□□□□□ -0.3
SDC3-201ENST00000336798 ZFYVE28Q9HCC9 887 aa13.18□□□□□ -0.3
SDC3-201ENST00000336798 NMRK2Q9NPI5 230 aa13.18□□□□□ -0.3
SDC3-201ENST00000336798 APEX2Q9UBZ4 518 aa13.18□□□□□ -0.3
SDC3-201ENST00000336798 ANO9A1A5B4 782 aa13.18□□□□□ -0.3
SDC3-201ENST00000336798 PHF20L1A8MW92 1017 aa13.18□□□□□ -0.3
SDC3-201ENST00000336798 USP11P51784 963 aa13.18□□□□□ -0.3
SDC3-201ENST00000336798 ZNF200P98182 395 aaPredicted RBP13.18□□□□□ -0.3
SDC3-201ENST00000336798 PRKCEQ02156 737 aa13.18□□□□□ -0.3
SDC3-201ENST00000336798 NFIXQ14938 502 aa13.18□□□□□ -0.3
SDC3-201ENST00000336798 CEP78Q5JTW2 689 aa13.18□□□□□ -0.3
SDC3-201ENST00000336798 ATF7IP2Q5U623 682 aa13.18□□□□□ -0.3
SDC3-201ENST00000336798 TTC39CQ8N584 583 aa13.18□□□□□ -0.3
SDC3-201ENST00000336798 DPF2Q92785 391 aa13.18□□□□□ -0.3
SDC3-201ENST00000336798 TSPAN17Q96FV3 270 aa13.18□□□□□ -0.3
SDC3-201ENST00000336798 FAM129AQ9BZQ8 928 aa13.18□□□□□ -0.3
SDC3-201ENST00000336798 ZKSCAN7Q9P0L1 754 aaPredicted RBP13.18□□□□□ -0.3
SDC3-201ENST00000336798 CRLS1Q9UJA2 301 aa13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms