RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 WDR72Q3MJ13 1102 aa15.41■□□□□ 0.06
UPF1-211ENST00000600868 SPOPLQ6IQ16 392 aa15.41■□□□□ 0.06
UPF1-211ENST00000600868 PHLDB3Q6NSJ2 640 aa15.41■□□□□ 0.06
UPF1-211ENST00000600868 VSTM4Q8IW00 320 aa15.41■□□□□ 0.06
UPF1-211ENST00000600868 COLGALT1Q8NBJ5 622 aa15.41■□□□□ 0.06
UPF1-211ENST00000600868 NEK11Q8NG66 645 aa15.41■□□□□ 0.06
UPF1-211ENST00000600868 RABGGTAQ92696 567 aa15.41■□□□□ 0.06
UPF1-211ENST00000600868 TATDN2Q93075 761 aa15.41■□□□□ 0.06
UPF1-211ENST00000600868 FAM81BQ96LP2 452 aa15.41■□□□□ 0.06
UPF1-211ENST00000600868 PCMTD1Q96MG8 357 aaPredicted RBP15.41■□□□□ 0.06
UPF1-211ENST00000600868 ZNF558Q96NG5 402 aa15.41■□□□□ 0.06
UPF1-211ENST00000600868 MARCH5Q9NX47 278 aa15.41■□□□□ 0.06
UPF1-211ENST00000600868 FBXL5Q9UKA1 691 aa15.41■□□□□ 0.06
UPF1-211ENST00000600868 ADAM28Q9UKQ2 775 aa15.41■□□□□ 0.06
UPF1-211ENST00000600868 RWDD3Q9Y3V2 267 aa15.41■□□□□ 0.06
UPF1-211ENST00000600868 NUB1Q9Y5A7 615 aa15.41■□□□□ 0.06
UPF1-211ENST00000600868 TRAPPC3O43617 180 aa15.4■□□□□ 0.06
UPF1-211ENST00000600868 TADA2AO75478 443 aa15.4■□□□□ 0.06
UPF1-211ENST00000600868 NOL4O94818 638 aa15.4■□□□□ 0.06
UPF1-211ENST00000600868 ITGB1P05556 798 aa15.4■□□□□ 0.06
UPF1-211ENST00000600868 RFX1P22670 979 aa15.4■□□□□ 0.06
UPF1-211ENST00000600868 TBXAS1P24557 533 aaPredicted RBP15.4■□□□□ 0.06
UPF1-211ENST00000600868 GCNT1Q02742 428 aa15.4■□□□□ 0.06
UPF1-211ENST00000600868 LRMPQ12912 555 aa15.4■□□□□ 0.06
UPF1-211ENST00000600868 PTPN21Q16825 1174 aa15.4■□□□□ 0.06
UPF1-211ENST00000600868 TIGD5Q53EQ6 642 aa15.4■□□□□ 0.06
UPF1-211ENST00000600868 FIGNQ5HY92 759 aa15.4■□□□□ 0.06
UPF1-211ENST00000600868 SPECC1LQ69YQ0 1117 aa15.4■□□□□ 0.06
UPF1-211ENST00000600868 SMYD5Q6GMV2 418 aa15.4■□□□□ 0.06
UPF1-211ENST00000600868 CHRDL2Q6WN34 429 aa15.4■□□□□ 0.06
UPF1-211ENST00000600868 ENOSF1Q7L5Y1 443 aa15.4■□□□□ 0.06
UPF1-211ENST00000600868 LIMS2Q7Z4I7 341 aa15.4■□□□□ 0.06
UPF1-211ENST00000600868 SLC39A11Q8N1S5 342 aa15.4■□□□□ 0.06
UPF1-211ENST00000600868 IQCDQ96DY2 449 aa15.4■□□□□ 0.06
UPF1-211ENST00000600868 IGSF21Q96ID5 467 aa15.4■□□□□ 0.06
UPF1-211ENST00000600868 SUSD3Q96L08 255 aa15.4■□□□□ 0.06
UPF1-211ENST00000600868 NUP58Q9BVL2 599 aa15.4■□□□□ 0.06
UPF1-211ENST00000600868 NIF3L1Q9GZT8 377 aa15.4■□□□□ 0.06
UPF1-211ENST00000600868 GANQ9H2C0 597 aa15.4■□□□□ 0.06
UPF1-211ENST00000600868 UTP3Q9NQZ2 479 aaKnown RBP eCLIP15.4■□□□□ 0.06
UPF1-211ENST00000600868 FAM207AQ9NSI2 230 aaPredicted RBP15.4■□□□□ 0.06
UPF1-211ENST00000600868 SPG21Q9NZD8 308 aa15.4■□□□□ 0.06
UPF1-211ENST00000600868 NXF1Q9UBU9 619 aaKnown RBP15.4■□□□□ 0.06
UPF1-211ENST00000600868 PCDHB12Q9Y5F1 795 aa15.4■□□□□ 0.06
UPF1-211ENST00000600868 SNX9Q9Y5X1 595 aa15.4■□□□□ 0.06
UPF1-211ENST00000600868 KIAA1671Q9BY89 1806 aa15.39■□□□□ 0.05
UPF1-211ENST00000600868 A0A1W2PPC1 479 aa15.39■□□□□ 0.05
UPF1-211ENST00000600868 LINC01553A4QN01 128 aa15.39■□□□□ 0.05
UPF1-211ENST00000600868 NT5C1B-RDH14C9J2C7 533 aa15.39■□□□□ 0.05
UPF1-211ENST00000600868 F8W810 466 aa15.39■□□□□ 0.05
UPF1-211ENST00000600868 M0QZQ0 153 aa15.39■□□□□ 0.05
UPF1-211ENST00000600868 FAM163BP0C2L3 166 aa15.39■□□□□ 0.05
UPF1-211ENST00000600868 MYOGP15173 224 aa15.39■□□□□ 0.05
UPF1-211ENST00000600868 UCHL3P15374 230 aa15.39■□□□□ 0.05
UPF1-211ENST00000600868 CDC25BP30305 580 aa15.39■□□□□ 0.05
UPF1-211ENST00000600868 PPM1AP35813 382 aa15.39■□□□□ 0.05
UPF1-211ENST00000600868 PBX3P40426 434 aa15.39■□□□□ 0.05
UPF1-211ENST00000600868 TNNC1P63316 161 aa15.39■□□□□ 0.05
UPF1-211ENST00000600868 APBA1Q02410 837 aa15.39■□□□□ 0.05
UPF1-211ENST00000600868 ELAVL2Q12926 359 aaKnown RBP15.39■□□□□ 0.05
UPF1-211ENST00000600868 CUL2Q13617 745 aa15.39■□□□□ 0.05
UPF1-211ENST00000600868 RAB30Q15771 203 aa15.39■□□□□ 0.05
UPF1-211ENST00000600868 DPH6Q7L8W6 267 aa15.39■□□□□ 0.05
UPF1-211ENST00000600868 ARHGAP30Q7Z6I6 1101 aaPredicted RBP15.39■□□□□ 0.05
UPF1-211ENST00000600868 TMEM173Q86WV6 379 aaPredicted RBP15.39■□□□□ 0.05
UPF1-211ENST00000600868 ARHGEF19Q8IW93 802 aa15.39■□□□□ 0.05
UPF1-211ENST00000600868 PPM1KQ8N3J5 372 aa15.39■□□□□ 0.05
UPF1-211ENST00000600868 TOP6BLQ8N6T0 577 aa15.39■□□□□ 0.05
UPF1-211ENST00000600868 JAKMIP2Q96AA8 810 aa15.39■□□□□ 0.05
UPF1-211ENST00000600868 ELMO3Q96BJ8 720 aa15.39■□□□□ 0.05
UPF1-211ENST00000600868 SENP8Q96LD8 212 aa15.39■□□□□ 0.05
UPF1-211ENST00000600868 PLVAPQ9BX97 442 aa15.39■□□□□ 0.05
UPF1-211ENST00000600868 BCO2Q9BYV7 579 aa15.39■□□□□ 0.05
UPF1-211ENST00000600868 EDEM3Q9BZQ6 932 aa15.39■□□□□ 0.05
UPF1-211ENST00000600868 FAM124BQ9H5Z6 455 aaPredicted RBP15.39■□□□□ 0.05
UPF1-211ENST00000600868 CYP3A43Q9HB55 503 aa15.39■□□□□ 0.05
UPF1-211ENST00000600868 UBE2TQ9NPD8 197 aaPredicted RBP15.39■□□□□ 0.05
UPF1-211ENST00000600868 MSRAQ9UJ68 235 aa15.39■□□□□ 0.05
UPF1-211ENST00000600868 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP15.39■□□□□ 0.057e-8■■□□□ 12.6
UPF1-211ENST00000600868 GBF1Q92538 1859 aa15.38■□□□□ 0.05
UPF1-211ENST00000600868 ARHGEF37A1IGU5 675 aa15.38■□□□□ 0.05
UPF1-211ENST00000600868 CYB561D2O14569 222 aa15.38■□□□□ 0.05
UPF1-211ENST00000600868 EPHB6O15197 1021 aa15.38■□□□□ 0.05
UPF1-211ENST00000600868 CLSTN1O94985 981 aa15.38■□□□□ 0.05
UPF1-211ENST00000600868 EFEMP2O95967 443 aa15.38■□□□□ 0.05
UPF1-211ENST00000600868 CA3P07451 260 aa15.38■□□□□ 0.05
UPF1-211ENST00000600868 ODC1P11926 461 aa15.38■□□□□ 0.05
UPF1-211ENST00000600868 TRIM21P19474 475 aaKnown RBP15.38■□□□□ 0.05
UPF1-211ENST00000600868 BMPR1AP36894 532 aa15.38■□□□□ 0.05
UPF1-211ENST00000600868 ASPAP45381 313 aa15.38■□□□□ 0.05
UPF1-211ENST00000600868 BRCC3P46736 316 aa15.38■□□□□ 0.05
UPF1-211ENST00000600868 IQCEQ6IPM2 695 aa15.38■□□□□ 0.05
UPF1-211ENST00000600868 FUT10Q6P4F1 479 aa15.38■□□□□ 0.05
UPF1-211ENST00000600868 DSTYKQ6XUX3 929 aa15.38■□□□□ 0.05
UPF1-211ENST00000600868 RRAGAQ7L523 313 aa15.38■□□□□ 0.05
UPF1-211ENST00000600868 SPATA18Q8TC71 538 aa15.38■□□□□ 0.05
UPF1-211ENST00000600868 HASPINQ8TF76 798 aa15.38■□□□□ 0.05
UPF1-211ENST00000600868 BCL7CQ8WUZ0 217 aaPredicted RBP15.38■□□□□ 0.05
UPF1-211ENST00000600868 KREMEN1Q96MU8 473 aa15.38■□□□□ 0.05
UPF1-211ENST00000600868 SAMD11Q96NU1 681 aa15.38■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms