RNA–Protein interactions for RNA: ENST00000599716.5

SHKBP1-220, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-220ENST00000599716 WDR44Q5JSH3 913 aa9.47□□□□□ -0.89
SHKBP1-220ENST00000599716 TTC38Q5R3I4 469 aa9.47□□□□□ -0.89
SHKBP1-220ENST00000599716 SLC8B1Q6J4K2 584 aa9.47□□□□□ -0.89
SHKBP1-220ENST00000599716 PDXDC1Q6P996 788 aa9.47□□□□□ -0.89
SHKBP1-220ENST00000599716 ALKAL1Q6UXT8 129 aa9.47□□□□□ -0.89
SHKBP1-220ENST00000599716 RNF19BQ6ZMZ0 732 aa9.47□□□□□ -0.89
SHKBP1-220ENST00000599716 Q6ZS52 159 aa9.47□□□□□ -0.89
SHKBP1-220ENST00000599716 C4orf32Q8N8J7 132 aa9.47□□□□□ -0.89
SHKBP1-220ENST00000599716 ZNF461Q8TAF7 563 aa9.47□□□□□ -0.89
SHKBP1-220ENST00000599716 ERMNQ8TAM6 284 aa9.47□□□□□ -0.89
SHKBP1-220ENST00000599716 SNX29Q8TEQ0 813 aa9.47□□□□□ -0.89
SHKBP1-220ENST00000599716 ELSPBP1Q96BH3 223 aa9.47□□□□□ -0.89
SHKBP1-220ENST00000599716 PLIN2Q99541 437 aa9.47□□□□□ -0.89
SHKBP1-220ENST00000599716 CCDC94Q9BW85 323 aaPredicted RBP9.47□□□□□ -0.89
SHKBP1-220ENST00000599716 CRISPLD1Q9H336 500 aa9.47□□□□□ -0.89
SHKBP1-220ENST00000599716 LMAN1LQ9HAT1 526 aa9.47□□□□□ -0.89
SHKBP1-220ENST00000599716 PTPRHQ9HD43 1115 aa9.47□□□□□ -0.89
SHKBP1-220ENST00000599716 PRMT8Q9NR22 394 aaPredicted RBP9.47□□□□□ -0.89
SHKBP1-220ENST00000599716 ZSCAN32Q9NX65 697 aa9.47□□□□□ -0.89
SHKBP1-220ENST00000599716 GMEB2Q9UKD1 530 aa9.47□□□□□ -0.89
SHKBP1-220ENST00000599716 KCNH3Q9ULD8 1083 aa9.47□□□□□ -0.89
SHKBP1-220ENST00000599716 TNFSF13BQ9Y275 285 aa9.47□□□□□ -0.89
SHKBP1-220ENST00000599716 NUB1Q9Y5A7 615 aa9.47□□□□□ -0.89
SHKBP1-220ENST00000599716 INSL5Q9Y5Q6 135 aa9.47□□□□□ -0.89
SHKBP1-220ENST00000599716 PDCD11Q14690 1871 aaKnown RBP9.47□□□□□ -0.89
SHKBP1-220ENST00000599716 LAMA1P25391 3075 aa9.46□□□□□ -0.89
SHKBP1-220ENST00000599716 NPHP3-ACAD11A0A0J9YXS1 232 aa9.46□□□□□ -0.9
SHKBP1-220ENST00000599716 ARHGEF37A1IGU5 675 aa9.46□□□□□ -0.9
SHKBP1-220ENST00000599716 SLC38A8A6NNN8 435 aa9.46□□□□□ -0.9
SHKBP1-220ENST00000599716 LILRB5O75023 590 aa9.46□□□□□ -0.9
SHKBP1-220ENST00000599716 VNN2O95498 520 aa9.46□□□□□ -0.9
SHKBP1-220ENST00000599716 POU2F2P09086 479 aa9.46□□□□□ -0.9
SHKBP1-220ENST00000599716 TDGF1P13385 188 aa9.46□□□□□ -0.9
SHKBP1-220ENST00000599716 ATF2P15336 505 aa9.46□□□□□ -0.9
SHKBP1-220ENST00000599716 MCM4P33991 863 aa9.46□□□□□ -0.9
SHKBP1-220ENST00000599716 RBM25P49756 843 aaKnown RBP9.46□□□□□ -0.9
SHKBP1-220ENST00000599716 YARSP54577 528 aaKnown RBP9.46□□□□□ -0.9
SHKBP1-220ENST00000599716 MAPK7Q13164 816 aa9.46□□□□□ -0.9
SHKBP1-220ENST00000599716 PPP2R5AQ15172 486 aa9.46□□□□□ -0.9
SHKBP1-220ENST00000599716 IL17AQ16552 155 aa9.46□□□□□ -0.9
SHKBP1-220ENST00000599716 SOWAHCQ53LP3 525 aaPredicted RBP9.46□□□□□ -0.9
SHKBP1-220ENST00000599716 HEATR6Q6AI08 1181 aaKnown RBP9.46□□□□□ -0.9
SHKBP1-220ENST00000599716 PDZD4Q76G19 769 aaPredicted RBP9.46□□□□□ -0.9
SHKBP1-220ENST00000599716 TTC9BQ8N6N2 239 aa9.46□□□□□ -0.9
SHKBP1-220ENST00000599716 SHKBP1Q8TBC3 707 aa9.46□□□□□ -0.9
SHKBP1-220ENST00000599716 ZSCAN18Q8TBC5 510 aaPredicted RBP9.46□□□□□ -0.9
SHKBP1-220ENST00000599716 NELL1Q92832 810 aa9.46□□□□□ -0.9
SHKBP1-220ENST00000599716 ZFYVE19Q96K21 471 aa9.46□□□□□ -0.9
SHKBP1-220ENST00000599716 C8orf76Q96K31 380 aa9.46□□□□□ -0.9
SHKBP1-220ENST00000599716 UROC1Q96N76 676 aa9.46□□□□□ -0.9
SHKBP1-220ENST00000599716 TBC1D32Q96NH3 1257 aa9.46□□□□□ -0.9
SHKBP1-220ENST00000599716 ASB16Q96NS5 453 aa9.46□□□□□ -0.9
SHKBP1-220ENST00000599716 TCHPQ9BT92 498 aa9.46□□□□□ -0.9
SHKBP1-220ENST00000599716 TRMT61BQ9BVS5 477 aaKnown RBP9.46□□□□□ -0.9
SHKBP1-220ENST00000599716 OSBPL6Q9BZF3 934 aa9.46□□□□□ -0.9
SHKBP1-220ENST00000599716 HAPLN2Q9GZV7 340 aa9.46□□□□□ -0.9
SHKBP1-220ENST00000599716 ZFP14Q9HCL3 533 aa9.46□□□□□ -0.9
SHKBP1-220ENST00000599716 ZNF334Q9HCZ1 680 aaPredicted RBP9.46□□□□□ -0.9
SHKBP1-220ENST00000599716 KMT5AQ9NQR1 393 aa9.46□□□□□ -0.9
SHKBP1-220ENST00000599716 GDE1Q9NZC3 331 aa9.46□□□□□ -0.9
SHKBP1-220ENST00000599716 LRWD1Q9UFC0 647 aa9.46□□□□□ -0.9
SHKBP1-220ENST00000599716 PCDHB6Q9Y5E3 794 aa9.46□□□□□ -0.9
SHKBP1-220ENST00000599716 PIAS3Q9Y6X2 628 aa9.46□□□□□ -0.9
SHKBP1-220ENST00000599716 ANK1P16157 1881 aa9.46□□□□□ -0.9
SHKBP1-220ENST00000599716 KIF26AQ9ULI4 1882 aaPredicted RBP9.46□□□□□ -0.9
SHKBP1-220ENST00000599716 ABCA12Q86UK0 2595 aa9.46□□□□□ -0.9
SHKBP1-220ENST00000599716 ATG2BQ96BY7 2078 aa9.46□□□□□ -0.9
SHKBP1-220ENST00000599716 NOTCH2Q04721 2471 aa9.45□□□□□ -0.9
SHKBP1-220ENST00000599716 A0A1W2PRU2 124 aa9.45□□□□□ -0.9
SHKBP1-220ENST00000599716 HEPACAM2A8MVW5 462 aa9.45□□□□□ -0.9
SHKBP1-220ENST00000599716 CHURC1-FNTBB4DL54 471 aa9.45□□□□□ -0.9
SHKBP1-220ENST00000599716 PPEF2O14830 753 aa9.45□□□□□ -0.9
SHKBP1-220ENST00000599716 TRAPPC3O43617 180 aa9.45□□□□□ -0.9
SHKBP1-220ENST00000599716 GDF9O60383 454 aa9.45□□□□□ -0.9
SHKBP1-220ENST00000599716 LRP3O75074 770 aa9.45□□□□□ -0.9
SHKBP1-220ENST00000599716 CXCL8P10145 99 aa9.45□□□□□ -0.9
SHKBP1-220ENST00000599716 CPB1P15086 417 aa9.45□□□□□ -0.9
SHKBP1-220ENST00000599716 CCNE1P24864 410 aa9.45□□□□□ -0.9
SHKBP1-220ENST00000599716 TNFSF9P41273 254 aa9.45□□□□□ -0.9
SHKBP1-220ENST00000599716 FNTBP49356 437 aa9.45□□□□□ -0.9
SHKBP1-220ENST00000599716 TOB1P50616 345 aaPredicted RBP9.45□□□□□ -0.9
SHKBP1-220ENST00000599716 EFNA5P52803 228 aa9.45□□□□□ -0.9
SHKBP1-220ENST00000599716 ANAPC15P60006 121 aa9.45□□□□□ -0.9
SHKBP1-220ENST00000599716 MRPL58Q14197 206 aaKnown RBP9.45□□□□□ -0.9
SHKBP1-220ENST00000599716 SAFBQ15424 915 aaKnown RBP eCLIP9.45□□□□□ -0.9
SHKBP1-220ENST00000599716 CCDC6Q16204 474 aa9.45□□□□□ -0.9
SHKBP1-220ENST00000599716 XKR4Q5GH76 650 aa9.45□□□□□ -0.9
SHKBP1-220ENST00000599716 TXNDC11Q6PKC3 985 aa9.45□□□□□ -0.9
SHKBP1-220ENST00000599716 MAP4K3Q8IVH8 894 aa9.45□□□□□ -0.9
SHKBP1-220ENST00000599716 TCEAL8Q8IYN2 117 aa9.45□□□□□ -0.9
SHKBP1-220ENST00000599716 FAM3CQ92520 227 aa9.45□□□□□ -0.9
SHKBP1-220ENST00000599716 DDX12PQ92771 950 aa9.45□□□□□ -0.9
SHKBP1-220ENST00000599716 KIFAP3Q92845 792 aa9.45□□□□□ -0.9
SHKBP1-220ENST00000599716 SMARCD2Q92925 531 aa9.45□□□□□ -0.9
SHKBP1-220ENST00000599716 KIF12Q96FN5 646 aa9.45□□□□□ -0.9
SHKBP1-220ENST00000599716 ACAP3Q96P50 834 aa9.45□□□□□ -0.9
SHKBP1-220ENST00000599716 LRRC3BQ96PB8 259 aa9.45□□□□□ -0.9
SHKBP1-220ENST00000599716 TMEM209Q96SK2 561 aa9.45□□□□□ -0.9
SHKBP1-220ENST00000599716 MRPL4Q9BYD3 311 aaKnown RBP9.45□□□□□ -0.9
SHKBP1-220ENST00000599716 CHRDQ9H2X0 955 aa9.45□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms