RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 RCOR2Q8IZ40 523 aa7.24□□□□□ -1.25
SF3B1-201ENST00000335508 KIRREL3Q8IZU9 778 aa7.24□□□□□ -1.25
SF3B1-201ENST00000335508 SNED1Q8TER0 1413 aa7.24□□□□□ -1.25
SF3B1-201ENST00000335508 TARSL2A2RTX5 802 aaKnown RBP7.24□□□□□ -1.25
SF3B1-201ENST00000335508 M0R2N6 131 aa7.24□□□□□ -1.25
SF3B1-201ENST00000335508 TGFB1I1O43294 461 aa7.24□□□□□ -1.25
SF3B1-201ENST00000335508 B4GALT4O60513 344 aa7.24□□□□□ -1.25
SF3B1-201ENST00000335508 P3H1Q32P28 736 aa7.24□□□□□ -1.25
SF3B1-201ENST00000335508 VPS52Q8N1B4 723 aa7.24□□□□□ -1.25
SF3B1-201ENST00000335508 FAM71BQ8TC56 605 aa7.24□□□□□ -1.25
SF3B1-201ENST00000335508 FBF1Q8TES7 1133 aa7.24□□□□□ -1.25
SF3B1-201ENST00000335508 LACRTQ9GZZ8 138 aa7.24□□□□□ -1.25
SF3B1-201ENST00000335508 COQ4Q9Y3A0 265 aa7.24□□□□□ -1.25
SF3B1-201ENST00000335508 MOXD2PA6NHM9 499 aa7.24□□□□□ -1.25
SF3B1-201ENST00000335508 SPAG6O75602 509 aa7.24□□□□□ -1.25
SF3B1-201ENST00000335508 TFRCP02786 760 aaKnown RBP7.24□□□□□ -1.25
SF3B1-201ENST00000335508 ACO1P21399 889 aaKnown RBP7.24□□□□□ -1.25
SF3B1-201ENST00000335508 KCNA3P22001 575 aa7.24□□□□□ -1.25
SF3B1-201ENST00000335508 RPL9P32969 192 aaKnown RBP7.24□□□□□ -1.25
SF3B1-201ENST00000335508 GRM5P41594 1212 aa7.24□□□□□ -1.25
SF3B1-201ENST00000335508 FNTAP49354 379 aa7.24□□□□□ -1.25
SF3B1-201ENST00000335508 TUFMP49411 452 aaKnown RBP7.24□□□□□ -1.25
SF3B1-201ENST00000335508 BASP1P80723 227 aaKnown RBP7.24□□□□□ -1.25
SF3B1-201ENST00000335508 BBS9Q3SYG4 887 aa7.24□□□□□ -1.25
SF3B1-201ENST00000335508 ZNF557Q8N988 423 aaPredicted RBP7.24□□□□□ -1.25
SF3B1-201ENST00000335508 STKLD1Q8NE28 680 aa7.24□□□□□ -1.25
SF3B1-201ENST00000335508 CNTNAP2Q9UHC6 1331 aa7.24□□□□□ -1.25
SF3B1-201ENST00000335508 SGK1O00141 431 aa7.24□□□□□ -1.25
SF3B1-201ENST00000335508 PPP1R12AO14974 1030 aaPredicted RBP7.24□□□□□ -1.25
SF3B1-201ENST00000335508 ALDH2P05091 517 aa7.24□□□□□ -1.25
SF3B1-201ENST00000335508 GHRP10912 638 aa7.24□□□□□ -1.25
SF3B1-201ENST00000335508 MYL6P60660 151 aa7.24□□□□□ -1.25
SF3B1-201ENST00000335508 LAMB3Q13751 1172 aa7.24□□□□□ -1.25
SF3B1-201ENST00000335508 CNGA2Q16280 664 aa7.24□□□□□ -1.25
SF3B1-201ENST00000335508 TREML2Q5T2D2 321 aa7.24□□□□□ -1.25
SF3B1-201ENST00000335508 ZNF449Q6P9G9 518 aa7.24□□□□□ -1.25
SF3B1-201ENST00000335508 FEZF2Q8TBJ5 459 aa7.24□□□□□ -1.25
SF3B1-201ENST00000335508 CYFIP2Q96F07 1278 aa7.24□□□□□ -1.25
SF3B1-201ENST00000335508 CABS1Q96KC9 395 aa7.24□□□□□ -1.25
SF3B1-201ENST00000335508 ZNF512Q96ME7 567 aaPredicted RBP7.24□□□□□ -1.25
SF3B1-201ENST00000335508 ARHGAP20Q9P2F6 1191 aa7.24□□□□□ -1.25
SF3B1-201ENST00000335508 MAFBQ9Y5Q3 323 aaPredicted RBP7.24□□□□□ -1.25
SF3B1-201ENST00000335508 MAD1L1Q9Y6D9 718 aa7.24□□□□□ -1.25
SF3B1-201ENST00000335508 COL1A1P02452 1464 aaPredicted RBP7.24□□□□□ -1.25
SF3B1-201ENST00000335508 SYNJ2BP-COX16A0A087WUM0 186 aa7.24□□□□□ -1.25
SF3B1-201ENST00000335508 TADA3O75528 432 aa7.24□□□□□ -1.25
SF3B1-201ENST00000335508 FAM163BP0C2L3 166 aa7.24□□□□□ -1.25
SF3B1-201ENST00000335508 CYP2C18P33260 490 aa7.24□□□□□ -1.25
SF3B1-201ENST00000335508 GARSP41250 739 aaKnown RBP7.24□□□□□ -1.25
SF3B1-201ENST00000335508 ARHGAP25P42331 645 aa7.24□□□□□ -1.25
SF3B1-201ENST00000335508 SMARCB1Q12824 385 aa7.24□□□□□ -1.25
SF3B1-201ENST00000335508 SLC35G1Q2M3R5 365 aa7.24□□□□□ -1.25
SF3B1-201ENST00000335508 LRRC38Q5VT99 294 aa7.24□□□□□ -1.25
SF3B1-201ENST00000335508 ANKRD20A3Q5VUR7 823 aa7.24□□□□□ -1.25
SF3B1-201ENST00000335508 MTMR12Q9C0I1 747 aa7.24□□□□□ -1.25
SF3B1-201ENST00000335508 DHX35Q9H5Z1 703 aaKnown RBP7.24□□□□□ -1.25
SF3B1-201ENST00000335508 COX16Q9P0S2 106 aa7.24□□□□□ -1.25
SF3B1-201ENST00000335508 NHSL1Q5SYE7 1610 aa7.23□□□□□ -1.25
SF3B1-201ENST00000335508 DPYSL4O14531 572 aa7.23□□□□□ -1.25
SF3B1-201ENST00000335508 PROSCO94903 275 aa7.23□□□□□ -1.25
SF3B1-201ENST00000335508 URODP06132 367 aa7.23□□□□□ -1.25
SF3B1-201ENST00000335508 TUSC3Q13454 348 aa7.23□□□□□ -1.25
SF3B1-201ENST00000335508 OVOS1Q6IE37 1185 aa7.23□□□□□ -1.25
SF3B1-201ENST00000335508 RNF25Q96BH1 459 aaPredicted RBP7.23□□□□□ -1.25
SF3B1-201ENST00000335508 ZBTB9Q96C00 473 aa7.23□□□□□ -1.25
SF3B1-201ENST00000335508 KLHL8Q9P2G9 620 aaPredicted RBP7.23□□□□□ -1.25
SF3B1-201ENST00000335508 DERAQ9Y315 318 aa7.23□□□□□ -1.25
SF3B1-201ENST00000335508 PCDHA2Q9Y5H9 948 aa7.23□□□□□ -1.25
SF3B1-201ENST00000335508 PTCH2Q9Y6C5 1203 aa7.23□□□□□ -1.25
SF3B1-201ENST00000335508 CAND2O75155 1236 aa7.23□□□□□ -1.25
SF3B1-201ENST00000335508 WEE2P0C1S8 567 aa7.23□□□□□ -1.25
SF3B1-201ENST00000335508 STX2P32856 288 aa7.23□□□□□ -1.25
SF3B1-201ENST00000335508 ARL1P40616 181 aaPredicted RBP7.23□□□□□ -1.25
SF3B1-201ENST00000335508 MTF1Q14872 753 aa7.23□□□□□ -1.25
SF3B1-201ENST00000335508 UGP2Q16851 508 aa7.23□□□□□ -1.25
SF3B1-201ENST00000335508 FYB2Q5VWT5 728 aa7.23□□□□□ -1.25
SF3B1-201ENST00000335508 ACAD10Q6JQN1 1059 aa7.23□□□□□ -1.25
SF3B1-201ENST00000335508 NYAP1Q6ZVC0 841 aa7.23□□□□□ -1.25
SF3B1-201ENST00000335508 SYT15Q9BQS2 421 aa7.23□□□□□ -1.25
SF3B1-201ENST00000335508 PCSK1NQ9UHG2 260 aa7.23□□□□□ -1.25
SF3B1-201ENST00000335508 FARP1Q9Y4F1 1045 aaPredicted RBP7.23□□□□□ -1.25
SF3B1-201ENST00000335508 CEP250Q9BV73 2442 aa7.23□□□□□ -1.25
SF3B1-201ENST00000335508 I3L4J1 428 aa7.23□□□□□ -1.25
SF3B1-201ENST00000335508 RASGRF2O14827 1237 aa7.23□□□□□ -1.25
SF3B1-201ENST00000335508 BUB1BO60566 1050 aaPredicted RBP7.23□□□□□ -1.25
SF3B1-201ENST00000335508 PEX14O75381 377 aa7.23□□□□□ -1.25
SF3B1-201ENST00000335508 CXCL8P10145 99 aa7.23□□□□□ -1.25
SF3B1-201ENST00000335508 OR1G1P47890 313 aa7.23□□□□□ -1.25
SF3B1-201ENST00000335508 NCKAP1LP55160 1127 aa7.23□□□□□ -1.25
SF3B1-201ENST00000335508 PDK1Q15118 436 aa7.23□□□□□ -1.25
SF3B1-201ENST00000335508 DNAJB3Q8WWF6 145 aa7.23□□□□□ -1.25
SF3B1-201ENST00000335508 CCDC97Q96F63 343 aaPredicted RBP7.23□□□□□ -1.25
SF3B1-201ENST00000335508 SELENOSQ9BQE4 189 aa7.23□□□□□ -1.25
SF3B1-201ENST00000335508 ELOVL4Q9GZR5 314 aa7.23□□□□□ -1.25
SF3B1-201ENST00000335508 XRN2Q9H0D6 950 aaKnown RBP eCLIP7.23□□□□□ -1.25
SF3B1-201ENST00000335508 DDX47Q9H0S4 455 aaKnown RBP7.23□□□□□ -1.25
SF3B1-201ENST00000335508 TJP2Q9UDY2 1190 aa7.23□□□□□ -1.25
SF3B1-201ENST00000335508 SOWAHBA6NEL2 793 aa7.23□□□□□ -1.25
SF3B1-201ENST00000335508 RECQL4O94761 1208 aa7.23□□□□□ -1.25
SF3B1-201ENST00000335508 TMEM62Q0P6H9 643 aa7.23□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms