RNA–Protein interactions for RNA: ENST00000590630.5

LIG3-213, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 904 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-213ENST00000590630 SYCE2Q6PIF2 218 aa12.85□□□□□ -0.35
LIG3-213ENST00000590630 DSTYKQ6XUX3 929 aa12.85□□□□□ -0.35
LIG3-213ENST00000590630 SMYD4Q8IYR2 804 aaPredicted RBP12.85□□□□□ -0.35
LIG3-213ENST00000590630 LRRC52Q8N7C0 313 aa12.85□□□□□ -0.35
LIG3-213ENST00000590630 C1orf127Q8N9H9 656 aa12.85□□□□□ -0.35
LIG3-213ENST00000590630 ADAMTS19Q8TE59 1207 aa12.85□□□□□ -0.35
LIG3-213ENST00000590630 ERCC4Q92889 916 aaPredicted RBP12.85□□□□□ -0.35
LIG3-213ENST00000590630 ANKRD36BP1Q96IX9 119 aa12.85□□□□□ -0.35
LIG3-213ENST00000590630 MFSD14AQ96MC6 490 aa12.85□□□□□ -0.35
LIG3-213ENST00000590630 OXCT2Q9BYC2 517 aaPredicted RBP12.85□□□□□ -0.35
LIG3-213ENST00000590630 MTMR12Q9C0I1 747 aa12.85□□□□□ -0.35
LIG3-213ENST00000590630 PLEKHA4Q9H4M7 779 aa12.85□□□□□ -0.35
LIG3-213ENST00000590630 SFXN1Q9H9B4 322 aa12.85□□□□□ -0.35
LIG3-213ENST00000590630 MAN1C1Q9NR34 630 aa12.85□□□□□ -0.35
LIG3-213ENST00000590630 INTS13Q9NVM9 706 aa12.85□□□□□ -0.35
LIG3-213ENST00000590630 FRMD4BQ9Y2L6 1034 aa12.85□□□□□ -0.35
LIG3-213ENST00000590630 TRIOO75962 3097 aa12.85□□□□□ -0.35
LIG3-213ENST00000590630 SPDYE4A6NLX3 237 aa12.84□□□□□ -0.35
LIG3-213ENST00000590630 MAPK13O15264 365 aa12.84□□□□□ -0.35
LIG3-213ENST00000590630 OAZ2O95190 189 aa12.84□□□□□ -0.35
LIG3-213ENST00000590630 ITGB3P05106 788 aa12.84□□□□□ -0.35
LIG3-213ENST00000590630 DLATP10515 647 aaKnown RBP12.84□□□□□ -0.35
LIG3-213ENST00000590630 ODC1P11926 461 aa12.84□□□□□ -0.35
LIG3-213ENST00000590630 TNNI1P19237 187 aa12.84□□□□□ -0.35
LIG3-213ENST00000590630 TYMPP19971 482 aa12.84□□□□□ -0.35
LIG3-213ENST00000590630 NR2F2P24468 414 aa12.84□□□□□ -0.35
LIG3-213ENST00000590630 OR1D2P34982 312 aa12.84□□□□□ -0.35
LIG3-213ENST00000590630 PPP1R2P41236 205 aa12.84□□□□□ -0.35
LIG3-213ENST00000590630 PRCPP42785 496 aa12.84□□□□□ -0.35
LIG3-213ENST00000590630 RBP5P82980 135 aa12.84□□□□□ -0.35
LIG3-213ENST00000590630 YWHAHQ04917 246 aaPredicted RBP12.84□□□□□ -0.35
LIG3-213ENST00000590630 STIM1Q13586 685 aa12.84□□□□□ -0.35
LIG3-213ENST00000590630 RAB33AQ14088 237 aa12.84□□□□□ -0.35
LIG3-213ENST00000590630 EDRF1Q3B7T1 1238 aa12.84□□□□□ -0.35
LIG3-213ENST00000590630 ZCWPW2Q504Y3 356 aa12.84□□□□□ -0.35
LIG3-213ENST00000590630 SLC8B1Q6J4K2 584 aa12.84□□□□□ -0.35
LIG3-213ENST00000590630 ZNF280DQ6N043 979 aa12.84□□□□□ -0.35
LIG3-213ENST00000590630 CES5AQ6NT32 575 aa12.84□□□□□ -0.35
LIG3-213ENST00000590630 LILRA6Q6PI73 481 aa12.84□□□□□ -0.35
LIG3-213ENST00000590630 USP37Q86T82 979 aa12.84□□□□□ -0.35
LIG3-213ENST00000590630 PALB2Q86YC2 1186 aa12.84□□□□□ -0.35
LIG3-213ENST00000590630 GLYCTKQ8IVS8 523 aa12.84□□□□□ -0.35
LIG3-213ENST00000590630 CSGALNACT2Q8N6G5 542 aa12.84□□□□□ -0.35
LIG3-213ENST00000590630 CXorf38Q8TB03 319 aa12.84□□□□□ -0.35
LIG3-213ENST00000590630 CCDC127Q96BQ5 260 aa12.84□□□□□ -0.35
LIG3-213ENST00000590630 SENP8Q96LD8 212 aa12.84□□□□□ -0.35
LIG3-213ENST00000590630 CGRRF1Q99675 332 aa12.84□□□□□ -0.35
LIG3-213ENST00000590630 S1PR5Q9H228 398 aa12.84□□□□□ -0.35
LIG3-213ENST00000590630 ADAM7Q9H2U9 754 aa12.84□□□□□ -0.35
LIG3-213ENST00000590630 DSEQ9UL01 958 aa12.84□□□□□ -0.35
LIG3-213ENST00000590630 R3HCC1Q9Y3T6 440 aaKnown RBP12.84□□□□□ -0.35
LIG3-213ENST00000590630 USP15Q9Y4E8 981 aaPredicted RBP12.84□□□□□ -0.35
LIG3-213ENST00000590630 CDY1Q9Y6F8 540 aa12.84□□□□□ -0.35
LIG3-213ENST00000590630 PTPRJQ12913 1337 aa12.84□□□□□ -0.35
LIG3-213ENST00000590630 DENND4AQ7Z401 1863 aa12.83□□□□□ -0.36
LIG3-213ENST00000590630 KPNA7A9QM74 516 aa12.83□□□□□ -0.36
LIG3-213ENST00000590630 GOLGA6L22H0YM25 854 aa12.83□□□□□ -0.36
LIG3-213ENST00000590630 SPTLC1O15269 473 aa12.83□□□□□ -0.36
LIG3-213ENST00000590630 TBC1D4O60343 1298 aa12.83□□□□□ -0.36
LIG3-213ENST00000590630 CYP11A1P05108 521 aa12.83□□□□□ -0.36
LIG3-213ENST00000590630 IL9P15248 144 aa12.83□□□□□ -0.36
LIG3-213ENST00000590630 POLR2BP30876 1174 aaKnown RBP12.83□□□□□ -0.36
LIG3-213ENST00000590630 CLDN10P78369 228 aa12.83□□□□□ -0.36
LIG3-213ENST00000590630 CBX2Q14781 532 aaPredicted RBP12.83□□□□□ -0.36
LIG3-213ENST00000590630 CTXN3Q4LDR2 81 aa12.83□□□□□ -0.36
LIG3-213ENST00000590630 CEP135Q66GS9 1140 aa12.83□□□□□ -0.36
LIG3-213ENST00000590630 LMBRD2Q68DH5 695 aaPredicted RBP12.83□□□□□ -0.36
LIG3-213ENST00000590630 CENPPQ6IPU0 288 aa12.83□□□□□ -0.36
LIG3-213ENST00000590630 C15orf39Q6ZRI6 1047 aa12.83□□□□□ -0.36
LIG3-213ENST00000590630 CMASQ8NFW8 434 aaPredicted RBP12.83□□□□□ -0.36
LIG3-213ENST00000590630 OR5B17Q8NGF7 314 aa12.83□□□□□ -0.36
LIG3-213ENST00000590630 SUSD6Q92537 303 aa12.83□□□□□ -0.36
LIG3-213ENST00000590630 NECTIN4Q96NY8 510 aa12.83□□□□□ -0.36
LIG3-213ENST00000590630 PRKAG3Q9UGI9 489 aa12.83□□□□□ -0.36
LIG3-213ENST00000590630 SIX4Q9UIU6 781 aa12.83□□□□□ -0.36
LIG3-213ENST00000590630 FBXL5Q9UKA1 691 aa12.83□□□□□ -0.36
LIG3-213ENST00000590630 FBXW11Q9UKB1 542 aa12.83□□□□□ -0.36
LIG3-213ENST00000590630 MAN1B1Q9UKM7 699 aa12.83□□□□□ -0.36
LIG3-213ENST00000590630 AGAP1Q9UPQ3 857 aa12.83□□□□□ -0.36
LIG3-213ENST00000590630 CYB561D2O14569 222 aa12.82□□□□□ -0.36
LIG3-213ENST00000590630 PSMA7O14818 248 aa12.82□□□□□ -0.36
LIG3-213ENST00000590630 ADAM12O43184 909 aa12.82□□□□□ -0.36
LIG3-213ENST00000590630 PAPLNO95428 1278 aa12.82□□□□□ -0.36
LIG3-213ENST00000590630 KRT19P08727 400 aa12.82□□□□□ -0.36
LIG3-213ENST00000590630 SPATA31D3P0C874 917 aa12.82□□□□□ -0.36
LIG3-213ENST00000590630 CASP4P49662 377 aa12.82□□□□□ -0.36
LIG3-213ENST00000590630 AP3M2P53677 418 aa12.82□□□□□ -0.36
LIG3-213ENST00000590630 ROR1Q01973 937 aa12.82□□□□□ -0.36
LIG3-213ENST00000590630 LRRC63Q05C16 580 aa12.82□□□□□ -0.36
LIG3-213ENST00000590630 ENPEPQ07075 957 aa12.82□□□□□ -0.36
LIG3-213ENST00000590630 MYO1EQ12965 1108 aa12.82□□□□□ -0.36
LIG3-213ENST00000590630 ADAM9Q13443 819 aa12.82□□□□□ -0.36
LIG3-213ENST00000590630 RARS2Q5T160 578 aaKnown RBP12.82□□□□□ -0.36
LIG3-213ENST00000590630 LIN9Q5TKA1 542 aa12.82□□□□□ -0.36
LIG3-213ENST00000590630 OVOS1Q6IE37 1185 aa12.82□□□□□ -0.36
LIG3-213ENST00000590630 RSPO2Q6UXX9 243 aaPredicted RBP12.82□□□□□ -0.36
LIG3-213ENST00000590630 CYP26C1Q6V0L0 522 aa12.82□□□□□ -0.36
LIG3-213ENST00000590630 SPATA31D4Q6ZUB0 917 aa12.82□□□□□ -0.36
LIG3-213ENST00000590630 RTL10Q7L3V2 364 aa12.82□□□□□ -0.36
LIG3-213ENST00000590630 TRAPPC11Q7Z392 1133 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms