RNA–Protein interactions for RNA: YFR004W

RPN11, Transcript of Metalloprotease subunit of 19S regulatory particle, yeast

Gene RPN11, Length 921 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RPN11	YFR004W	YML003W	P0CF16	290 aa		5.14	□□□□□ -1.59
RPN11	YFR004W	RPS16A	P0CX51	143 aa	Known RBP	5.14	□□□□□ -1.59
RPN11	YFR004W	RPS16B	P0CX52	143 aa	Known RBP	5.14	□□□□□ -1.59
RPN11	YFR004W	SWD2	P36104	329 aa	Predicted RBP	5.14	□□□□□ -1.59
RPN11	YFR004W	AIM3	P38266	947 aa	Known RBP	5.14	□□□□□ -1.59
RPN11	YFR004W	SDH8	P38345	138 aa		5.14	□□□□□ -1.59
RPN11	YFR004W	IKI1	P38874	309 aa		5.14	□□□□□ -1.59
RPN11	YFR004W	PSD1	P39006	500 aa		5.14	□□□□□ -1.59
RPN11	YFR004W	PGD1	P40356	397 aa		5.14	□□□□□ -1.59
RPN11	YFR004W	IRC24	P40580	263 aa		5.14	□□□□□ -1.59
RPN11	YFR004W	MRX5	P47007	382 aa		5.14	□□□□□ -1.59
RPN11	YFR004W	GWT1	P47026	490 aa		5.14	□□□□□ -1.59
RPN11	YFR004W	HHO1	P53551	258 aa		5.14	□□□□□ -1.59
RPN11	YFR004W	APJ1	P53940	528 aa		5.14	□□□□□ -1.59
RPN11	YFR004W	ADD37	Q03233	198 aa		5.14	□□□□□ -1.59
RPN11	YFR004W	API2	Q04413	109 aa		5.14	□□□□□ -1.59
RPN11	YFR004W	DCS1	Q06151	350 aa		5.14	□□□□□ -1.59
RPN11	YFR004W	MRX9	Q07349	420 aa	Known RBP	5.14	□□□□□ -1.59
RPN11	YFR004W	SDO1	Q07953	250 aa	Known RBP	5.14	□□□□□ -1.59
RPN11	YFR004W	MED7	Q08278	222 aa		5.14	□□□□□ -1.59
RPN11	YFR004W	YOR015W	Q12169	119 aa		5.14	□□□□□ -1.59
RPN11	YFR004W	YPR145C-A	Q2V2P0	78 aa		5.14	□□□□□ -1.59
RPN11	YFR004W	TDH3	P00359	332 aa	Known RBP RIP-Chip data	5.13	□□□□□ -1.59	not detected
RPN11	YFR004W	GDH1	P07262	454 aa	Known RBP	5.13	□□□□□ -1.59
RPN11	YFR004W	RPL30	P14120	105 aa	Known RBP	5.13	□□□□□ -1.59
RPN11	YFR004W	OCH1	P31755	480 aa		5.13	□□□□□ -1.59
RPN11	YFR004W	RIB5	P38145	238 aa		5.13	□□□□□ -1.59
RPN11	YFR004W	YHL037C	P38733	133 aa		5.13	□□□□□ -1.59
RPN11	YFR004W	GAT2	P40209	560 aa		5.13	□□□□□ -1.59
RPN11	YFR004W	SOL1	P50278	321 aa		5.13	□□□□□ -1.59
RPN11	YFR004W	PCP1	P53259	346 aa		5.13	□□□□□ -1.59
RPN11	YFR004W	MRPS17	Q03246	237 aa	Predicted RBP	5.13	□□□□□ -1.59
RPN11	YFR004W	GMC1	Q04399	608 aa		5.13	□□□□□ -1.59
RPN11	YFR004W	ZEO1	Q08245	113 aa		5.13	□□□□□ -1.59
RPN11	YFR004W	TGS1	Q12052	315 aa		5.13	□□□□□ -1.59
RPN11	YFR004W	COX19	Q3E731	98 aa		5.13	□□□□□ -1.59
RPN11	YFR004W	BPH1	P25356	2167 aa		5.12	□□□□□ -1.59
RPN11	YFR004W	CDC28	P00546	298 aa	Known RBP	5.12	□□□□□ -1.59
RPN11	YFR004W	ERG2	P32352	222 aa		5.12	□□□□□ -1.59
RPN11	YFR004W	RPL13B	P40212	199 aa	Known RBP	5.12	□□□□□ -1.59
RPN11	YFR004W	POG1	P40473	351 aa		5.12	□□□□□ -1.59
RPN11	YFR004W	SLX9	P53251	210 aa	Predicted RBP	5.12	□□□□□ -1.59
RPN11	YFR004W	YIF1	P53845	314 aa	Known RBP	5.12	□□□□□ -1.59
RPN11	YFR004W	YMR279C	Q03263	540 aa		5.12	□□□□□ -1.59
RPN11	YFR004W	FIT1	Q04433	528 aa		5.12	□□□□□ -1.59
RPN11	YFR004W	ARR3	Q06598	404 aa		5.12	□□□□□ -1.59
RPN11	YFR004W	YOR186W	Q08560	144 aa		5.12	□□□□□ -1.59
RPN11	YFR004W	FOL3	Q12676	427 aa	Predicted RBP	5.12	□□□□□ -1.59
RPN11	YFR004W	RPL13A	Q12690	199 aa	Predicted RBP	5.12	□□□□□ -1.59
RPN11	YFR004W	CYC7	P00045	113 aa		5.11	□□□□□ -1.59
RPN11	YFR004W	RPP2A	P05319	106 aa	Known RBP	5.11	□□□□□ -1.59
RPN11	YFR004W	HEM4	P06174	275 aa		5.11	□□□□□ -1.59
RPN11	YFR004W	MET3	P08536	511 aa		5.11	□□□□□ -1.59
RPN11	YFR004W	PEX4	P29340	183 aa		5.11	□□□□□ -1.59
RPN11	YFR004W	ATG8	P38182	117 aa	RIP-Chip data	5.11	□□□□□ -1.59	not detected
RPN11	YFR004W	ERV15	P38312	142 aa		5.11	□□□□□ -1.59
RPN11	YFR004W	SHG1	P38337	142 aa		5.11	□□□□□ -1.59
RPN11	YFR004W	YEA4	P40004	342 aa		5.11	□□□□□ -1.59
RPN11	YFR004W	GTT1	P40582	234 aa		5.11	□□□□□ -1.59
RPN11	YFR004W	VMA21	P41806	77 aa		5.11	□□□□□ -1.59
RPN11	YFR004W	YJR012C	P47087	207 aa		5.11	□□□□□ -1.59
RPN11	YFR004W	HHT1	P61830	136 aa		5.11	□□□□□ -1.59
RPN11	YFR004W	MEH1	Q02205	184 aa		5.11	□□□□□ -1.59
RPN11	YFR004W	YDR415C	Q04033	374 aa	Predicted RBP	5.11	□□□□□ -1.59
RPN11	YFR004W	YDR387C	Q04162	555 aa		5.11	□□□□□ -1.59
RPN11	YFR004W	YMR253C	Q04835	414 aa		5.11	□□□□□ -1.59
RPN11	YFR004W	YDR286C	Q05530	114 aa		5.11	□□□□□ -1.59
RPN11	YFR004W	COQ11	Q05892	277 aa		5.11	□□□□□ -1.59
RPN11	YFR004W	YDL086W	Q07505	273 aa		5.11	□□□□□ -1.59
RPN11	YFR004W	GRE1	Q08969	168 aa		5.11	□□□□□ -1.59
RPN11	YFR004W	COA2	Q3E823	68 aa		5.11	□□□□□ -1.59
RPN11	YFR004W	HUG1	Q6Q5K6	68 aa		5.11	□□□□□ -1.59
RPN11	YFR004W	MDN1	Q12019	4910 aa	Known RBP	5.11	□□□□□ -1.59
RPN11	YFR004W	RPL25	P04456	142 aa	Known RBP	5.1	□□□□□ -1.59
RPN11	YFR004W	ELO2	P25358	347 aa		5.1	□□□□□ -1.59
RPN11	YFR004W	RPB7	P34087	171 aa		5.1	□□□□□ -1.59
RPN11	YFR004W	FLO5	P38894	1075 aa		5.1	□□□□□ -1.59
RPN11	YFR004W	PAC2	P39937	518 aa		5.1	□□□□□ -1.59
RPN11	YFR004W	SPC25	P40014	221 aa		5.1	□□□□□ -1.59
RPN11	YFR004W	RPA34	P47006	233 aa	Predicted RBP	5.1	□□□□□ -1.59
RPN11	YFR004W	MSO1	P53604	210 aa	Known RBP	5.1	□□□□□ -1.59
RPN11	YFR004W	MRPL22	P53881	309 aa		5.1	□□□□□ -1.59
RPN11	YFR004W	TMA23	Q03525	211 aa		5.1	□□□□□ -1.59
RPN11	YFR004W	YMR082C	Q04276	118 aa		5.1	□□□□□ -1.59
RPN11	YFR004W	HOF1	Q05080	669 aa		5.1	□□□□□ -1.59
RPN11	YFR004W	USB1	Q12208	290 aa	Known RBP	5.1	□□□□□ -1.59
RPN11	YFR004W	AIM45	Q12480	344 aa	Known RBP	5.1	□□□□□ -1.59
RPN11	YFR004W	YOR192C-C	Q3E736	78 aa		5.1	□□□□□ -1.59
RPN11	YFR004W	YLR365W	Q7LIF2	110 aa		5.1	□□□□□ -1.59
RPN11	YFR004W	YBR126W-A	Q8TGU7	68 aa		5.1	□□□□□ -1.59
RPN11	YFR004W	RPB3	P16370	318 aa	Known RBP	5.09	□□□□□ -1.59
RPN11	YFR004W	SAG1	P20840	650 aa		5.09	□□□□□ -1.59
RPN11	YFR004W	FEN2	P25621	512 aa	Known RBP	5.09	□□□□□ -1.59
RPN11	YFR004W	DEG1	P31115	442 aa	Known RBP	5.09	□□□□□ -1.59
RPN11	YFR004W	SIP1	P32578	815 aa		5.09	□□□□□ -1.59
RPN11	YFR004W	MCH2	P36032	473 aa		5.09	□□□□□ -1.59
RPN11	YFR004W	SWD3	P38123	315 aa		5.09	□□□□□ -1.59
RPN11	YFR004W	POP2	P39008	433 aa		5.09	□□□□□ -1.59
RPN11	YFR004W	YER079W	P40052	210 aa	Known RBP	5.09	□□□□□ -1.59
RPN11	YFR004W	YIL077C	P40508	320 aa		5.09	□□□□□ -1.59

Retrieved 100 of 5,963 RNA–protein pairs in 63.2 ms