RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 ENO4A6NNW6 628 aa13.37□□□□□ -0.27
LIG1-201ENST00000263274 F8VP50 259 aa13.37□□□□□ -0.27
LIG1-201ENST00000263274 PLSCR1O15162 318 aa13.37□□□□□ -0.27
LIG1-201ENST00000263274 ZNF862O60290 1169 aa13.37□□□□□ -0.27
LIG1-201ENST00000263274 NR3C2P08235 984 aa13.37□□□□□ -0.27
LIG1-201ENST00000263274 NCKAP1LP55160 1127 aa13.37□□□□□ -0.27
LIG1-201ENST00000263274 CRYMQ14894 314 aa13.37□□□□□ -0.27
LIG1-201ENST00000263274 ZBTB41Q5SVQ8 909 aa13.37□□□□□ -0.27
LIG1-201ENST00000263274 RSBN1LQ6PCB5 846 aaPredicted RBP13.37□□□□□ -0.27
LIG1-201ENST00000263274 CLEC4DQ8WXI8 215 aa13.37□□□□□ -0.27
LIG1-201ENST00000263274 ATP6V0A1Q93050 837 aa13.37□□□□□ -0.27
LIG1-201ENST00000263274 ATG4CQ96DT6 458 aa13.37□□□□□ -0.27
LIG1-201ENST00000263274 GRIN3BO60391 1043 aa13.37□□□□□ -0.27
LIG1-201ENST00000263274 MTA2O94776 668 aa13.37□□□□□ -0.27
LIG1-201ENST00000263274 UPP2O95045 317 aa13.37□□□□□ -0.27
LIG1-201ENST00000263274 IVDP26440 423 aa13.37□□□□□ -0.27
LIG1-201ENST00000263274 SLC1A1P43005 524 aa13.37□□□□□ -0.27
LIG1-201ENST00000263274 SPARCL1Q14515 664 aa13.37□□□□□ -0.27
LIG1-201ENST00000263274 DNAJC24Q6P3W2 148 aa13.37□□□□□ -0.27
LIG1-201ENST00000263274 B3GNT9Q6UX72 402 aa13.37□□□□□ -0.27
LIG1-201ENST00000263274 ECHDC2Q86YB7 292 aa13.37□□□□□ -0.27
LIG1-201ENST00000263274 BBOF1Q8ND07 529 aa13.37□□□□□ -0.27
LIG1-201ENST00000263274 FAM81BQ96LP2 452 aa13.37□□□□□ -0.27
LIG1-201ENST00000263274 MOV10L1Q9BXT6 1211 aaKnown RBP13.37□□□□□ -0.27
LIG1-201ENST00000263274 SPATS2LQ9NUQ6 558 aaKnown RBP13.37□□□□□ -0.27
LIG1-201ENST00000263274 PCSK1NQ9UHG2 260 aa13.37□□□□□ -0.27
LIG1-201ENST00000263274 RIPK3Q9Y572 518 aa13.37□□□□□ -0.27
LIG1-201ENST00000263274 IVNS1ABPQ9Y6Y0 642 aa13.37□□□□□ -0.27
LIG1-201ENST00000263274 ZNF536O15090 1300 aa13.37□□□□□ -0.27
LIG1-201ENST00000263274 A0A1W2PPM1 405 aa13.37□□□□□ -0.27
LIG1-201ENST00000263274 CBX6O95503 412 aa13.37□□□□□ -0.27
LIG1-201ENST00000263274 MAPTP10636 758 aaKnown RBP13.37□□□□□ -0.27
LIG1-201ENST00000263274 HSD17B4P51659 736 aa13.37□□□□□ -0.27
LIG1-201ENST00000263274 WNT7BP56706 349 aa13.37□□□□□ -0.27
LIG1-201ENST00000263274 CAV1Q03135 178 aa13.37□□□□□ -0.27
LIG1-201ENST00000263274 ANKS1BQ7Z6G8 1248 aa13.37□□□□□ -0.27
LIG1-201ENST00000263274 CDR2LQ86X02 465 aaPredicted RBP13.37□□□□□ -0.27
LIG1-201ENST00000263274 C12orf56Q8IXR9 622 aa13.37□□□□□ -0.27
LIG1-201ENST00000263274 TRIM11Q96F44 468 aa13.37□□□□□ -0.27
LIG1-201ENST00000263274 MAGEB18Q96M61 343 aa13.37□□□□□ -0.27
LIG1-201ENST00000263274 MYLK2Q9H1R3 596 aa13.37□□□□□ -0.27
LIG1-201ENST00000263274 RPAP3Q9H6T3 665 aaPredicted RBP13.37□□□□□ -0.27
LIG1-201ENST00000263274 RXFP1Q9HBX9 757 aa13.37□□□□□ -0.27
LIG1-201ENST00000263274 NPHS2Q9NP85 383 aa13.37□□□□□ -0.27
LIG1-201ENST00000263274 NXF1Q9UBU9 619 aaKnown RBP13.37□□□□□ -0.27
LIG1-201ENST00000263274 A0A0G2JND7 137 aa13.36□□□□□ -0.27
LIG1-201ENST00000263274 KRT19P08727 400 aa13.36□□□□□ -0.27
LIG1-201ENST00000263274 WEE2P0C1S8 567 aa13.36□□□□□ -0.27
LIG1-201ENST00000263274 UNGP13051 313 aaPredicted RBP13.36□□□□□ -0.27
LIG1-201ENST00000263274 TAC1P20366 129 aa13.36□□□□□ -0.27
LIG1-201ENST00000263274 GTF2H1P32780 548 aa13.36□□□□□ -0.27
LIG1-201ENST00000263274 RPA3P35244 121 aaPredicted RBP13.36□□□□□ -0.27
LIG1-201ENST00000263274 WDR4P57081 412 aaKnown RBP13.36□□□□□ -0.27
LIG1-201ENST00000263274 PRKCEQ02156 737 aa13.36□□□□□ -0.27
LIG1-201ENST00000263274 CCNG2Q16589 344 aa13.36□□□□□ -0.27
LIG1-201ENST00000263274 WLSQ5T9L3 541 aa13.36□□□□□ -0.27
LIG1-201ENST00000263274 TDRD10Q5VZ19 366 aaKnown RBP13.36□□□□□ -0.27
LIG1-201ENST00000263274 EEPD1Q7L9B9 569 aa13.36□□□□□ -0.27
LIG1-201ENST00000263274 PALM2Q8IXS6 379 aa13.36□□□□□ -0.27
LIG1-201ENST00000263274 TMC2Q8TDI7 906 aa13.36□□□□□ -0.27
LIG1-201ENST00000263274 MYPNQ86TC9 1320 aa13.36□□□□□ -0.27
LIG1-201ENST00000263274 FDX1P10109 184 aa13.36□□□□□ -0.27
LIG1-201ENST00000263274 SSTR1P30872 391 aa13.36□□□□□ -0.27
LIG1-201ENST00000263274 IRX1P78414 480 aaPredicted RBP13.36□□□□□ -0.27
LIG1-201ENST00000263274 ORC1Q13415 861 aa13.36□□□□□ -0.27
LIG1-201ENST00000263274 MAMLD1Q13495 774 aa13.36□□□□□ -0.27
LIG1-201ENST00000263274 TAF11Q15544 211 aa13.36□□□□□ -0.27
LIG1-201ENST00000263274 SNRNP48Q6IEG0 339 aaKnown RBP13.36□□□□□ -0.27
LIG1-201ENST00000263274 C12orf50Q8NA57 414 aaPredicted RBP13.36□□□□□ -0.27
LIG1-201ENST00000263274 FEZF2Q8TBJ5 459 aa13.36□□□□□ -0.27
LIG1-201ENST00000263274 WNK4Q96J92 1243 aa13.36□□□□□ -0.27
LIG1-201ENST00000263274 CPSF2Q9P2I0 782 aaKnown RBP13.36□□□□□ -0.27
LIG1-201ENST00000263274 TP73O15350 636 aa13.35□□□□□ -0.27
LIG1-201ENST00000263274 TJP3O95049 919 aa13.35□□□□□ -0.27
LIG1-201ENST00000263274 SFNP31947 248 aa13.35□□□□□ -0.27
LIG1-201ENST00000263274 PCK1P35558 622 aa13.35□□□□□ -0.27
LIG1-201ENST00000263274 BASP1P80723 227 aaKnown RBP13.35□□□□□ -0.27
LIG1-201ENST00000263274 TFAMQ00059 246 aaKnown RBP13.35□□□□□ -0.27
LIG1-201ENST00000263274 BNIP1Q12981 228 aa13.35□□□□□ -0.27
LIG1-201ENST00000263274 CUL2Q13617 745 aa13.35□□□□□ -0.27
LIG1-201ENST00000263274 TXNRD3NBQ6F5E7 133 aa13.35□□□□□ -0.27
LIG1-201ENST00000263274 RHBDF2Q6PJF5 856 aa13.35□□□□□ -0.27
LIG1-201ENST00000263274 LVRNQ6Q4G3 990 aa13.35□□□□□ -0.27
LIG1-201ENST00000263274 ARMC2Q8NEN0 867 aa13.35□□□□□ -0.27
LIG1-201ENST00000263274 PYROXD1Q8WU10 500 aa13.35□□□□□ -0.27
LIG1-201ENST00000263274 ATP6V0A4Q9HBG4 840 aa13.35□□□□□ -0.27
LIG1-201ENST00000263274 PXMP2Q9NR77 195 aa13.35□□□□□ -0.27
LIG1-201ENST00000263274 ANKEF1Q9NU02 776 aa13.35□□□□□ -0.27
LIG1-201ENST00000263274 GINM1Q9NU53 330 aa13.35□□□□□ -0.27
LIG1-201ENST00000263274 FBXO40Q9UH90 709 aa13.35□□□□□ -0.27
LIG1-201ENST00000263274 MAPK13O15264 365 aa13.35□□□□□ -0.27
LIG1-201ENST00000263274 KRT4P19013 534 aa13.35□□□□□ -0.27
LIG1-201ENST00000263274 GCNT1Q02742 428 aa13.35□□□□□ -0.27
LIG1-201ENST00000263274 SCARA3Q6AZY7 606 aa13.35□□□□□ -0.27
LIG1-201ENST00000263274 RFX8Q6ZV50 586 aa13.35□□□□□ -0.27
LIG1-201ENST00000263274 CCDC60Q8IWA6 550 aaPredicted RBP13.35□□□□□ -0.27
LIG1-201ENST00000263274 OR5B17Q8NGF7 314 aa13.35□□□□□ -0.27
LIG1-201ENST00000263274 RSAD2Q8WXG1 361 aa13.35□□□□□ -0.27
LIG1-201ENST00000263274 SENP7Q9BQF6 1050 aa13.35□□□□□ -0.27
LIG1-201ENST00000263274 UBN1Q9NPG3 1134 aa13.35□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms