RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 DDX3XO00571 662 aaKnown RBP eCLIP12.27□□□□□ -0.443e-16■■■■■ 29.1
VPS4A-201ENST00000254950 HOXA2O43364 376 aa12.27□□□□□ -0.44
VPS4A-201ENST00000254950 BUB1BO60566 1050 aaPredicted RBP12.27□□□□□ -0.44
VPS4A-201ENST00000254950 NFICP08651 508 aa12.27□□□□□ -0.44
VPS4A-201ENST00000254950 CPB1P15086 417 aa12.27□□□□□ -0.44
VPS4A-201ENST00000254950 GRM5P41594 1212 aa12.27□□□□□ -0.44
VPS4A-201ENST00000254950 ITGA7Q13683 1181 aa12.27□□□□□ -0.44
VPS4A-201ENST00000254950 SNX17Q15036 470 aa12.27□□□□□ -0.44
VPS4A-201ENST00000254950 GLE1Q53GS7 698 aaKnown RBP12.27□□□□□ -0.44
VPS4A-201ENST00000254950 TPCN2Q8NHX9 752 aa12.27□□□□□ -0.44
VPS4A-201ENST00000254950 SHC3Q92529 594 aa12.27□□□□□ -0.44
VPS4A-201ENST00000254950 HSPH1Q92598 858 aa12.27□□□□□ -0.44
VPS4A-201ENST00000254950 RNF25Q96BH1 459 aaPredicted RBP12.27□□□□□ -0.44
VPS4A-201ENST00000254950 PARD6BQ9BYG5 372 aa12.27□□□□□ -0.44
VPS4A-201ENST00000254950 GOLGA6BA6NDN3 693 aa12.27□□□□□ -0.45
VPS4A-201ENST00000254950 GPR25O00155 361 aa12.27□□□□□ -0.45
VPS4A-201ENST00000254950 CYB561D2O14569 222 aa12.27□□□□□ -0.45
VPS4A-201ENST00000254950 ZMYND10O75800 440 aa12.27□□□□□ -0.45
VPS4A-201ENST00000254950 ODC1P11926 461 aa12.27□□□□□ -0.45
VPS4A-201ENST00000254950 KCNA10Q16322 511 aa12.27□□□□□ -0.45
VPS4A-201ENST00000254950 GOLGA7BQ2TAP0 167 aa12.27□□□□□ -0.45
VPS4A-201ENST00000254950 C17orf99Q6UX52 265 aa12.27□□□□□ -0.45
VPS4A-201ENST00000254950 ACOT1Q86TX2 421 aa12.27□□□□□ -0.45
VPS4A-201ENST00000254950 UBA3Q8TBC4 463 aa12.27□□□□□ -0.45
VPS4A-201ENST00000254950 CYFIP2Q96F07 1278 aa12.27□□□□□ -0.45
VPS4A-201ENST00000254950 TMEM176AQ96HP8 235 aa12.27□□□□□ -0.45
VPS4A-201ENST00000254950 RNPC3Q96LT9 517 aaKnown RBP12.27□□□□□ -0.45
VPS4A-201ENST00000254950 TSPYL1Q9H0U9 437 aa12.27□□□□□ -0.45
VPS4A-201ENST00000254950 SLC12A6Q9UHW9 1150 aa12.27□□□□□ -0.45
VPS4A-201ENST00000254950 BARX2Q9UMQ3 279 aaPredicted RBP12.27□□□□□ -0.45
VPS4A-201ENST00000254950 CNTNAP2Q9UHC6 1331 aa12.27□□□□□ -0.45
VPS4A-201ENST00000254950 PPP1R37O75864 691 aa12.27□□□□□ -0.45
VPS4A-201ENST00000254950 LSM8O95777 96 aaKnown RBP12.27□□□□□ -0.45
VPS4A-201ENST00000254950 GNRH1P01148 92 aa12.27□□□□□ -0.45
VPS4A-201ENST00000254950 LCP1P13796 627 aa12.27□□□□□ -0.45
VPS4A-201ENST00000254950 ACADSBP45954 432 aa12.27□□□□□ -0.45
VPS4A-201ENST00000254950 SPATA2LQ8IUW3 424 aaPredicted RBP12.27□□□□□ -0.45
VPS4A-201ENST00000254950 ARFGAP2Q8N6H7 521 aa12.27□□□□□ -0.45
VPS4A-201ENST00000254950 ZNF606Q8WXB4 792 aa12.27□□□□□ -0.45
VPS4A-201ENST00000254950 PCYT2Q99447 389 aa12.27□□□□□ -0.45
VPS4A-201ENST00000254950 ADAM2Q99965 735 aa12.27□□□□□ -0.45
VPS4A-201ENST00000254950 ZMYND15Q9H091 742 aa12.27□□□□□ -0.45
VPS4A-201ENST00000254950 DDX20Q9UHI6 824 aaKnown RBP12.27□□□□□ -0.45
VPS4A-201ENST00000254950 HES2Q9Y543 173 aa12.27□□□□□ -0.45
VPS4A-201ENST00000254950 CAPN6Q9Y6Q1 641 aa12.27□□□□□ -0.45
VPS4A-201ENST00000254950 A0A0A6YYK5 440 aaPredicted RBP12.26□□□□□ -0.45
VPS4A-201ENST00000254950 PDGFRAP16234 1089 aa12.26□□□□□ -0.45
VPS4A-201ENST00000254950 RAP1GAPP47736 663 aa12.26□□□□□ -0.45
VPS4A-201ENST00000254950 ORC1Q13415 861 aa12.26□□□□□ -0.45
VPS4A-201ENST00000254950 PIGHQ14442 188 aaPredicted RBP12.26□□□□□ -0.45
VPS4A-201ENST00000254950 AMHR2Q16671 573 aa12.26□□□□□ -0.45
VPS4A-201ENST00000254950 PPP6R3Q5H9R7 873 aaPredicted RBP12.26□□□□□ -0.45
VPS4A-201ENST00000254950 CROCCP2Q86T23 111 aa12.26□□□□□ -0.45
VPS4A-201ENST00000254950 SPATA4Q8NEY3 305 aa12.26□□□□□ -0.45
VPS4A-201ENST00000254950 FEZF2Q8TBJ5 459 aa12.26□□□□□ -0.45
VPS4A-201ENST00000254950 MCEEQ96PE7 176 aa12.26□□□□□ -0.45
VPS4A-201ENST00000254950 PTPN18Q99952 460 aa12.26□□□□□ -0.45
VPS4A-201ENST00000254950 HEMGNQ9BXL5 484 aa12.26□□□□□ -0.45
VPS4A-201ENST00000254950 FZD8Q9H461 694 aa12.26□□□□□ -0.45
VPS4A-201ENST00000254950 RSAD1Q9HA92 442 aa12.26□□□□□ -0.45
VPS4A-201ENST00000254950 DDX56Q9NY93 547 aaKnown RBP12.26□□□□□ -0.45
VPS4A-201ENST00000254950 NOC2LQ9Y3T9 749 aaKnown RBP12.26□□□□□ -0.45
VPS4A-201ENST00000254950 RNF225M0QZC1 329 aaPredicted RBP12.26□□□□□ -0.45
VPS4A-201ENST00000254950 SGK1O00141 431 aa12.26□□□□□ -0.45
VPS4A-201ENST00000254950 IVLP07476 585 aa12.26□□□□□ -0.45
VPS4A-201ENST00000254950 COMTP21964 271 aa12.26□□□□□ -0.45
VPS4A-201ENST00000254950 MAP2K2P36507 400 aa12.26□□□□□ -0.45
VPS4A-201ENST00000254950 DR1Q01658 176 aa12.26□□□□□ -0.45
VPS4A-201ENST00000254950 MBTD1Q05BQ5 628 aa12.26□□□□□ -0.45
VPS4A-201ENST00000254950 CC2D1AQ6P1N0 951 aaPredicted RBP12.26□□□□□ -0.45
VPS4A-201ENST00000254950 ADGRF2Q8IZF7 708 aa12.26□□□□□ -0.45
VPS4A-201ENST00000254950 GAD1Q99259 594 aa12.26□□□□□ -0.45
VPS4A-201ENST00000254950 ST3GAL5Q9UNP4 418 aa12.26□□□□□ -0.45
VPS4A-201ENST00000254950 B4GALT4O60513 344 aa12.26□□□□□ -0.45
VPS4A-201ENST00000254950 CLEC16AQ2KHT3 1053 aa12.26□□□□□ -0.45
VPS4A-201ENST00000254950 FAM71AQ8IYT1 594 aa12.26□□□□□ -0.45
VPS4A-201ENST00000254950 TTC13Q8NBP0 860 aa12.26□□□□□ -0.45
VPS4A-201ENST00000254950 EPS8L1Q8TE68 723 aa12.26□□□□□ -0.45
VPS4A-201ENST00000254950 TRIM62Q9BVG3 475 aa12.26□□□□□ -0.45
VPS4A-201ENST00000254950 POLIQ9UNA4 740 aa12.26□□□□□ -0.45
VPS4A-201ENST00000254950 ATP11BQ9Y2G3 1177 aa12.26□□□□□ -0.45
VPS4A-201ENST00000254950 PIK3R2O00459 728 aa12.26□□□□□ -0.45
VPS4A-201ENST00000254950 PIGRP01833 764 aa12.26□□□□□ -0.45
VPS4A-201ENST00000254950 ATP4AP20648 1035 aa12.26□□□□□ -0.45
VPS4A-201ENST00000254950 ADSSP30520 456 aa12.26□□□□□ -0.45
VPS4A-201ENST00000254950 ATP11AP98196 1134 aa12.26□□□□□ -0.45
VPS4A-201ENST00000254950 TARBP2Q15633 366 aaKnown RBP12.26□□□□□ -0.45
VPS4A-201ENST00000254950 CCDC14Q49A88 953 aa12.26□□□□□ -0.45
VPS4A-201ENST00000254950 NOP9Q86U38 636 aaKnown RBP12.26□□□□□ -0.45
VPS4A-201ENST00000254950 COLEC11Q9BWP8 271 aa12.26□□□□□ -0.45
VPS4A-201ENST00000254950 GOLPH3Q9H4A6 298 aa12.26□□□□□ -0.45
VPS4A-201ENST00000254950 CHORDC1Q9UHD1 332 aaPredicted RBP12.26□□□□□ -0.45
VPS4A-201ENST00000254950 ADGRA3Q8IWK6 1321 aa12.25□□□□□ -0.45
VPS4A-201ENST00000254950 TADA3O75528 432 aa12.25□□□□□ -0.45
VPS4A-201ENST00000254950 ITGBL1O95965 494 aaPredicted RBP12.25□□□□□ -0.45
VPS4A-201ENST00000254950 EPHB4P54760 987 aa12.25□□□□□ -0.45
VPS4A-201ENST00000254950 CDH8P55286 799 aa12.25□□□□□ -0.45
VPS4A-201ENST00000254950 ENPEPQ07075 957 aa12.25□□□□□ -0.45
VPS4A-201ENST00000254950 RUFY4Q6ZNE9 571 aa12.25□□□□□ -0.45
VPS4A-201ENST00000254950 DCP1BQ8IZD4 617 aaKnown RBP12.25□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms