RNA–Protein interactions for RNA: ENST00000597968.1

TRIM28-211, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 504 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-211ENST00000597968 SLFN12LQ6IEE8 588 aa14.8□□□□□ -0.04
TRIM28-211ENST00000597968 GPBP1Q86WP2 473 aa14.8□□□□□ -0.04
TRIM28-211ENST00000597968 MAP4K3Q8IVH8 894 aa14.8□□□□□ -0.04
TRIM28-211ENST00000597968 MYCT1Q8N699 235 aa14.8□□□□□ -0.04
TRIM28-211ENST00000597968 SMARCD2Q92925 531 aa14.8□□□□□ -0.04
TRIM28-211ENST00000597968 MCRS1Q96EZ8 462 aa14.8□□□□□ -0.04
TRIM28-211ENST00000597968 KXD1Q9BQD3 176 aa14.8□□□□□ -0.04
TRIM28-211ENST00000597968 TRMT61BQ9BVS5 477 aaKnown RBP14.8□□□□□ -0.04
TRIM28-211ENST00000597968 FOXQ1Q9C009 403 aa14.8□□□□□ -0.04
TRIM28-211ENST00000597968 CCSER1Q9C0I3 900 aa14.8□□□□□ -0.04
TRIM28-211ENST00000597968 ASAH2Q9NR71 780 aa14.8□□□□□ -0.04
TRIM28-211ENST00000597968 TUBGCP4Q9UGJ1 667 aa14.8□□□□□ -0.04
TRIM28-211ENST00000597968 PCDHGA2Q9Y5H1 932 aa14.8□□□□□ -0.04
TRIM28-211ENST00000597968 FAM170BA6NMN3 283 aa14.79□□□□□ -0.04
TRIM28-211ENST00000597968 SEC24AO95486 1093 aa14.79□□□□□ -0.04
TRIM28-211ENST00000597968 CEBPBP17676 345 aa14.79□□□□□ -0.04
TRIM28-211ENST00000597968 PSMC3P17980 439 aa14.79□□□□□ -0.04
TRIM28-211ENST00000597968 DDIT3P35638 169 aa14.79□□□□□ -0.04
TRIM28-211ENST00000597968 ARPP19P56211 112 aa14.79□□□□□ -0.04
TRIM28-211ENST00000597968 SMARCB1Q12824 385 aa14.79□□□□□ -0.04
TRIM28-211ENST00000597968 NT5DC4Q86YG4 428 aa14.79□□□□□ -0.04
TRIM28-211ENST00000597968 LARP4BQ92615 738 aaKnown RBP14.79□□□□□ -0.04
TRIM28-211ENST00000597968 RAD54LQ92698 747 aa14.79□□□□□ -0.04
TRIM28-211ENST00000597968 HVCN1Q96D96 273 aa14.79□□□□□ -0.04
TRIM28-211ENST00000597968 HAPLN2Q9GZV7 340 aa14.79□□□□□ -0.04
TRIM28-211ENST00000597968 BLOC1S4Q9NUP1 217 aa14.79□□□□□ -0.04
TRIM28-211ENST00000597968 ZMYM5Q9UJ78 669 aa14.79□□□□□ -0.04
TRIM28-211ENST00000597968 CPSF3Q9UKF6 684 aaKnown RBP14.79□□□□□ -0.04
TRIM28-211ENST00000597968 DSEQ9UL01 958 aa14.79□□□□□ -0.04
TRIM28-211ENST00000597968 C2CD2Q9Y426 696 aa14.79□□□□□ -0.04
TRIM28-211ENST00000597968 MORC2Q9Y6X9 1032 aaPredicted RBP14.79□□□□□ -0.04
TRIM28-211ENST00000597968 TRIP11Q15643 1979 aa14.78□□□□□ -0.04
TRIM28-211ENST00000597968 MYH15Q9Y2K3 1946 aa14.78□□□□□ -0.04
TRIM28-211ENST00000597968 LACTBL1A8MY62 500 aa14.78□□□□□ -0.04
TRIM28-211ENST00000597968 K7ENM7 598 aa14.78□□□□□ -0.04
TRIM28-211ENST00000597968 KINO60870 393 aaKnown RBP14.78□□□□□ -0.04
TRIM28-211ENST00000597968 TBCAO75347 108 aaKnown RBP14.78□□□□□ -0.04
TRIM28-211ENST00000597968 KRT18P05783 430 aaKnown RBP14.78□□□□□ -0.04
TRIM28-211ENST00000597968 ODC1P11926 461 aa14.78□□□□□ -0.04
TRIM28-211ENST00000597968 FCARP24071 287 aa14.78□□□□□ -0.04
TRIM28-211ENST00000597968 EPHB3P54753 998 aa14.78□□□□□ -0.04
TRIM28-211ENST00000597968 TWF1Q12792 350 aa14.78□□□□□ -0.04
TRIM28-211ENST00000597968 PPP2R5DQ14738 602 aa14.78□□□□□ -0.04
TRIM28-211ENST00000597968 UBXN2BQ14CS0 331 aa14.78□□□□□ -0.04
TRIM28-211ENST00000597968 ENOX2Q16206 610 aaKnown RBP14.78□□□□□ -0.04
TRIM28-211ENST00000597968 TANGO2Q6ICL3 276 aa14.78□□□□□ -0.04
TRIM28-211ENST00000597968 DSTYKQ6XUX3 929 aa14.78□□□□□ -0.04
TRIM28-211ENST00000597968 GPR161Q8N6U8 529 aaKnown RBP14.78□□□□□ -0.04
TRIM28-211ENST00000597968 KRI1Q8N9T8 703 aaKnown RBP14.78□□□□□ -0.04
TRIM28-211ENST00000597968 RASSF8Q8NHQ8 419 aa14.78□□□□□ -0.04
TRIM28-211ENST00000597968 KCNG4Q8TDN1 519 aa14.78□□□□□ -0.04
TRIM28-211ENST00000597968 ING5Q8WYH8 240 aa14.78□□□□□ -0.04
TRIM28-211ENST00000597968 RUBCNQ92622 972 aa14.78□□□□□ -0.04
TRIM28-211ENST00000597968 PLIN2Q99541 437 aa14.78□□□□□ -0.04
TRIM28-211ENST00000597968 MSTO1Q9BUK6 570 aa14.78□□□□□ -0.04
TRIM28-211ENST00000597968 BRD9Q9H8M2 597 aa14.78□□□□□ -0.04
TRIM28-211ENST00000597968 SEL1LQ9UBV2 794 aa14.78□□□□□ -0.04
TRIM28-211ENST00000597968 STK17AQ9UEE5 414 aa14.78□□□□□ -0.04
TRIM28-211ENST00000597968 STYXL1Q9Y6J8 313 aa14.78□□□□□ -0.04
TRIM28-211ENST00000597968 DCHS1Q96JQ0 3298 aa14.78□□□□□ -0.04
TRIM28-211ENST00000597968 NOTCH4Q99466 2003 aa14.78□□□□□ -0.04
TRIM28-211ENST00000597968 CYP11A1P05108 521 aa14.77□□□□□ -0.05
TRIM28-211ENST00000597968 WEE1P30291 646 aa14.77□□□□□ -0.05
TRIM28-211ENST00000597968 ALDH1A3P47895 512 aa14.77□□□□□ -0.05
TRIM28-211ENST00000597968 LILRA4P59901 499 aa14.77□□□□□ -0.05
TRIM28-211ENST00000597968 POSTNQ15063 836 aa14.77□□□□□ -0.05
TRIM28-211ENST00000597968 SEZ6Q53EL9 994 aa14.77□□□□□ -0.05
TRIM28-211ENST00000597968 FAM78AQ5JUQ0 283 aa14.77□□□□□ -0.05
TRIM28-211ENST00000597968 OVOS1Q6IE37 1185 aa14.77□□□□□ -0.05
TRIM28-211ENST00000597968 ARMCX5Q6P1M9 558 aa14.77□□□□□ -0.05
TRIM28-211ENST00000597968 RNF19BQ6ZMZ0 732 aa14.77□□□□□ -0.05
TRIM28-211ENST00000597968 TPRG1Q6ZUI0 275 aa14.77□□□□□ -0.05
TRIM28-211ENST00000597968 ITIH5Q86UX2 942 aa14.77□□□□□ -0.05
TRIM28-211ENST00000597968 MFSD6LQ8IWD5 586 aa14.77□□□□□ -0.05
TRIM28-211ENST00000597968 MAML2Q8IZL2 1156 aaPredicted RBP14.77□□□□□ -0.05
TRIM28-211ENST00000597968 C2orf15Q8WU43 125 aaKnown RBP14.77□□□□□ -0.05
TRIM28-211ENST00000597968 NELL1Q92832 810 aa14.77□□□□□ -0.05
TRIM28-211ENST00000597968 FIZ1Q96SL8 496 aa14.77□□□□□ -0.05
TRIM28-211ENST00000597968 SPATA6Q9NWH7 488 aaPredicted RBP14.77□□□□□ -0.05
TRIM28-211ENST00000597968 CEP72Q9P209 647 aa14.77□□□□□ -0.05
TRIM28-211ENST00000597968 CCDC39Q9UFE4 941 aa14.77□□□□□ -0.05
TRIM28-211ENST00000597968 YIPF1Q9Y548 306 aa14.77□□□□□ -0.05
TRIM28-211ENST00000597968 PTPRZ1P23471 2315 aaPredicted RBP14.77□□□□□ -0.05
TRIM28-211ENST00000597968 PDCD11Q14690 1871 aaKnown RBP14.76□□□□□ -0.05
TRIM28-211ENST00000597968 NPHP3-ACAD11A0A0J9YXS1 232 aa14.76□□□□□ -0.05
TRIM28-211ENST00000597968 ANO9A1A5B4 782 aa14.76□□□□□ -0.05
TRIM28-211ENST00000597968 PIRO00625 290 aa14.76□□□□□ -0.05
TRIM28-211ENST00000597968 PLCG1P19174 1290 aa14.76□□□□□ -0.05
TRIM28-211ENST00000597968 TNFSF9P41273 254 aa14.76□□□□□ -0.05
TRIM28-211ENST00000597968 CCR2P41597 374 aa14.76□□□□□ -0.05
TRIM28-211ENST00000597968 ID4P47928 161 aa14.76□□□□□ -0.05
TRIM28-211ENST00000597968 TUFMP49411 452 aaKnown RBP14.76□□□□□ -0.05
TRIM28-211ENST00000597968 NRLP54845 237 aa14.76□□□□□ -0.05
TRIM28-211ENST00000597968 CUL4AQ13619 759 aa14.76□□□□□ -0.05
TRIM28-211ENST00000597968 SF3A1Q15459 793 aaKnown RBP14.76□□□□□ -0.05
TRIM28-211ENST00000597968 CENPPQ6IPU0 288 aa14.76□□□□□ -0.05
TRIM28-211ENST00000597968 ZBTB44Q8NCP5 570 aa14.76□□□□□ -0.05
TRIM28-211ENST00000597968 PSMG2Q969U7 264 aa14.76□□□□□ -0.05
TRIM28-211ENST00000597968 TCEAL4Q96EI5 215 aa14.76□□□□□ -0.05
TRIM28-211ENST00000597968 PLA2G2FQ9BZM2 168 aa14.76□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms