RNA–Protein interactions for RNA: ENST00000303354.10

SCN9A-201, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 9,786 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-201ENST00000303354 SPASTQ9UBP0 616 aa8.19□□□□□ -1.1
SCN9A-201ENST00000303354 AMACRQ9UHK6 382 aa8.19□□□□□ -1.1
SCN9A-201ENST00000303354 PCDHB12Q9Y5F1 795 aa8.19□□□□□ -1.1
SCN9A-201ENST00000303354 LAMC2Q13753 1193 aa8.18□□□□□ -1.1
SCN9A-201ENST00000303354 MAP3K21Q5TCX8 1036 aa8.18□□□□□ -1.1
SCN9A-201ENST00000303354 FAM171A1Q5VUB5 890 aa8.18□□□□□ -1.1
SCN9A-201ENST00000303354 PHACTR4Q8IZ21 702 aa8.18□□□□□ -1.1
SCN9A-201ENST00000303354 TMA16Q96EY4 203 aaKnown RBP8.18□□□□□ -1.1
SCN9A-201ENST00000303354 SYTL2Q9HCH5 934 aa8.18□□□□□ -1.1
SCN9A-201ENST00000303354 TEKT2Q9UIF3 430 aa8.18□□□□□ -1.1
SCN9A-201ENST00000303354 CBX4O00257 560 aa8.18□□□□□ -1.1
SCN9A-201ENST00000303354 CTIFO43310 598 aaKnown RBP8.18□□□□□ -1.1
SCN9A-201ENST00000303354 RHOBTB1O94844 696 aa8.18□□□□□ -1.1
SCN9A-201ENST00000303354 PCNAP12004 261 aa8.18□□□□□ -1.1
SCN9A-201ENST00000303354 ADORA2AP29274 412 aa8.18□□□□□ -1.1
SCN9A-201ENST00000303354 PMS2P54278 862 aa8.18□□□□□ -1.1
SCN9A-201ENST00000303354 DEFB115Q30KQ5 88 aa8.18□□□□□ -1.1
SCN9A-201ENST00000303354 ALS2CLQ60I27 953 aa8.18□□□□□ -1.1
SCN9A-201ENST00000303354 ZFPM1Q8IX07 1006 aa8.18□□□□□ -1.1
SCN9A-201ENST00000303354 PCDHGB4Q9UN71 923 aa8.18□□□□□ -1.1
SCN9A-201ENST00000303354 IFNA8P32881 189 aa8.18□□□□□ -1.1
SCN9A-201ENST00000303354 ALDH6A1Q02252 535 aaKnown RBP8.18□□□□□ -1.1
SCN9A-201ENST00000303354 NBPF20Q3BBV1 942 aa8.18□□□□□ -1.1
SCN9A-201ENST00000303354 ARL6IP4Q66PJ3 421 aaKnown RBP8.18□□□□□ -1.1
SCN9A-201ENST00000303354 PPIL4Q8WUA2 492 aaKnown RBP eCLIP8.18□□□□□ -1.1
SCN9A-201ENST00000303354 FOPNLQ96NB1 174 aa8.18□□□□□ -1.1
SCN9A-201ENST00000303354 TRIM51Q9BSJ1 452 aa8.18□□□□□ -1.1
SCN9A-201ENST00000303354 RHBGQ9H310 441 aa8.18□□□□□ -1.1
SCN9A-201ENST00000303354 FAF1Q9UNN5 650 aaPredicted RBP8.18□□□□□ -1.1
SCN9A-201ENST00000303354 ZNF197O14709 1029 aa8.18□□□□□ -1.1
SCN9A-201ENST00000303354 CUL3Q13618 768 aa8.18□□□□□ -1.1
SCN9A-201ENST00000303354 NOL9Q5SY16 702 aaKnown RBP8.18□□□□□ -1.1
SCN9A-201ENST00000303354 USP49Q70CQ1 688 aa8.18□□□□□ -1.1
SCN9A-201ENST00000303354 RHOT2Q8IXI1 618 aa8.18□□□□□ -1.1
SCN9A-201ENST00000303354 PTPRN2Q92932 1015 aa8.18□□□□□ -1.1
SCN9A-201ENST00000303354 RSPH9Q9H1X1 276 aaPredicted RBP8.18□□□□□ -1.1
SCN9A-201ENST00000303354 TASP1Q9H6P5 420 aa8.18□□□□□ -1.1
SCN9A-201ENST00000303354 CALCAP01258 141 aa8.18□□□□□ -1.1
SCN9A-201ENST00000303354 EPHB2P29323 1055 aa8.18□□□□□ -1.1
SCN9A-201ENST00000303354 SNAP47Q5SQN1 464 aa8.18□□□□□ -1.1
SCN9A-201ENST00000303354 OOSP2Q86WS3 158 aa8.18□□□□□ -1.1
SCN9A-201ENST00000303354 NEK9Q8TD19 979 aa8.18□□□□□ -1.1
SCN9A-201ENST00000303354 CYP26B1Q9NR63 512 aa8.18□□□□□ -1.1
SCN9A-201ENST00000303354 ARHGEF38Q9NXL2 777 aa8.18□□□□□ -1.1
SCN9A-201ENST00000303354 USP27XA6NNY8 438 aa8.18□□□□□ -1.1
SCN9A-201ENST00000303354 TRIM16O95361 564 aa8.18□□□□□ -1.1
SCN9A-201ENST00000303354 ELNP15502 786 aa8.18□□□□□ -1.1
SCN9A-201ENST00000303354 TNNI3P19429 210 aa8.18□□□□□ -1.1
SCN9A-201ENST00000303354 PPP4R3CPQ6ZMV5 832 aa8.18□□□□□ -1.1
SCN9A-201ENST00000303354 ACAD11Q709F0 780 aa8.18□□□□□ -1.1
SCN9A-201ENST00000303354 SLITRK1Q96PX8 696 aa8.18□□□□□ -1.1
SCN9A-201ENST00000303354 NT5C1AQ9BXI3 368 aa8.18□□□□□ -1.1
SCN9A-201ENST00000303354 DDIT4Q9NX09 232 aa8.18□□□□□ -1.1
SCN9A-201ENST00000303354 CRLS1Q9UJA2 301 aa8.18□□□□□ -1.1
SCN9A-201ENST00000303354 ARHGAP25P42331 645 aa8.18□□□□□ -1.1
SCN9A-201ENST00000303354 USP11P51784 963 aa8.18□□□□□ -1.1
SCN9A-201ENST00000303354 GRIN1Q05586 938 aa8.18□□□□□ -1.1
SCN9A-201ENST00000303354 WASHC5Q12768 1159 aa8.18□□□□□ -1.1
SCN9A-201ENST00000303354 SMAP1Q8IYB5 467 aaPredicted RBP8.18□□□□□ -1.1
SCN9A-201ENST00000303354 SCFD2Q8WU76 684 aa8.18□□□□□ -1.1
SCN9A-201ENST00000303354 MRPS31Q92665 395 aaKnown RBP8.18□□□□□ -1.1
SCN9A-201ENST00000303354 FHOD1Q9Y613 1164 aa8.18□□□□□ -1.1
SCN9A-201ENST00000303354 MAPK13O15264 365 aa8.18□□□□□ -1.1
SCN9A-201ENST00000303354 CD4P01730 458 aa8.18□□□□□ -1.1
SCN9A-201ENST00000303354 BFSP2Q13515 415 aa8.18□□□□□ -1.1
SCN9A-201ENST00000303354 LRRC36Q1X8D7 754 aa8.18□□□□□ -1.1
SCN9A-201ENST00000303354 DENND5BQ6ZUT9 1274 aa8.18□□□□□ -1.1
SCN9A-201ENST00000303354 CSGALNACT1Q8TDX6 532 aa8.18□□□□□ -1.1
SCN9A-201ENST00000303354 CHP1Q99653 195 aa8.18□□□□□ -1.1
SCN9A-201ENST00000303354 TUFT1Q9NNX1 390 aa8.18□□□□□ -1.1
SCN9A-201ENST00000303354 FGFR1OP2Q9NVK5 253 aa8.18□□□□□ -1.1
SCN9A-201ENST00000303354 CHMP2BQ9UQN3 213 aa8.18□□□□□ -1.1
SCN9A-201ENST00000303354 APOBEC2Q9Y235 224 aaKnown RBP8.18□□□□□ -1.1
SCN9A-201ENST00000303354 PRDM15P57071 1507 aaPredicted RBP8.18□□□□□ -1.1
SCN9A-201ENST00000303354 FAM200BP0CF97 657 aa8.17□□□□□ -1.1
SCN9A-201ENST00000303354 ODC1P11926 461 aa8.17□□□□□ -1.1
SCN9A-201ENST00000303354 EFNA5P52803 228 aa8.17□□□□□ -1.1
SCN9A-201ENST00000303354 DET1Q7L5Y6 550 aa8.17□□□□□ -1.1
SCN9A-201ENST00000303354 NUDCD3Q8IVD9 361 aa8.17□□□□□ -1.1
SCN9A-201ENST00000303354 ASAP3Q8TDY4 903 aa8.17□□□□□ -1.1
SCN9A-201ENST00000303354 MCM8Q9UJA3 840 aa8.17□□□□□ -1.1
SCN9A-201ENST00000303354 C3orf70A6NLC5 250 aaPredicted RBP8.17□□□□□ -1.1
SCN9A-201ENST00000303354 FNTAP49354 379 aa8.17□□□□□ -1.1
SCN9A-201ENST00000303354 AARSP49588 968 aaKnown RBP eCLIP8.17□□□□□ -1.1
SCN9A-201ENST00000303354 TAF6P49848 677 aa8.17□□□□□ -1.1
SCN9A-201ENST00000303354 EPHB4P54760 987 aa8.17□□□□□ -1.1
SCN9A-201ENST00000303354 STARD3Q14849 445 aa8.17□□□□□ -1.1
SCN9A-201ENST00000303354 LONRF1Q17RB8 773 aa8.17□□□□□ -1.1
SCN9A-201ENST00000303354 FBXW10Q5XX13 1052 aa8.17□□□□□ -1.1
SCN9A-201ENST00000303354 DLK2Q6UY11 383 aa8.17□□□□□ -1.1
SCN9A-201ENST00000303354 CDKL3Q8IVW4 592 aaPredicted RBP8.17□□□□□ -1.1
SCN9A-201ENST00000303354 SEPT8Q92599 483 aa8.17□□□□□ -1.1
SCN9A-201ENST00000303354 PFASO15067 1338 aa8.17□□□□□ -1.1
SCN9A-201ENST00000303354 TTC26A0AVF1 554 aa8.17□□□□□ -1.1
SCN9A-201ENST00000303354 SYCE1LA8MT33 242 aa8.17□□□□□ -1.1
SCN9A-201ENST00000303354 ZNF263O14978 683 aa8.17□□□□□ -1.1
SCN9A-201ENST00000303354 ENTPD3O75355 529 aa8.17□□□□□ -1.1
SCN9A-201ENST00000303354 ATP1A1P05023 1023 aaKnown RBP8.17□□□□□ -1.1
SCN9A-201ENST00000303354 CARSP49589 748 aaKnown RBP8.17□□□□□ -1.1
SCN9A-201ENST00000303354 LPAR1Q92633 364 aa8.17□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms