RNA–Protein interactions for RNA: ENST00000596457.1

LIG1-211, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 792 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-211ENST00000596457 SLC22A17Q8WUG5 538 aa11.97□□□□□ -0.49
LIG1-211ENST00000596457 PIK3R5Q8WYR1 880 aa11.97□□□□□ -0.49
LIG1-211ENST00000596457 SUSD3Q96L08 255 aa11.97□□□□□ -0.49
LIG1-211ENST00000596457 SENP8Q96LD8 212 aa11.97□□□□□ -0.49
LIG1-211ENST00000596457 FBXL18Q96ME1 805 aa11.97□□□□□ -0.49
LIG1-211ENST00000596457 CGRRF1Q99675 332 aa11.97□□□□□ -0.49
LIG1-211ENST00000596457 TSG101Q99816 390 aa11.97□□□□□ -0.49
LIG1-211ENST00000596457 CLSTN3Q9BQT9 956 aa11.97□□□□□ -0.49
LIG1-211ENST00000596457 RXFP1Q9HBX9 757 aa11.97□□□□□ -0.49
LIG1-211ENST00000596457 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP11.97□□□□□ -0.49
LIG1-211ENST00000596457 INTS13Q9NVM9 706 aa11.97□□□□□ -0.49
LIG1-211ENST00000596457 DMAC2Q9NW81 257 aa11.97□□□□□ -0.49
LIG1-211ENST00000596457 CLEC1BQ9P126 229 aa11.97□□□□□ -0.49
LIG1-211ENST00000596457 PRKAG3Q9UGI9 489 aa11.97□□□□□ -0.49
LIG1-211ENST00000596457 PCDHB8Q9UN66 801 aa11.97□□□□□ -0.49
LIG1-211ENST00000596457 TRAF3IP3Q9Y228 551 aa11.97□□□□□ -0.49
LIG1-211ENST00000596457 GTF3C5Q9Y5Q8 519 aaPredicted RBP11.97□□□□□ -0.49
LIG1-211ENST00000596457 SCN1AP35498 2009 aa11.97□□□□□ -0.49
LIG1-211ENST00000596457 MTCL1Q9Y4B5 1905 aaKnown RBP11.96□□□□□ -0.49
LIG1-211ENST00000596457 PTPRJQ12913 1337 aa11.96□□□□□ -0.49
LIG1-211ENST00000596457 ANO9A1A5B4 782 aa11.96□□□□□ -0.49
LIG1-211ENST00000596457 TRIM49BA6NDI0 452 aa11.96□□□□□ -0.49
LIG1-211ENST00000596457 FAM86C2PA6NEL3 165 aa11.96□□□□□ -0.49
LIG1-211ENST00000596457 H7C4K7 107 aa11.96□□□□□ -0.49
LIG1-211ENST00000596457 CYB561D2O14569 222 aa11.96□□□□□ -0.49
LIG1-211ENST00000596457 SPTLC1O15269 473 aa11.96□□□□□ -0.49
LIG1-211ENST00000596457 ADAM12O43184 909 aa11.96□□□□□ -0.49
LIG1-211ENST00000596457 PHACTR2O75167 634 aa11.96□□□□□ -0.49
LIG1-211ENST00000596457 GLUD1P00367 558 aa11.96□□□□□ -0.49
LIG1-211ENST00000596457 RPL13P26373 211 aaKnown RBP11.96□□□□□ -0.49
LIG1-211ENST00000596457 CLCN4P51793 760 aa11.96□□□□□ -0.49
LIG1-211ENST00000596457 LILRA4P59901 499 aa11.96□□□□□ -0.49
LIG1-211ENST00000596457 PSMD6Q15008 389 aa11.96□□□□□ -0.49
LIG1-211ENST00000596457 DUOXA2Q1HG44 320 aa11.96□□□□□ -0.49
LIG1-211ENST00000596457 SV2CQ496J9 727 aa11.96□□□□□ -0.49
LIG1-211ENST00000596457 CTXN3Q4LDR2 81 aa11.96□□□□□ -0.49
LIG1-211ENST00000596457 VARS2Q5ST30 1063 aaKnown RBP11.96□□□□□ -0.49
LIG1-211ENST00000596457 PDXDC1Q6P996 788 aa11.96□□□□□ -0.49
LIG1-211ENST00000596457 ANKS3Q6ZW76 656 aa11.96□□□□□ -0.49
LIG1-211ENST00000596457 WDR49Q8IV35 697 aa11.96□□□□□ -0.49
LIG1-211ENST00000596457 C1orf127Q8N9H9 656 aa11.96□□□□□ -0.49
LIG1-211ENST00000596457 APPL2Q8NEU8 664 aa11.96□□□□□ -0.49
LIG1-211ENST00000596457 SPATA20Q8TB22 786 aa11.96□□□□□ -0.49
LIG1-211ENST00000596457 EEF2KMTQ96G04 330 aa11.96□□□□□ -0.49
LIG1-211ENST00000596457 MFSD14AQ96MC6 490 aa11.96□□□□□ -0.49
LIG1-211ENST00000596457 ZNF560Q96MR9 790 aa11.96□□□□□ -0.49
LIG1-211ENST00000596457 CLSTN2Q9H4D0 955 aa11.96□□□□□ -0.49
LIG1-211ENST00000596457 MMRN2Q9H8L6 949 aa11.96□□□□□ -0.49
LIG1-211ENST00000596457 MAN1C1Q9NR34 630 aa11.96□□□□□ -0.49
LIG1-211ENST00000596457 FNIP2Q9P278 1114 aa11.96□□□□□ -0.49
LIG1-211ENST00000596457 CDY1Q9Y6F8 540 aa11.96□□□□□ -0.49
LIG1-211ENST00000596457 SYN3O14994 580 aa11.95□□□□□ -0.5
LIG1-211ENST00000596457 MBTPS2O43462 519 aa11.95□□□□□ -0.5
LIG1-211ENST00000596457 TGM5O43548 720 aa11.95□□□□□ -0.5
LIG1-211ENST00000596457 WEE2P0C1S8 567 aa11.95□□□□□ -0.5
LIG1-211ENST00000596457 ODC1P11926 461 aa11.95□□□□□ -0.5
LIG1-211ENST00000596457 KRT13P13646 458 aa11.95□□□□□ -0.5
LIG1-211ENST00000596457 IL9P15248 144 aa11.95□□□□□ -0.5
LIG1-211ENST00000596457 CD44P16070 742 aaKnown RBP11.95□□□□□ -0.5
LIG1-211ENST00000596457 STX17P56962 302 aa11.95□□□□□ -0.5
LIG1-211ENST00000596457 RBP5P82980 135 aa11.95□□□□□ -0.5
LIG1-211ENST00000596457 BIRC3Q13489 604 aa11.95□□□□□ -0.5
LIG1-211ENST00000596457 KCNC3Q14003 757 aa11.95□□□□□ -0.5
LIG1-211ENST00000596457 MORC3Q14149 939 aa11.95□□□□□ -0.5
LIG1-211ENST00000596457 ANKRD40Q6AI12 368 aa11.95□□□□□ -0.5
LIG1-211ENST00000596457 RSPO2Q6UXX9 243 aaPredicted RBP11.95□□□□□ -0.5
LIG1-211ENST00000596457 METTL23Q86XA0 190 aa11.95□□□□□ -0.5
LIG1-211ENST00000596457 SLC9A9Q8IVB4 645 aa11.95□□□□□ -0.5
LIG1-211ENST00000596457 FAM186BQ8IYM0 893 aa11.95□□□□□ -0.5
LIG1-211ENST00000596457 ADSSL1Q8N142 457 aa11.95□□□□□ -0.5
LIG1-211ENST00000596457 PLEKHO2Q8TD55 490 aa11.95□□□□□ -0.5
LIG1-211ENST00000596457 ZNF516Q92618 1163 aa11.95□□□□□ -0.5
LIG1-211ENST00000596457 MSLNLQ96KJ4 702 aa11.95□□□□□ -0.5
LIG1-211ENST00000596457 GTPBP4Q9BZE4 634 aaKnown RBP11.95□□□□□ -0.5
LIG1-211ENST00000596457 NUP62CLQ9H1M0 184 aa11.95□□□□□ -0.5
LIG1-211ENST00000596457 KIAA1468Q9P260 1216 aa11.95□□□□□ -0.5
LIG1-211ENST00000596457 MTRRQ9UBK8 725 aa11.95□□□□□ -0.5
LIG1-211ENST00000596457 ITGA11Q9UKX5 1188 aa11.95□□□□□ -0.5
LIG1-211ENST00000596457 CTNND2Q9UQB3 1225 aa11.95□□□□□ -0.5
LIG1-211ENST00000596457 BRWD1Q9NSI6 2320 aa11.95□□□□□ -0.5
LIG1-211ENST00000596457 LRRIQ3A6PVS8 624 aaPredicted RBP11.94□□□□□ -0.5
LIG1-211ENST00000596457 KPNA7A9QM74 516 aa11.94□□□□□ -0.5
LIG1-211ENST00000596457 M0QZQ0 153 aa11.94□□□□□ -0.5
LIG1-211ENST00000596457 PSMA7O14818 248 aa11.94□□□□□ -0.5
LIG1-211ENST00000596457 CETN3O15182 167 aa11.94□□□□□ -0.5
LIG1-211ENST00000596457 AKAP3O75969 853 aa11.94□□□□□ -0.5
LIG1-211ENST00000596457 CCNE1P24864 410 aa11.94□□□□□ -0.5
LIG1-211ENST00000596457 PSMC2P35998 433 aaKnown RBP11.94□□□□□ -0.5
LIG1-211ENST00000596457 CDR1P51861 262 aa11.94□□□□□ -0.5
LIG1-211ENST00000596457 PMS1P54277 932 aaKnown RBP11.94□□□□□ -0.5
LIG1-211ENST00000596457 DLG4P78352 724 aa11.94□□□□□ -0.5
LIG1-211ENST00000596457 YWHAHQ04917 246 aaPredicted RBP11.94□□□□□ -0.5
LIG1-211ENST00000596457 MYO1EQ12965 1108 aa11.94□□□□□ -0.5
LIG1-211ENST00000596457 TRPC3Q13507 836 aa11.94□□□□□ -0.5
LIG1-211ENST00000596457 MYBPC2Q14324 1141 aa11.94□□□□□ -0.5
LIG1-211ENST00000596457 OVOS1Q6IE37 1185 aa11.94□□□□□ -0.5
LIG1-211ENST00000596457 ZNF280DQ6N043 979 aa11.94□□□□□ -0.5
LIG1-211ENST00000596457 SYCE2Q6PIF2 218 aa11.94□□□□□ -0.5
LIG1-211ENST00000596457 TMC5Q6UXY8 1006 aa11.94□□□□□ -0.5
LIG1-211ENST00000596457 TMEM184AQ6ZMB5 413 aa11.94□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms