RNA–Protein interactions for RNA: YLR417W

VPS36, Transcript of Component of the ESCRT-II complex, yeastyeast

Gene VPS36, Length 1,701 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VPS36YLR417W YNL019CP53975 284 aa3.6□□□□□ -1.83
VPS36YLR417W YNL010WP53981 241 aaKnown RBP3.6□□□□□ -1.83
VPS36YLR417W PEX12Q04370 399 aa3.6□□□□□ -1.83
VPS36YLR417W RIB3Q99258 208 aa3.6□□□□□ -1.83
VPS36YLR417W RAD10P06838 210 aa3.59□□□□□ -1.83
VPS36YLR417W MEI4P29467 408 aa3.59□□□□□ -1.83
VPS36YLR417W TKL2P33315 681 aa3.59□□□□□ -1.83
VPS36YLR417W MAK5P38112 773 aaPredicted RBP3.59□□□□□ -1.83
VPS36YLR417W IPT1P38954 527 aa3.59□□□□□ -1.83
VPS36YLR417W YNL194CP40169 301 aa3.59□□□□□ -1.83
VPS36YLR417W YJR149WP47177 404 aa3.59□□□□□ -1.83
VPS36YLR417W SLD7Q08457 257 aa3.59□□□□□ -1.83
VPS36YLR417W IES4Q08561 116 aa3.59□□□□□ -1.83
VPS36YLR417W YPR011CQ12251 326 aa3.59□□□□□ -1.83
VPS36YLR417W PST1Q12355 444 aa3.59□□□□□ -1.83
VPS36YLR417W DCN1Q12395 269 aa3.59□□□□□ -1.83
VPS36YLR417W YPL247CQ12523 523 aa3.59□□□□□ -1.83
VPS36YLR417W MHF1Q3E835 90 aa3.59□□□□□ -1.83
VPS36YLR417W YHR213W-AQ8TGT4 77 aa3.59□□□□□ -1.83
VPS36YLR417W ERD2P18414 219 aa3.58□□□□□ -1.84
VPS36YLR417W ATG22P25568 528 aa3.58□□□□□ -1.84
VPS36YLR417W YIL059CP40520 121 aa3.58□□□□□ -1.84
VPS36YLR417W SER2P42941 309 aa3.58□□□□□ -1.84
VPS36YLR417W MNN5P46982 586 aa3.58□□□□□ -1.84
VPS36YLR417W DIE2P50076 525 aa3.58□□□□□ -1.84
VPS36YLR417W NQM1P53228 333 aaPredicted RBP3.58□□□□□ -1.84
VPS36YLR417W YOR289WQ12012 251 aaPredicted RBP3.58□□□□□ -1.84
VPS36YLR417W GTT2Q12390 233 aa3.58□□□□□ -1.84
VPS36YLR417W SAS5Q99314 248 aa3.58□□□□□ -1.84
VPS36YLR417W DSF1P0CX08 502 aa3.58□□□□□ -1.84
VPS36YLR417W YNR073CP0CX09 502 aa3.58□□□□□ -1.84
VPS36YLR417W TOM40P23644 387 aaKnown RBP3.58□□□□□ -1.84
VPS36YLR417W SPT14P32363 452 aa3.58□□□□□ -1.84
VPS36YLR417W ARC19P33204 171 aaKnown RBP3.58□□□□□ -1.84
VPS36YLR417W IPI1P38803 334 aaPredicted RBP3.58□□□□□ -1.84
VPS36YLR417W ECM14P38836 430 aa3.58□□□□□ -1.84
VPS36YLR417W SOK1P40317 901 aa3.58□□□□□ -1.84
VPS36YLR417W SWM2P40342 146 aa3.58□□□□□ -1.84
VPS36YLR417W FIS1P40515 155 aa3.58□□□□□ -1.84
VPS36YLR417W CWC23P52868 283 aaPredicted RBP3.58□□□□□ -1.84
VPS36YLR417W SNZ1Q03148 297 aa3.58□□□□□ -1.84
VPS36YLR417W AIM36Q03798 255 aa3.58□□□□□ -1.84
VPS36YLR417W TPO4Q12256 659 aa3.58□□□□□ -1.84
VPS36YLR417W PPH21P23594 369 aa3.57□□□□□ -1.84
VPS36YLR417W RNP1P32385 249 aa3.57□□□□□ -1.84
VPS36YLR417W HYM1P32464 399 aa3.57□□□□□ -1.84
VPS36YLR417W RFC4P40339 323 aaKnown RBP3.57□□□□□ -1.84
VPS36YLR417W BUD13P46947 266 aaPredicted RBP3.57□□□□□ -1.84
VPS36YLR417W LSM8P47093 109 aaKnown RBP3.57□□□□□ -1.84
VPS36YLR417W UBC12P52491 188 aa3.57□□□□□ -1.84
VPS36YLR417W YMR099CQ03161 297 aaKnown RBP3.57□□□□□ -1.84
VPS36YLR417W HPT1Q04178 221 aaKnown RBP3.57□□□□□ -1.84
VPS36YLR417W TRM12Q04235 462 aa3.57□□□□□ -1.84
VPS36YLR417W HEM25Q07534 307 aa3.57□□□□□ -1.84
VPS36YLR417W BNI1P41832 1953 aa3.56□□□□□ -1.84
VPS36YLR417W YGL041W-AP0C5N3 154 aa3.56□□□□□ -1.84
VPS36YLR417W UBC8P28263 218 aa3.56□□□□□ -1.84
VPS36YLR417W AVT2P39981 480 aa3.56□□□□□ -1.84
VPS36YLR417W IRC18P47056 224 aa3.56□□□□□ -1.84
VPS36YLR417W MGA1P53050 456 aa3.56□□□□□ -1.84
VPS36YLR417W YDR249CQ03787 373 aa3.56□□□□□ -1.84
VPS36YLR417W FCF1Q05498 189 aaPredicted RBP3.56□□□□□ -1.84
VPS36YLR417W MRX4Q12467 430 aa3.56□□□□□ -1.84
VPS36YLR417W RPL28P02406 149 aaKnown RBP3.56□□□□□ -1.84
VPS36YLR417W CCA1P21269 546 aa3.56□□□□□ -1.84
VPS36YLR417W PTM1P32857 523 aa3.56□□□□□ -1.84
VPS36YLR417W PRY2P36110 329 aa3.56□□□□□ -1.84
VPS36YLR417W NUP57P48837 541 aa3.56□□□□□ -1.84
VPS36YLR417W MDM34P53083 459 aa3.56□□□□□ -1.84
VPS36YLR417W TOS8P53147 276 aa3.56□□□□□ -1.84
VPS36YLR417W JLP1Q12358 412 aa3.56□□□□□ -1.84
VPS36YLR417W YDL012CQ12489 107 aa3.56□□□□□ -1.84
VPS36YLR417W CMC2Q3E7A4 109 aa3.56□□□□□ -1.84
VPS36YLR417W MHF2Q3E829 80 aa3.56□□□□□ -1.84
VPS36YLR417W YDR157WA0A023PZE8 133 aa3.55□□□□□ -1.84
VPS36YLR417W YCR090CP25654 182 aaKnown RBP3.55□□□□□ -1.84
VPS36YLR417W FMT1P32785 401 aa3.55□□□□□ -1.84
VPS36YLR417W YBL010CP32788 280 aa3.55□□□□□ -1.84
VPS36YLR417W VPS51P36116 164 aa3.55□□□□□ -1.84
VPS36YLR417W ECM31P38122 312 aa3.55□□□□□ -1.84
VPS36YLR417W BRR6P53062 197 aa3.55□□□□□ -1.84
VPS36YLR417W ALG13P53178 202 aa3.55□□□□□ -1.84
VPS36YLR417W GTR2P53290 341 aa3.55□□□□□ -1.84
VPS36YLR417W LSM3P57743 89 aaKnown RBP3.55□□□□□ -1.84
VPS36YLR417W NHP10Q03435 203 aa3.55□□□□□ -1.84
VPS36YLR417W GPI11Q06636 219 aa3.55□□□□□ -1.84
VPS36YLR417W YPL229WQ99395 206 aa3.55□□□□□ -1.84
VPS36YLR417W REP2P03872 296 aa3.54□□□□□ -1.84
VPS36YLR417W URA6P15700 204 aa3.54□□□□□ -1.84
VPS36YLR417W YKE4P40544 346 aa3.54□□□□□ -1.84
VPS36YLR417W ZEO1Q08245 113 aa3.54□□□□□ -1.84
VPS36YLR417W YRA1Q12159 226 aaKnown RBP3.54□□□□□ -1.84
VPS36YLR417W PST2Q12335 198 aaKnown RBP3.54□□□□□ -1.84
VPS36YLR417W NSP1P14907 823 aaKnown RBP3.53□□□□□ -1.84
VPS36YLR417W SEC22P22214 214 aa3.53□□□□□ -1.84
VPS36YLR417W IDH1P28834 360 aaKnown RBP RIP-Chip data3.53□□□□□ -1.84not detected
VPS36YLR417W COS8P38723 381 aa3.53□□□□□ -1.84
VPS36YLR417W AIM18P38884 321 aa3.53□□□□□ -1.84
VPS36YLR417W HMF1P40037 129 aaKnown RBP3.53□□□□□ -1.84
VPS36YLR417W GTT1P40582 234 aa3.53□□□□□ -1.84
Retrieved 100 of 5,963 RNA–protein pairs in 53.1 ms