RNA–Protein interactions for RNA: ENST00000598570.5

USHBP1-209, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

TSL 3

Gene USHBP1, Length 588 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-209ENST00000598570 SIX4Q9UIU6 781 aa19.08■□□□□ 0.64
USHBP1-209ENST00000598570 FBXW11Q9UKB1 542 aa19.08■□□□□ 0.64
USHBP1-209ENST00000598570 PCDHA5Q9Y5H7 936 aa19.08■□□□□ 0.64
USHBP1-209ENST00000598570 PTPRJQ12913 1337 aa19.07■□□□□ 0.64
USHBP1-209ENST00000598570 RPL17P18621 184 aaKnown RBP19.07■□□□□ 0.64
USHBP1-209ENST00000598570 CYP24A1Q07973 514 aa19.07■□□□□ 0.64
USHBP1-209ENST00000598570 UVSSAQ2YD98 709 aa19.07■□□□□ 0.64
USHBP1-209ENST00000598570 CEP57Q86XR8 500 aa19.07■□□□□ 0.64
USHBP1-209ENST00000598570 WDR49Q8IV35 697 aa19.07■□□□□ 0.64
USHBP1-209ENST00000598570 LRRC52Q8N7C0 313 aa19.07■□□□□ 0.64
USHBP1-209ENST00000598570 ZNF461Q8TAF7 563 aa19.07■□□□□ 0.64
USHBP1-209ENST00000598570 CCDC47Q96A33 483 aaKnown RBP19.07■□□□□ 0.64
USHBP1-209ENST00000598570 FAM212AQ96EL1 285 aa19.07■□□□□ 0.64
USHBP1-209ENST00000598570 IPO9Q96P70 1041 aaKnown RBP19.07■□□□□ 0.64
USHBP1-209ENST00000598570 SFXN1Q9H9B4 322 aa19.07■□□□□ 0.64
USHBP1-209ENST00000598570 ZDHHC7Q9NXF8 308 aa19.07■□□□□ 0.64
USHBP1-209ENST00000598570 GDAP2Q9NXN4 497 aa19.07■□□□□ 0.64
USHBP1-209ENST00000598570 ITGA11Q9UKX5 1188 aa19.07■□□□□ 0.64
USHBP1-209ENST00000598570 NUB1Q9Y5A7 615 aa19.07■□□□□ 0.64
USHBP1-209ENST00000598570 LOC730098B7Z3J9 87 aa19.06■□□□□ 0.64
USHBP1-209ENST00000598570 H7C4K7 107 aa19.06■□□□□ 0.64
USHBP1-209ENST00000598570 CLIC2O15247 247 aa19.06■□□□□ 0.64
USHBP1-209ENST00000598570 HOXA9P31269 272 aa19.06■□□□□ 0.64
USHBP1-209ENST00000598570 PNPLA4P41247 253 aa19.06■□□□□ 0.64
USHBP1-209ENST00000598570 ZNF658Q5TYW1 1059 aaPredicted RBP19.06■□□□□ 0.64
USHBP1-209ENST00000598570 SCARA3Q6AZY7 606 aa19.06■□□□□ 0.64
USHBP1-209ENST00000598570 CENPPQ6IPU0 288 aa19.06■□□□□ 0.64
USHBP1-209ENST00000598570 ZNF707Q96C28 371 aaPredicted RBP19.06■□□□□ 0.64
USHBP1-209ENST00000598570 SENP8Q96LD8 212 aa19.06■□□□□ 0.64
USHBP1-209ENST00000598570 NECTIN4Q96NY8 510 aa19.06■□□□□ 0.64
USHBP1-209ENST00000598570 UHRF1Q96T88 793 aaPredicted RBP19.06■□□□□ 0.64
USHBP1-209ENST00000598570 CD320Q9NPF0 282 aa19.06■□□□□ 0.64
USHBP1-209ENST00000598570 RMND1Q9NWS8 449 aa19.06■□□□□ 0.64
USHBP1-209ENST00000598570 FBXL5Q9UKA1 691 aa19.06■□□□□ 0.64
USHBP1-209ENST00000598570 PRPF40AO75400 957 aaKnown RBP19.05■□□□□ 0.64
USHBP1-209ENST00000598570 ZMYND10O75800 440 aa19.05■□□□□ 0.64
USHBP1-209ENST00000598570 SMC2O95347 1197 aa19.05■□□□□ 0.64
USHBP1-209ENST00000598570 MCM4P33991 863 aa19.05■□□□□ 0.64
USHBP1-209ENST00000598570 OR1D2P34982 312 aa19.05■□□□□ 0.64
USHBP1-209ENST00000598570 MTHFRP42898 656 aa19.05■□□□□ 0.64
USHBP1-209ENST00000598570 CLUL1Q15846 466 aa19.05■□□□□ 0.64
USHBP1-209ENST00000598570 DUOXA2Q1HG44 320 aa19.05■□□□□ 0.64
USHBP1-209ENST00000598570 EDRF1Q3B7T1 1238 aa19.05■□□□□ 0.64
USHBP1-209ENST00000598570 TPGS2Q68CL5 300 aa19.05■□□□□ 0.64
USHBP1-209ENST00000598570 FOXR2Q6PJQ5 311 aa19.05■□□□□ 0.64
USHBP1-209ENST00000598570 EP400NLQ6ZTU2 488 aa19.05■□□□□ 0.64
USHBP1-209ENST00000598570 PALB2Q86YC2 1186 aa19.05■□□□□ 0.64
USHBP1-209ENST00000598570 ZC3H3Q8IXZ2 948 aaKnown RBP19.05■□□□□ 0.64
USHBP1-209ENST00000598570 KREMEN2Q8NCW0 462 aa19.05■□□□□ 0.64
USHBP1-209ENST00000598570 OR5B17Q8NGF7 314 aa19.05■□□□□ 0.64
USHBP1-209ENST00000598570 PLEKHO2Q8TD55 490 aa19.05■□□□□ 0.64
USHBP1-209ENST00000598570 PARD3BQ8TEW8 1205 aa19.05■□□□□ 0.64
USHBP1-209ENST00000598570 ZNF516Q92618 1163 aa19.05■□□□□ 0.64
USHBP1-209ENST00000598570 PHF7Q9BWX1 381 aaPredicted RBP19.05■□□□□ 0.64
USHBP1-209ENST00000598570 MAN1C1Q9NR34 630 aa19.05■□□□□ 0.64
USHBP1-209ENST00000598570 HOOK1Q9UJC3 728 aaKnown RBP19.05■□□□□ 0.64
USHBP1-209ENST00000598570 DENND4AQ7Z401 1863 aa19.05■□□□□ 0.64
USHBP1-209ENST00000598570 NR3C1P04150 777 aa19.04■□□□□ 0.64
USHBP1-209ENST00000598570 HNRNPA1P09651 372 aaKnown RBP eCLIP19.04■□□□□ 0.64
USHBP1-209ENST00000598570 FAM163BP0C2L3 166 aa19.04■□□□□ 0.64
USHBP1-209ENST00000598570 ATF2P15336 505 aa19.04■□□□□ 0.64
USHBP1-209ENST00000598570 TAF6P49848 677 aa19.04■□□□□ 0.64
USHBP1-209ENST00000598570 ELMSAN1Q6PJG2 1045 aa19.04■□□□□ 0.64
USHBP1-209ENST00000598570 TCEAL8Q8IYN2 117 aa19.04■□□□□ 0.64
USHBP1-209ENST00000598570 C12orf76Q8N812 135 aaPredicted RBP19.04■□□□□ 0.64
USHBP1-209ENST00000598570 FEZF2Q8TBJ5 459 aa19.04■□□□□ 0.64
USHBP1-209ENST00000598570 SPATA18Q8TC71 538 aa19.04■□□□□ 0.64
USHBP1-209ENST00000598570 TMC2Q8TDI7 906 aa19.04■□□□□ 0.64
USHBP1-209ENST00000598570 NECAB3Q96P71 396 aaPredicted RBP19.04■□□□□ 0.64
USHBP1-209ENST00000598570 TSHZ2Q9NRE2 1034 aa19.04■□□□□ 0.64
USHBP1-209ENST00000598570 CDY1Q9Y6F8 540 aa19.04■□□□□ 0.64
USHBP1-209ENST00000598570 C2orf16Q68DN1 1984 aa19.04■□□□□ 0.64
USHBP1-209ENST00000598570 TSC2P49815 1807 aa19.04■□□□□ 0.64
USHBP1-209ENST00000598570 TRIOO75962 3097 aa19.03■□□□□ 0.64
USHBP1-209ENST00000598570 ARHGEF37A1IGU5 675 aa19.03■□□□□ 0.64
USHBP1-209ENST00000598570 OR6C75A6NL08 312 aa19.03■□□□□ 0.64
USHBP1-209ENST00000598570 KPNA7A9QM74 516 aa19.03■□□□□ 0.64
USHBP1-209ENST00000598570 DLL1O00548 723 aa19.03■□□□□ 0.64
USHBP1-209ENST00000598570 STAU1O95793 577 aaKnown RBP19.03■□□□□ 0.64
USHBP1-209ENST00000598570 BMP6P22004 513 aa19.03■□□□□ 0.64
USHBP1-209ENST00000598570 PRCPP42785 496 aa19.03■□□□□ 0.64
USHBP1-209ENST00000598570 CYP2J2P51589 502 aa19.03■□□□□ 0.64
USHBP1-209ENST00000598570 RBP5P82980 135 aa19.03■□□□□ 0.64
USHBP1-209ENST00000598570 TFAMQ00059 246 aaKnown RBP19.03■□□□□ 0.64
USHBP1-209ENST00000598570 ATAT1Q5SQI0 421 aa19.03■□□□□ 0.64
USHBP1-209ENST00000598570 CES5AQ6NT32 575 aa19.03■□□□□ 0.64
USHBP1-209ENST00000598570 ADSSL1Q8N142 457 aa19.03■□□□□ 0.64
USHBP1-209ENST00000598570 POP1Q99575 1024 aaKnown RBP19.03■□□□□ 0.64
USHBP1-209ENST00000598570 CGRRF1Q99675 332 aa19.03■□□□□ 0.64
USHBP1-209ENST00000598570 RTP3Q9BQQ7 232 aa19.03■□□□□ 0.64
USHBP1-209ENST00000598570 PRKD2Q9BZL6 878 aa19.03■□□□□ 0.64
USHBP1-209ENST00000598570 DSEQ9UL01 958 aa19.03■□□□□ 0.64
USHBP1-209ENST00000598570 NOTCH4Q99466 2003 aa19.02■□□□□ 0.64
USHBP1-209ENST00000598570 IKBKBO14920 756 aa19.02■□□□□ 0.64
USHBP1-209ENST00000598570 CALUO43852 315 aaPredicted RBP19.02■□□□□ 0.64
USHBP1-209ENST00000598570 EXOC3O60645 756 aa19.02■□□□□ 0.64
USHBP1-209ENST00000598570 KINO60870 393 aaKnown RBP19.02■□□□□ 0.64
USHBP1-209ENST00000598570 CA8P35219 290 aa19.02■□□□□ 0.64
USHBP1-209ENST00000598570 AP3M2P53677 418 aa19.02■□□□□ 0.64
USHBP1-209ENST00000598570 ROR1Q01973 937 aa19.02■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms