RNA–Protein interactions for RNA: ENST00000314289.12

RNF4-201, Transcript of ring finger protein 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RNF4, Length 3,088 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-201ENST00000314289 PLAAQ9Y263 795 aa13.21□□□□□ -0.29
RNF4-201ENST00000314289 PCDHA3Q9Y5H8 950 aa13.21□□□□□ -0.29
RNF4-201ENST00000314289 PLXNA1Q9UIW2 1896 aa13.21□□□□□ -0.29
RNF4-201ENST00000314289 MTA2O94776 668 aa13.21□□□□□ -0.3
RNF4-201ENST00000314289 TBXAS1P24557 533 aaPredicted RBP13.21□□□□□ -0.3
RNF4-201ENST00000314289 HSD17B3P37058 310 aa13.21□□□□□ -0.3
RNF4-201ENST00000314289 TAS2R40P59535 323 aa13.21□□□□□ -0.3
RNF4-201ENST00000314289 MAMLD1Q13495 774 aa13.21□□□□□ -0.3
RNF4-201ENST00000314289 TRIP13Q15645 432 aaPredicted RBP13.21□□□□□ -0.3
RNF4-201ENST00000314289 JADE1Q6IE81 842 aa13.21□□□□□ -0.3
RNF4-201ENST00000314289 SUGP1Q8IWZ8 645 aaKnown RBP13.21□□□□□ -0.3
RNF4-201ENST00000314289 CCDC105Q8IYK2 499 aa13.21□□□□□ -0.3
RNF4-201ENST00000314289 KIAA0319LQ8IZA0 1049 aa13.21□□□□□ -0.3
RNF4-201ENST00000314289 RUBCNQ92622 972 aa13.21□□□□□ -0.3
RNF4-201ENST00000314289 MAML3Q96JK9 1138 aa13.21□□□□□ -0.3
RNF4-201ENST00000314289 KATNBL1Q9H079 304 aa13.21□□□□□ -0.3
RNF4-201ENST00000314289 TTC7AQ9ULT0 858 aaPredicted RBP13.21□□□□□ -0.3
RNF4-201ENST00000314289 PI4K2BG5E9Z4 385 aa13.2□□□□□ -0.3
RNF4-201ENST00000314289 TLR3O15455 904 aaKnown RBP13.2□□□□□ -0.3
RNF4-201ENST00000314289 DYNC1LI2O43237 492 aaPredicted RBP13.2□□□□□ -0.3
RNF4-201ENST00000314289 PROZP22891 400 aa13.2□□□□□ -0.3
RNF4-201ENST00000314289 SLC26A2P50443 739 aa13.2□□□□□ -0.3
RNF4-201ENST00000314289 UAP1Q16222 522 aaPredicted RBP13.2□□□□□ -0.3
RNF4-201ENST00000314289 UBAP2Q5T6F2 1119 aaKnown RBP13.2□□□□□ -0.3
RNF4-201ENST00000314289 SLC13A5Q86YT5 568 aaPredicted RBP13.2□□□□□ -0.3
RNF4-201ENST00000314289 PPTC7Q8NI37 304 aa13.2□□□□□ -0.3
RNF4-201ENST00000314289 UHMK1Q8TAS1 419 aaKnown RBP13.2□□□□□ -0.3
RNF4-201ENST00000314289 NIF3L1Q9GZT8 377 aa13.2□□□□□ -0.3
RNF4-201ENST00000314289 XYLT2Q9H1B5 865 aa13.2□□□□□ -0.3
RNF4-201ENST00000314289 SIX4Q9UIU6 781 aa13.2□□□□□ -0.3
RNF4-201ENST00000314289 ATP8A1Q9Y2Q0 1164 aa13.2□□□□□ -0.3
RNF4-201ENST00000314289 PIK3R2O00459 728 aa13.2□□□□□ -0.3
RNF4-201ENST00000314289 KIAA0754O94854 1291 aa13.2□□□□□ -0.3
RNF4-201ENST00000314289 TNNC2P02585 160 aa13.2□□□□□ -0.3
RNF4-201ENST00000314289 ASPAP45381 313 aa13.2□□□□□ -0.3
RNF4-201ENST00000314289 DHX9Q08211 1270 aaKnown RBP13.2□□□□□ -0.3
RNF4-201ENST00000314289 SGSM1Q2NKQ1 1148 aa13.2□□□□□ -0.3
RNF4-201ENST00000314289 CEP85LQ5SZL2 805 aa13.2□□□□□ -0.3
RNF4-201ENST00000314289 ANKS1BQ7Z6G8 1248 aa13.2□□□□□ -0.3
RNF4-201ENST00000314289 IQCKQ8N0W5 287 aa13.2□□□□□ -0.3
RNF4-201ENST00000314289 C1orf127Q8N9H9 656 aa13.2□□□□□ -0.3
RNF4-201ENST00000314289 OR6J1Q8NGC5 347 aa13.2□□□□□ -0.3
RNF4-201ENST00000314289 MYCBPQ99417 103 aaPredicted RBP13.2□□□□□ -0.3
RNF4-201ENST00000314289 NAP1L3Q99457 506 aaPredicted RBP13.2□□□□□ -0.3
RNF4-201ENST00000314289 NCAPGQ9BPX3 1015 aa13.2□□□□□ -0.3
RNF4-201ENST00000314289 SMYD3Q9H7B4 428 aa13.2□□□□□ -0.3
RNF4-201ENST00000314289 HES2Q9Y543 173 aa13.2□□□□□ -0.3
RNF4-201ENST00000314289 PLXNB2O15031 1838 aa13.2□□□□□ -0.3
RNF4-201ENST00000314289 GAS2O43903 313 aaKnown RBP13.19□□□□□ -0.3
RNF4-201ENST00000314289 PHKA2P46019 1235 aa13.19□□□□□ -0.3
RNF4-201ENST00000314289 VPS41P49754 854 aa13.19□□□□□ -0.3
RNF4-201ENST00000314289 MTHFD1LQ6UB35 978 aa13.19□□□□□ -0.3
RNF4-201ENST00000314289 PRUNE1Q86TP1 453 aa13.19□□□□□ -0.3
RNF4-201ENST00000314289 WHAMMQ8TF30 809 aa13.19□□□□□ -0.3
RNF4-201ENST00000314289 RNF25Q96BH1 459 aaPredicted RBP13.19□□□□□ -0.3
RNF4-201ENST00000314289 ANKRD36BP1Q96IX9 119 aa13.19□□□□□ -0.3
RNF4-201ENST00000314289 JPH2Q9BR39 696 aaPredicted RBP13.19□□□□□ -0.3
RNF4-201ENST00000314289 CHST7Q9NS84 486 aa13.19□□□□□ -0.3
RNF4-201ENST00000314289 GEMIN8Q9NWZ8 242 aaKnown RBP13.19□□□□□ -0.3
RNF4-201ENST00000314289 GOLGA8SH3BPF8 625 aa13.19□□□□□ -0.3
RNF4-201ENST00000314289 NNTQ13423 1086 aa13.19□□□□□ -0.3
RNF4-201ENST00000314289 CUL1Q13616 776 aa13.19□□□□□ -0.3
RNF4-201ENST00000314289 ACVR2BQ13705 512 aa13.19□□□□□ -0.3
RNF4-201ENST00000314289 AMHR2Q16671 573 aa13.19□□□□□ -0.3
RNF4-201ENST00000314289 MARCH8Q5T0T0 291 aa13.19□□□□□ -0.3
RNF4-201ENST00000314289 SPRYD7Q5W111 196 aa13.19□□□□□ -0.3
RNF4-201ENST00000314289 FBXO25Q8TCJ0 367 aa13.19□□□□□ -0.3
RNF4-201ENST00000314289 MCEEQ96PE7 176 aa13.19□□□□□ -0.3
RNF4-201ENST00000314289 TWNKQ96RR1 684 aa13.19□□□□□ -0.3
RNF4-201ENST00000314289 SH3GL2Q99962 352 aa13.19□□□□□ -0.3
RNF4-201ENST00000314289 ERP44Q9BS26 406 aa13.19□□□□□ -0.3
RNF4-201ENST00000314289 TINF2Q9BSI4 451 aa13.19□□□□□ -0.3
RNF4-201ENST00000314289 SDCBP2Q9H190 292 aa13.19□□□□□ -0.3
RNF4-201ENST00000314289 PDZD7Q9H5P4 517 aa13.19□□□□□ -0.3
RNF4-201ENST00000314289 CDHR5Q9HBB8 845 aa13.19□□□□□ -0.3
RNF4-201ENST00000314289 VTA1Q9NP79 307 aa13.19□□□□□ -0.3
RNF4-201ENST00000314289 PHF2O75151 1096 aa13.19□□□□□ -0.3
RNF4-201ENST00000314289 PSMC4P43686 418 aa13.19□□□□□ -0.3
RNF4-201ENST00000314289 LACTBP83111 547 aaPredicted RBP13.19□□□□□ -0.3
RNF4-201ENST00000314289 GUCY1A3Q02108 690 aa13.19□□□□□ -0.3
RNF4-201ENST00000314289 TCEAL1Q15170 157 aa13.19□□□□□ -0.3
RNF4-201ENST00000314289 GRIK4Q16099 956 aa13.19□□□□□ -0.3
RNF4-201ENST00000314289 KAZNQ674X7 775 aa13.19□□□□□ -0.3
RNF4-201ENST00000314289 DHX30Q7L2E3 1194 aaKnown RBP eCLIP13.19□□□□□ -0.3
RNF4-201ENST00000314289 ZNF677Q86XU0 584 aa13.19□□□□□ -0.3
RNF4-201ENST00000314289 WDTC1Q8N5D0 677 aa13.19□□□□□ -0.3
RNF4-201ENST00000314289 OTUD6BQ8N6M0 293 aa13.19□□□□□ -0.3
RNF4-201ENST00000314289 C2orf69Q8N8R5 385 aa13.19□□□□□ -0.3
RNF4-201ENST00000314289 BCCIPQ9P287 314 aaKnown RBP eCLIP13.19□□□□□ -0.3
RNF4-201ENST00000314289 TNFSF13BQ9Y275 285 aa13.19□□□□□ -0.3
RNF4-201ENST00000314289 R3HDM2Q9Y2K5 976 aaKnown RBP13.19□□□□□ -0.3
RNF4-201ENST00000314289 ITGBL1O95965 494 aaPredicted RBP13.18□□□□□ -0.3
RNF4-201ENST00000314289 RPL21P46778 160 aaKnown RBP13.18□□□□□ -0.3
RNF4-201ENST00000314289 PTP4A2Q12974 167 aa13.18□□□□□ -0.3
RNF4-201ENST00000314289 SIX1Q15475 284 aaPredicted RBP13.18□□□□□ -0.3
RNF4-201ENST00000314289 CCL14Q16627 93 aa13.18□□□□□ -0.3
RNF4-201ENST00000314289 ZNF484Q5JVG2 852 aa13.18□□□□□ -0.3
RNF4-201ENST00000314289 LIN9Q5TKA1 542 aa13.18□□□□□ -0.3
RNF4-201ENST00000314289 FAM81BQ96LP2 452 aa13.18□□□□□ -0.3
RNF4-201ENST00000314289 F8VP50 259 aa13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms