RNA–Protein interactions for RNA: ENST00000300302.9

HERPUD1-201, Transcript of homocysteine inducible ER protein with ubiquitin like domain 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HERPUD1, Length 1,862 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD1-201ENST00000300302 FBXO47Q5MNV8 452 aa16.75■□□□□ 0.27
HERPUD1-201ENST00000300302 NAA35Q5VZE5 725 aa16.75■□□□□ 0.27
HERPUD1-201ENST00000300302 USP38Q8NB14 1042 aa16.75■□□□□ 0.27
HERPUD1-201ENST00000300302 CPA5Q8WXQ8 436 aa16.75■□□□□ 0.27
HERPUD1-201ENST00000300302 TSC1Q92574 1164 aa16.75■□□□□ 0.27
HERPUD1-201ENST00000300302 CYFIP2Q96F07 1278 aa16.75■□□□□ 0.27
HERPUD1-201ENST00000300302 CAPZA3Q96KX2 299 aa16.75■□□□□ 0.27
HERPUD1-201ENST00000300302 MMS19Q96T76 1030 aa16.75■□□□□ 0.27
HERPUD1-201ENST00000300302 XRN2Q9H0D6 950 aaKnown RBP eCLIP16.75■□□□□ 0.278e-7■■■■□ 22.8
HERPUD1-201ENST00000300302 CXCL16Q9H2A7 254 aa16.75■□□□□ 0.27
HERPUD1-201ENST00000300302 RNF39Q9H2S5 420 aa16.75■□□□□ 0.27
HERPUD1-201ENST00000300302 SMYD3Q9H7B4 428 aa16.75■□□□□ 0.27
HERPUD1-201ENST00000300302 FAM105AQ9NUU6 356 aa16.75■□□□□ 0.27
HERPUD1-201ENST00000300302 TUBGCP4Q9UGJ1 667 aa16.75■□□□□ 0.27
HERPUD1-201ENST00000300302 NOL12Q9UGY1 213 aaKnown RBP eCLIP16.75■□□□□ 0.27
HERPUD1-201ENST00000300302 CEP83Q9Y592 693 aa16.75■□□□□ 0.27
HERPUD1-201ENST00000300302 V9GYY5 206 aaPredicted RBP16.75■□□□□ 0.27
HERPUD1-201ENST00000300302 A0A0U1RQG5 324 aaPredicted RBP16.74■□□□□ 0.27
HERPUD1-201ENST00000300302 BUB1BO60566 1050 aaPredicted RBP16.74■□□□□ 0.27
HERPUD1-201ENST00000300302 MTA2O94776 668 aa16.74■□□□□ 0.27
HERPUD1-201ENST00000300302 CYP3A5P20815 502 aa16.74■□□□□ 0.27
HERPUD1-201ENST00000300302 CDH8P55286 799 aa16.74■□□□□ 0.27
HERPUD1-201ENST00000300302 ERCC6LQ2NKX8 1250 aa16.74■□□□□ 0.27
HERPUD1-201ENST00000300302 MCOLN2Q8IZK6 566 aa16.74■□□□□ 0.27
HERPUD1-201ENST00000300302 UBE2Q2Q8WVN8 375 aa16.74■□□□□ 0.27
HERPUD1-201ENST00000300302 C18orf25Q96B23 403 aaPredicted RBP16.74■□□□□ 0.27
HERPUD1-201ENST00000300302 VCPIP1Q96JH7 1222 aa16.74■□□□□ 0.27
HERPUD1-201ENST00000300302 SEZ6LQ9BYH1 1024 aa16.74■□□□□ 0.27
HERPUD1-201ENST00000300302 ERVK-5Q9HDB9 667 aa16.74■□□□□ 0.27
HERPUD1-201ENST00000300302 RNF14Q9UBS8 474 aa16.74■□□□□ 0.27
HERPUD1-201ENST00000300302 CNOT8Q9UFF9 292 aaKnown RBP16.74■□□□□ 0.27
HERPUD1-201ENST00000300302 AMFRQ9UKV5 643 aa16.74■□□□□ 0.27
HERPUD1-201ENST00000300302 COG5Q9UP83 839 aa16.74■□□□□ 0.27
HERPUD1-201ENST00000300302 SQORQ9Y6N5 450 aa16.74■□□□□ 0.27
HERPUD1-201ENST00000300302 TRIP11Q15643 1979 aa16.74■□□□□ 0.27
HERPUD1-201ENST00000300302 FRMPD3Q5JV73 1810 aa16.74■□□□□ 0.27
HERPUD1-201ENST00000300302 ITGA4P13612 1032 aa16.73■□□□□ 0.27
HERPUD1-201ENST00000300302 PNPLA4P41247 253 aa16.73■□□□□ 0.27
HERPUD1-201ENST00000300302 NOMO3P69849 1222 aa16.73■□□□□ 0.27
HERPUD1-201ENST00000300302 TRIM71Q2Q1W2 868 aaKnown RBP16.73■□□□□ 0.27
HERPUD1-201ENST00000300302 CCDC181Q5TID7 509 aa16.73■□□□□ 0.27
HERPUD1-201ENST00000300302 LIN9Q5TKA1 542 aa16.73■□□□□ 0.27
HERPUD1-201ENST00000300302 C9orf57Q5W0N0 161 aa16.73■□□□□ 0.27
HERPUD1-201ENST00000300302 PASD1Q8IV76 773 aa16.73■□□□□ 0.27
HERPUD1-201ENST00000300302 TMEM130Q8N3G9 435 aa16.73■□□□□ 0.27
HERPUD1-201ENST00000300302 TMEM35BQ8NCS4 154 aa16.73■□□□□ 0.27
HERPUD1-201ENST00000300302 ZNF560Q96MR9 790 aa16.73■□□□□ 0.27
HERPUD1-201ENST00000300302 NUP85Q9BW27 656 aa16.73■□□□□ 0.27
HERPUD1-201ENST00000300302 ZNF518BQ9C0D4 1074 aa16.73■□□□□ 0.27
HERPUD1-201ENST00000300302 SDCBP2Q9H190 292 aa16.73■□□□□ 0.27
HERPUD1-201ENST00000300302 UNC93B1Q9H1C4 597 aa16.73■□□□□ 0.27
HERPUD1-201ENST00000300302 AGO3Q9H9G7 860 aaKnown RBP16.73■□□□□ 0.27
HERPUD1-201ENST00000300302 AVENQ9NQS1 362 aaPredicted RBP16.73■□□□□ 0.27
HERPUD1-201ENST00000300302 PADI3Q9ULW8 664 aa16.73■□□□□ 0.27
HERPUD1-201ENST00000300302 PCDHGC3Q9UN70 934 aa16.73■□□□□ 0.27
HERPUD1-201ENST00000300302 PHF24Q9UPV7 400 aa16.73■□□□□ 0.27
HERPUD1-201ENST00000300302 PDCD11Q14690 1871 aaKnown RBP16.73■□□□□ 0.27
HERPUD1-201ENST00000300302 CES2O00748 559 aa16.73■□□□□ 0.27
HERPUD1-201ENST00000300302 ZNF185O15231 689 aa16.73■□□□□ 0.27
HERPUD1-201ENST00000300302 CILPO75339 1184 aa16.73■□□□□ 0.27
HERPUD1-201ENST00000300302 KIF4AO95239 1232 aa16.73■□□□□ 0.27
HERPUD1-201ENST00000300302 GHRP10912 638 aa16.73■□□□□ 0.27
HERPUD1-201ENST00000300302 CD19P15391 556 aa16.73■□□□□ 0.27
HERPUD1-201ENST00000300302 BRD2P25440 801 aaKnown RBP16.73■□□□□ 0.27
HERPUD1-201ENST00000300302 PAFAH1B1P43034 410 aa16.73■□□□□ 0.27
HERPUD1-201ENST00000300302 RAB27AP51159 221 aa16.73■□□□□ 0.27
HERPUD1-201ENST00000300302 RAD23BP54727 409 aa16.73■□□□□ 0.27
HERPUD1-201ENST00000300302 INCA1Q0VD86 236 aa16.73■□□□□ 0.27
HERPUD1-201ENST00000300302 NAA30Q147X3 362 aaPredicted RBP16.73■□□□□ 0.27
HERPUD1-201ENST00000300302 ELF2Q15723 593 aa16.73■□□□□ 0.27
HERPUD1-201ENST00000300302 C11orf63Q6NUN7 778 aa16.73■□□□□ 0.27
HERPUD1-201ENST00000300302 RSRC2Q7L4I2 434 aaKnown RBP16.73■□□□□ 0.27
HERPUD1-201ENST00000300302 NT5DC3Q86UY8 548 aa16.73■□□□□ 0.27
HERPUD1-201ENST00000300302 PHF13Q86YI8 300 aaPredicted RBP16.73■□□□□ 0.27
HERPUD1-201ENST00000300302 SLC43A3Q8NBI5 491 aa16.73■□□□□ 0.27
HERPUD1-201ENST00000300302 ZNF564Q8TBZ8 553 aaPredicted RBP16.73■□□□□ 0.27
HERPUD1-201ENST00000300302 TMEM176AQ96HP8 235 aa16.73■□□□□ 0.27
HERPUD1-201ENST00000300302 PSMB7Q99436 277 aa16.73■□□□□ 0.27
HERPUD1-201ENST00000300302 BARX2Q9UMQ3 279 aaPredicted RBP16.73■□□□□ 0.27
HERPUD1-201ENST00000300302 PACSIN2Q9UNF0 486 aaPredicted RBP16.73■□□□□ 0.27
HERPUD1-201ENST00000300302 GTF3C5Q9Y5Q8 519 aaPredicted RBP16.73■□□□□ 0.27
HERPUD1-201ENST00000300302 ATMINO43313 823 aaPredicted RBP16.72■□□□□ 0.27
HERPUD1-201ENST00000300302 TFRCP02786 760 aaKnown RBP16.72■□□□□ 0.27
HERPUD1-201ENST00000300302 CD52P31358 61 aa16.72■□□□□ 0.27
HERPUD1-201ENST00000300302 CXCR5P32302 372 aa16.72■□□□□ 0.27
HERPUD1-201ENST00000300302 C1QBPQ07021 282 aaKnown RBP16.72■□□□□ 0.27
HERPUD1-201ENST00000300302 LPIN1Q14693 890 aa16.72■□□□□ 0.27
HERPUD1-201ENST00000300302 MTFR1Q15390 333 aa16.72■□□□□ 0.27
HERPUD1-201ENST00000300302 TEX35Q5T0J7 233 aa16.72■□□□□ 0.27
HERPUD1-201ENST00000300302 MON1BQ7L1V2 547 aa16.72■□□□□ 0.27
HERPUD1-201ENST00000300302 CREG2Q8IUH2 290 aa16.72■□□□□ 0.27
HERPUD1-201ENST00000300302 COG1Q8WTW3 980 aa16.72■□□□□ 0.27
HERPUD1-201ENST00000300302 RABGGTAQ92696 567 aa16.72■□□□□ 0.27
HERPUD1-201ENST00000300302 TRAIPQ9BWF2 469 aa16.72■□□□□ 0.27
HERPUD1-201ENST00000300302 GOLPH3Q9H4A6 298 aa16.72■□□□□ 0.27
HERPUD1-201ENST00000300302 ABCB6Q9NP58 842 aa16.72■□□□□ 0.27
HERPUD1-201ENST00000300302 SLC38A7Q9NVC3 462 aa16.72■□□□□ 0.27
HERPUD1-201ENST00000300302 ADAM22Q9P0K1 906 aa16.72■□□□□ 0.27
HERPUD1-201ENST00000300302 SNX9Q9Y5X1 595 aa16.72■□□□□ 0.27
HERPUD1-201ENST00000300302 PIRO00625 290 aa16.71■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms