RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 TRIM11Q96F44 468 aa16.73■□□□□ 0.27
CPSF1-213ENST00000620219 TNFSF13BQ9Y275 285 aa16.73■□□□□ 0.27
CPSF1-213ENST00000620219 LRRD1A4D1F6 860 aa16.73■□□□□ 0.27
CPSF1-213ENST00000620219 LGR5O75473 907 aa16.73■□□□□ 0.27
CPSF1-213ENST00000620219 RECQL4O94761 1208 aa16.73■□□□□ 0.27
CPSF1-213ENST00000620219 TRIP13Q15645 432 aaPredicted RBP16.73■□□□□ 0.27
CPSF1-213ENST00000620219 HASPINQ8TF76 798 aa16.73■□□□□ 0.27
CPSF1-213ENST00000620219 ZNF446Q9NWS9 450 aa16.73■□□□□ 0.27
CPSF1-213ENST00000620219 PPME1Q9Y570 386 aa16.73■□□□□ 0.27
CPSF1-213ENST00000620219 PHIPQ8WWQ0 1821 aa16.73■□□□□ 0.27
CPSF1-213ENST00000620219 TARBP2Q15633 366 aaKnown RBP16.73■□□□□ 0.27
CPSF1-213ENST00000620219 FLRT1Q9NZU1 646 aa16.73■□□□□ 0.27
CPSF1-213ENST00000620219 DMGDHQ9UI17 866 aaKnown RBP16.73■□□□□ 0.27
CPSF1-213ENST00000620219 TLDC2A0PJX2 215 aa16.72■□□□□ 0.27
CPSF1-213ENST00000620219 SLC10A3P09131 477 aa16.72■□□□□ 0.27
CPSF1-213ENST00000620219 MCF2P10911 925 aa16.72■□□□□ 0.27
CPSF1-213ENST00000620219 COMTP21964 271 aa16.72■□□□□ 0.27
CPSF1-213ENST00000620219 PSMA2P25787 234 aa16.72■□□□□ 0.27
CPSF1-213ENST00000620219 AMPD2Q01433 879 aa16.72■□□□□ 0.27
CPSF1-213ENST00000620219 SLC27A1Q6PCB7 646 aa16.72■□□□□ 0.27
CPSF1-213ENST00000620219 UBLCP1Q8WVY7 318 aaPredicted RBP16.72■□□□□ 0.27
CPSF1-213ENST00000620219 ZNF516Q92618 1163 aa16.72■□□□□ 0.27
CPSF1-213ENST00000620219 NXF3Q9H4D5 531 aaKnown RBP16.72■□□□□ 0.27
CPSF1-213ENST00000620219 ZSCAN5CA6NGD5 496 aaPredicted RBP16.72■□□□□ 0.27
CPSF1-213ENST00000620219 PI4K2BG5E9Z4 385 aa16.72■□□□□ 0.27
CPSF1-213ENST00000620219 CAPN9O14815 690 aa16.72■□□□□ 0.27
CPSF1-213ENST00000620219 ITGA4P13612 1032 aa16.72■□□□□ 0.27
CPSF1-213ENST00000620219 H2AFXP16104 143 aaPredicted RBP16.72■□□□□ 0.27
CPSF1-213ENST00000620219 MBTD1Q05BQ5 628 aa16.72■□□□□ 0.27
CPSF1-213ENST00000620219 TRIM32Q13049 653 aa16.72■□□□□ 0.27
CPSF1-213ENST00000620219 NFIL3Q16649 462 aa16.72■□□□□ 0.27
CPSF1-213ENST00000620219 SGO2Q562F6 1265 aa16.72■□□□□ 0.27
CPSF1-213ENST00000620219 LLGL2Q6P1M3 1020 aa16.72■□□□□ 0.27
CPSF1-213ENST00000620219 ZNF365Q70YC5 407 aa16.72■□□□□ 0.27
CPSF1-213ENST00000620219 ACOT1Q86TX2 421 aa16.72■□□□□ 0.27
CPSF1-213ENST00000620219 FGD4Q96M96 766 aa16.72■□□□□ 0.27
CPSF1-213ENST00000620219 CALN1Q9BXU9 219 aa16.72■□□□□ 0.27
CPSF1-213ENST00000620219 STBD1O95210 358 aa16.72■□□□□ 0.27
CPSF1-213ENST00000620219 KIAA0100Q14667 2235 aaKnown RBP16.72■□□□□ 0.27
CPSF1-213ENST00000620219 PBKQ96KB5 322 aa16.72■□□□□ 0.27
CPSF1-213ENST00000620219 TIMM13Q9Y5L4 95 aaPredicted RBP16.72■□□□□ 0.27
CPSF1-213ENST00000620219 TOMM70O94826 608 aa16.71■□□□□ 0.27
CPSF1-213ENST00000620219 ACTN2P35609 894 aa16.71■□□□□ 0.27
CPSF1-213ENST00000620219 CALCOCO2Q13137 446 aa16.71■□□□□ 0.27
CPSF1-213ENST00000620219 PTGISQ16647 500 aa16.71■□□□□ 0.27
CPSF1-213ENST00000620219 FAM102AQ5T9C2 384 aaPredicted RBP16.71■□□□□ 0.27
CPSF1-213ENST00000620219 UHMK1Q8TAS1 419 aaKnown RBP16.71■□□□□ 0.27
CPSF1-213ENST00000620219 ZNF606Q8WXB4 792 aa16.71■□□□□ 0.27
CPSF1-213ENST00000620219 ACSF2Q96CM8 615 aaPredicted RBP16.71■□□□□ 0.27
CPSF1-213ENST00000620219 MCEEQ96PE7 176 aa16.71■□□□□ 0.27
CPSF1-213ENST00000620219 C16orf70Q9BSU1 422 aa16.71■□□□□ 0.27
CPSF1-213ENST00000620219 CDY2AQ9Y6F7 541 aa16.71■□□□□ 0.27
CPSF1-213ENST00000620219 HSF2BPO75031 334 aa16.71■□□□□ 0.27
CPSF1-213ENST00000620219 KRT1P04264 644 aa16.71■□□□□ 0.27
CPSF1-213ENST00000620219 ATP11AP98196 1134 aa16.71■□□□□ 0.27
CPSF1-213ENST00000620219 GCNT1Q02742 428 aa16.71■□□□□ 0.27
CPSF1-213ENST00000620219 PAK2Q13177 524 aa16.71■□□□□ 0.27
CPSF1-213ENST00000620219 FAM118BQ9BPY3 351 aa16.71■□□□□ 0.27
CPSF1-213ENST00000620219 LRFN2Q9ULH4 789 aa16.71■□□□□ 0.27
CPSF1-213ENST00000620219 NFU1Q9UMS0 254 aa16.71■□□□□ 0.27
CPSF1-213ENST00000620219 NOC2LQ9Y3T9 749 aaKnown RBP16.71■□□□□ 0.27
CPSF1-213ENST00000620219 KBTBD13C9JR72 458 aa16.71■□□□□ 0.27
CPSF1-213ENST00000620219 ASGR1P07306 291 aa16.71■□□□□ 0.27
CPSF1-213ENST00000620219 PRKCIP41743 596 aa16.71■□□□□ 0.27
CPSF1-213ENST00000620219 RWDD2BP57060 319 aa16.71■□□□□ 0.27
CPSF1-213ENST00000620219 ZNF410Q86VK4 478 aa16.71■□□□□ 0.27
CPSF1-213ENST00000620219 CEP57Q86XR8 500 aa16.71■□□□□ 0.27
CPSF1-213ENST00000620219 SHC3Q92529 594 aa16.71■□□□□ 0.27
CPSF1-213ENST00000620219 STARD7Q9NQZ5 370 aa16.71■□□□□ 0.27
CPSF1-213ENST00000620219 MYH9P35579 1960 aaKnown RBP16.71■□□□□ 0.27
CPSF1-213ENST00000620219 LMAN1P49257 510 aa16.7■□□□□ 0.26
CPSF1-213ENST00000620219 ASTE1Q2TB18 679 aaPredicted RBP16.7■□□□□ 0.26
CPSF1-213ENST00000620219 DCAF4L1Q3SXM0 396 aa16.7■□□□□ 0.26
CPSF1-213ENST00000620219 ACAD10Q6JQN1 1059 aa16.7■□□□□ 0.26
CPSF1-213ENST00000620219 EIF2AQ9BY44 585 aaKnown RBP16.7■□□□□ 0.26
CPSF1-213ENST00000620219 SMYD3Q9H7B4 428 aa16.7■□□□□ 0.26
CPSF1-213ENST00000620219 UPP2O95045 317 aa16.7■□□□□ 0.26
CPSF1-213ENST00000620219 CASP8Q14790 479 aa16.7■□□□□ 0.26
CPSF1-213ENST00000620219 RUFY4Q6ZNE9 571 aa16.7■□□□□ 0.26
CPSF1-213ENST00000620219 ZNF467Q7Z7K2 595 aaPredicted RBP16.7■□□□□ 0.26
CPSF1-213ENST00000620219 CREG2Q8IUH2 290 aa16.7■□□□□ 0.26
CPSF1-213ENST00000620219 TMEM130Q8N3G9 435 aa16.7■□□□□ 0.26
CPSF1-213ENST00000620219 LPPQ93052 612 aa16.7■□□□□ 0.26
CPSF1-213ENST00000620219 BORCS6Q96GS4 357 aa16.7■□□□□ 0.26
CPSF1-213ENST00000620219 RNPC3Q96LT9 517 aaKnown RBP16.7■□□□□ 0.26
CPSF1-213ENST00000620219 CDHR5Q9HBB8 845 aa16.7■□□□□ 0.26
CPSF1-213ENST00000620219 IGKV6D-21A0A0A0MT36 114 aa16.7■□□□□ 0.26
CPSF1-213ENST00000620219 LOC102724159A0A0B4J2E5 919 aa16.7■□□□□ 0.26
CPSF1-213ENST00000620219 MAPK13O15264 365 aa16.7■□□□□ 0.26
CPSF1-213ENST00000620219 ZC3H11AO75152 810 aaKnown RBP eCLIP16.7■□□□□ 0.26
CPSF1-213ENST00000620219 POMCP01189 267 aa16.7■□□□□ 0.26
CPSF1-213ENST00000620219 PWP2Q15269 919 aaKnown RBP16.7■□□□□ 0.26
CPSF1-213ENST00000620219 HSPH1Q92598 858 aa16.7■□□□□ 0.26
CPSF1-213ENST00000620219 RABEP2Q9H5N1 569 aa16.7■□□□□ 0.26
CPSF1-213ENST00000620219 GOLGA2P5Q9HBQ8 144 aa16.7■□□□□ 0.26
CPSF1-213ENST00000620219 LRRC4Q9HBW1 653 aa16.7■□□□□ 0.26
CPSF1-213ENST00000620219 NEBLO76041 1014 aa16.7■□□□□ 0.26
CPSF1-213ENST00000620219 KCNA10Q16322 511 aa16.7■□□□□ 0.26
CPSF1-213ENST00000620219 HADHQ16836 314 aaKnown RBP16.7■□□□□ 0.26
CPSF1-213ENST00000620219 FAM117BQ6P1L5 589 aa16.7■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms