RNA–Protein interactions for RNA: ENST00000296051.6

HPS3-201, Transcript of HPS3, biogenesis of lysosomal organelles complex 2 subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HPS3, Length 4,665 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3-201ENST00000296051 SNX9Q9Y5X1 595 aa14.13□□□□□ -0.15
HPS3-201ENST00000296051 B2RBV5 119 aa14.12□□□□□ -0.15
HPS3-201ENST00000296051 NLRP11P59045 1033 aaKnown RBP14.12□□□□□ -0.15
HPS3-201ENST00000296051 RCN1Q15293 331 aa14.12□□□□□ -0.15
HPS3-201ENST00000296051 RPS6KA2Q15349 733 aa14.12□□□□□ -0.15
HPS3-201ENST00000296051 DUOXA2Q1HG44 320 aa14.12□□□□□ -0.15
HPS3-201ENST00000296051 NAF1Q96HR8 494 aaKnown RBP14.12□□□□□ -0.15
HPS3-201ENST00000296051 KDM4CQ9H3R0 1056 aa14.12□□□□□ -0.15
HPS3-201ENST00000296051 CTNNAL1Q9UBT7 734 aa14.12□□□□□ -0.15
HPS3-201ENST00000296051 STRIP2Q9ULQ0 834 aa14.12□□□□□ -0.15
HPS3-201ENST00000296051 MAGEB2O15479 319 aa14.12□□□□□ -0.15
HPS3-201ENST00000296051 ZBED1O96006 694 aa14.12□□□□□ -0.15
HPS3-201ENST00000296051 CAV1Q03135 178 aa14.12□□□□□ -0.15
HPS3-201ENST00000296051 KCNA1Q09470 495 aa14.12□□□□□ -0.15
HPS3-201ENST00000296051 WDR75Q8IWA0 830 aaKnown RBP14.12□□□□□ -0.15
HPS3-201ENST00000296051 AGGF1Q8N302 714 aaeCLIP14.12□□□□□ -0.152e-6■■□□□ 12.3
HPS3-201ENST00000296051 FBXL13Q8NEE6 735 aa14.12□□□□□ -0.15
HPS3-201ENST00000296051 CDKL2Q92772 493 aa14.12□□□□□ -0.15
HPS3-201ENST00000296051 MAP3K20Q9NYL2 800 aaKnown RBP14.12□□□□□ -0.15
HPS3-201ENST00000296051 PRRG1O14668 218 aa14.12□□□□□ -0.15
HPS3-201ENST00000296051 ORC2Q13416 577 aaPredicted RBP14.12□□□□□ -0.15
HPS3-201ENST00000296051 HIF1AQ16665 826 aa14.12□□□□□ -0.15
HPS3-201ENST00000296051 DEFB115Q30KQ5 88 aa14.12□□□□□ -0.15
HPS3-201ENST00000296051 NUDCD3Q8IVD9 361 aa14.12□□□□□ -0.15
HPS3-201ENST00000296051 AFAP1L2Q8N4X5 818 aa14.12□□□□□ -0.15
HPS3-201ENST00000296051 MIEF2Q96C03 454 aa14.12□□□□□ -0.15
HPS3-201ENST00000296051 OSBPL8Q9BZF1 889 aa14.12□□□□□ -0.15
HPS3-201ENST00000296051 SUDS3Q9H7L9 328 aaPredicted RBP14.12□□□□□ -0.15
HPS3-201ENST00000296051 PHTF1Q9UMS5 762 aa14.12□□□□□ -0.15
HPS3-201ENST00000296051 TRIM33Q9UPN9 1127 aa14.12□□□□□ -0.15
HPS3-201ENST00000296051 PIK3R2O00459 728 aa14.12□□□□□ -0.15
HPS3-201ENST00000296051 DDX3XO00571 662 aaKnown RBP eCLIP14.12□□□□□ -0.155e-8■■■■□ 22.3
HPS3-201ENST00000296051 GPC4O75487 556 aa14.12□□□□□ -0.15
HPS3-201ENST00000296051 CYP2C8P10632 490 aa14.12□□□□□ -0.15
HPS3-201ENST00000296051 RPL21P46778 160 aaKnown RBP14.12□□□□□ -0.15
HPS3-201ENST00000296051 PRKCEQ02156 737 aa14.12□□□□□ -0.15
HPS3-201ENST00000296051 EFCAB12Q6NXP0 572 aa14.12□□□□□ -0.15
HPS3-201ENST00000296051 RNF168Q8IYW5 571 aaPredicted RBP14.12□□□□□ -0.15
HPS3-201ENST00000296051 IPO11Q9UI26 975 aaKnown RBP14.12□□□□□ -0.15
HPS3-201ENST00000296051 AGAP1Q9UPQ3 857 aa14.12□□□□□ -0.15
HPS3-201ENST00000296051 LOC100653049A0A140TA62 436 aa14.11□□□□□ -0.15
HPS3-201ENST00000296051 E2F8A0AVK6 867 aa14.11□□□□□ -0.15
HPS3-201ENST00000296051 H3BRJ5 948 aa14.11□□□□□ -0.15
HPS3-201ENST00000296051 KRT34O76011 436 aa14.11□□□□□ -0.15
HPS3-201ENST00000296051 SGPL1O95470 568 aa14.11□□□□□ -0.15
HPS3-201ENST00000296051 GNA15P30679 374 aa14.11□□□□□ -0.15
HPS3-201ENST00000296051 CPT1AP50416 773 aa14.11□□□□□ -0.15
HPS3-201ENST00000296051 NR1H3Q13133 447 aa14.11□□□□□ -0.15
HPS3-201ENST00000296051 LAMC2Q13753 1193 aa14.11□□□□□ -0.15
HPS3-201ENST00000296051 PGBD3Q8N328 593 aa14.11□□□□□ -0.15
HPS3-201ENST00000296051 TRIML2Q8N7C3 387 aa14.11□□□□□ -0.15
HPS3-201ENST00000296051 ATP8B4Q8TF62 1192 aa14.11□□□□□ -0.15
HPS3-201ENST00000296051 PGBD4Q96DM1 585 aa14.11□□□□□ -0.15
HPS3-201ENST00000296051 ATXN7L3BQ96GX2 97 aa14.11□□□□□ -0.15
HPS3-201ENST00000296051 ZSWIM1Q9BR11 485 aa14.11□□□□□ -0.15
HPS3-201ENST00000296051 TSSK1BQ9BXA7 367 aa14.11□□□□□ -0.15
HPS3-201ENST00000296051 ZWINTO95229 277 aa14.11□□□□□ -0.15
HPS3-201ENST00000296051 RARGP13631 454 aa14.11□□□□□ -0.15
HPS3-201ENST00000296051 SATB1Q01826 763 aa14.11□□□□□ -0.15
HPS3-201ENST00000296051 THOC5Q13769 683 aaKnown RBP14.11□□□□□ -0.15
HPS3-201ENST00000296051 HSP90AA5PQ58FG0 334 aa14.11□□□□□ -0.15
HPS3-201ENST00000296051 KRT80Q6KB66 452 aa14.11□□□□□ -0.15
HPS3-201ENST00000296051 MORC4Q8TE76 937 aa14.11□□□□□ -0.15
HPS3-201ENST00000296051 ACP6Q9NPH0 428 aa14.11□□□□□ -0.15
HPS3-201ENST00000296051 STARD7Q9NQZ5 370 aa14.11□□□□□ -0.15
HPS3-201ENST00000296051 HSPBP1Q9NZL4 362 aa14.11□□□□□ -0.15
HPS3-201ENST00000296051 C15orf41Q9Y2V0 281 aa14.11□□□□□ -0.15
HPS3-201ENST00000296051 MYO9BQ13459 2157 aa14.11□□□□□ -0.15
HPS3-201ENST00000296051 HOXA7P31268 230 aaPredicted RBP14.11□□□□□ -0.15
HPS3-201ENST00000296051 ATG16L1Q676U5 607 aa14.11□□□□□ -0.15
HPS3-201ENST00000296051 FBXO16Q8IX29 292 aaPredicted RBP14.11□□□□□ -0.15
HPS3-201ENST00000296051 KRT35Q92764 455 aa14.11□□□□□ -0.15
HPS3-201ENST00000296051 TATDN2Q93075 761 aa14.11□□□□□ -0.15
HPS3-201ENST00000296051 RBM41Q96IZ5 413 aaKnown RBP14.11□□□□□ -0.15
HPS3-201ENST00000296051 POP1Q99575 1024 aaKnown RBP14.11□□□□□ -0.15
HPS3-201ENST00000296051 TRIM56Q9BRZ2 755 aaKnown RBP14.11□□□□□ -0.15
HPS3-201ENST00000296051 VPS11Q9H270 941 aa14.11□□□□□ -0.15
HPS3-201ENST00000296051 TRPC7Q9HCX4 862 aa14.11□□□□□ -0.15
HPS3-201ENST00000296051 KCNH7Q9NS40 1196 aa14.11□□□□□ -0.15
HPS3-201ENST00000296051 CHMP2BQ9UQN3 213 aa14.11□□□□□ -0.15
HPS3-201ENST00000296051 APOBEC2Q9Y235 224 aaKnown RBP14.11□□□□□ -0.15
HPS3-201ENST00000296051 TACC3Q9Y6A5 838 aa14.11□□□□□ -0.15
HPS3-201ENST00000296051 CREB3O43889 395 aa14.11□□□□□ -0.15
HPS3-201ENST00000296051 RAG1P15918 1043 aa14.11□□□□□ -0.15
HPS3-201ENST00000296051 KRT4P19013 534 aa14.11□□□□□ -0.15
HPS3-201ENST00000296051 BTKQ06187 659 aa14.11□□□□□ -0.15
HPS3-201ENST00000296051 DEPDC1BQ8WUY9 529 aa14.11□□□□□ -0.15
HPS3-201ENST00000296051 ARHGEF26Q96DR7 871 aa14.11□□□□□ -0.15
HPS3-201ENST00000296051 LRGUKQ96M69 825 aa14.11□□□□□ -0.15
HPS3-201ENST00000296051 KIFC3Q9BVG8 833 aa14.11□□□□□ -0.15
HPS3-201ENST00000296051 MANSC4A6NHS7 340 aaPredicted RBP14.1□□□□□ -0.15
HPS3-201ENST00000296051 M0QYV0 167 aa14.1□□□□□ -0.15
HPS3-201ENST00000296051 VCAM1P19320 739 aa14.1□□□□□ -0.15
HPS3-201ENST00000296051 KRT33BQ14525 404 aa14.1□□□□□ -0.15
HPS3-201ENST00000296051 MXD4Q14582 209 aaPredicted RBP14.1□□□□□ -0.15
HPS3-201ENST00000296051 PREPLQ4J6C6 727 aaPredicted RBP14.1□□□□□ -0.15
HPS3-201ENST00000296051 C3orf62Q6ZUJ4 267 aa14.1□□□□□ -0.15
HPS3-201ENST00000296051 TRIM42Q8IWZ5 723 aa14.1□□□□□ -0.15
HPS3-201ENST00000296051 CDCA5Q96FF9 252 aa14.1□□□□□ -0.15
HPS3-201ENST00000296051 TMEM169Q96HH4 297 aa14.1□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms