RNA–Protein interactions for RNA: ENST00000574022.1

CHD3-217, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 103 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-217ENST00000574022 CCNG2Q16589 344 aa2.4□□□□□ -2.03
CHD3-217ENST00000574022 MAPKAPK3Q16644 382 aa2.4□□□□□ -2.03
CHD3-217ENST00000574022 ATP2B3Q16720 1220 aa2.4□□□□□ -2.03
CHD3-217ENST00000574022 SKIDA1Q1XH10 827 aa2.4□□□□□ -2.03
CHD3-217ENST00000574022 CR1LQ2VPA4 569 aa2.4□□□□□ -2.03
CHD3-217ENST00000574022 WDR72Q3MJ13 1102 aa2.4□□□□□ -2.03
CHD3-217ENST00000574022 SPECC1Q5M775 1068 aa2.4□□□□□ -2.03
CHD3-217ENST00000574022 ARMC3Q5W041 872 aa2.4□□□□□ -2.03
CHD3-217ENST00000574022 HAUS3Q68CZ6 603 aa2.4□□□□□ -2.03
CHD3-217ENST00000574022 GRAMD4Q6IC98 578 aa2.4□□□□□ -2.03
CHD3-217ENST00000574022 LIN54Q6MZP7 749 aa2.4□□□□□ -2.03
CHD3-217ENST00000574022 TMC5Q6UXY8 1006 aa2.4□□□□□ -2.03
CHD3-217ENST00000574022 CD300LDQ6UXZ3 194 aa2.4□□□□□ -2.03
CHD3-217ENST00000574022 ETV3LQ6ZN32 361 aa2.4□□□□□ -2.03
CHD3-217ENST00000574022 OTOP2Q7RTS6 562 aa2.4□□□□□ -2.03
CHD3-217ENST00000574022 GALNT5Q7Z7M9 940 aa2.4□□□□□ -2.03
CHD3-217ENST00000574022 NLRX1Q86UT6 975 aa2.4□□□□□ -2.03
CHD3-217ENST00000574022 ZC3H18Q86VM9 953 aaKnown RBP2.4□□□□□ -2.03
CHD3-217ENST00000574022 GATAD2AQ86YP4 633 aa2.4□□□□□ -2.03
CHD3-217ENST00000574022 MIB1Q86YT6 1006 aa2.4□□□□□ -2.03
CHD3-217ENST00000574022 UNC5BQ8IZJ1 945 aa2.4□□□□□ -2.03
CHD3-217ENST00000574022 MPP5Q8N3R9 675 aa2.4□□□□□ -2.03
CHD3-217ENST00000574022 TCP11L2Q8N4U5 519 aa2.4□□□□□ -2.03
CHD3-217ENST00000574022 PCSK9Q8NBP7 692 aaKnown RBP2.4□□□□□ -2.03
CHD3-217ENST00000574022 ADAMTS18Q8TE60 1221 aa2.4□□□□□ -2.03
CHD3-217ENST00000574022 BCL7CQ8WUZ0 217 aaPredicted RBP2.4□□□□□ -2.03
CHD3-217ENST00000574022 ZNF480Q8WV37 535 aa2.4□□□□□ -2.03
CHD3-217ENST00000574022 RFFLQ8WZ73 363 aa2.4□□□□□ -2.03
CHD3-217ENST00000574022 RRP36Q96EU6 259 aaKnown RBP2.4□□□□□ -2.03
CHD3-217ENST00000574022 RSRC1Q96IZ7 334 aaKnown RBP2.4□□□□□ -2.03
CHD3-217ENST00000574022 COG8Q96MW5 612 aa2.4□□□□□ -2.03
CHD3-217ENST00000574022 KCNC2Q96PR1 638 aa2.4□□□□□ -2.03
CHD3-217ENST00000574022 UIMC1Q96RL1 719 aa2.4□□□□□ -2.03
CHD3-217ENST00000574022 TREX2Q9BQ50 279 aaPredicted RBP2.4□□□□□ -2.03
CHD3-217ENST00000574022 TACO1Q9BSH4 297 aaKnown RBP2.4□□□□□ -2.03
CHD3-217ENST00000574022 LMAN2LQ9H0V9 348 aa2.4□□□□□ -2.03
CHD3-217ENST00000574022 TAF1DQ9H5J8 278 aaPredicted RBP2.4□□□□□ -2.03
CHD3-217ENST00000574022 BCAS3Q9H6U6 928 aa2.4□□□□□ -2.03
CHD3-217ENST00000574022 C19orf44Q9H6X5 657 aa2.4□□□□□ -2.03
CHD3-217ENST00000574022 PRKRIP1Q9H875 184 aaPredicted RBP2.4□□□□□ -2.03
CHD3-217ENST00000574022 TNFRSF12AQ9NP84 129 aa2.4□□□□□ -2.03
CHD3-217ENST00000574022 DLL4Q9NR61 685 aa2.4□□□□□ -2.03
CHD3-217ENST00000574022 TLR9Q9NR96 1032 aa2.4□□□□□ -2.03
CHD3-217ENST00000574022 USP40Q9NVE5 1235 aa2.4□□□□□ -2.03
CHD3-217ENST00000574022 SPATA6Q9NWH7 488 aaPredicted RBP2.4□□□□□ -2.03
CHD3-217ENST00000574022 NKIRAS2Q9NYR9 191 aa2.4□□□□□ -2.03
CHD3-217ENST00000574022 GPRC5DQ9NZD1 345 aa2.4□□□□□ -2.03
CHD3-217ENST00000574022 TRPS1Q9UHF7 1281 aa2.4□□□□□ -2.03
CHD3-217ENST00000574022 FEM1BQ9UK73 627 aa2.4□□□□□ -2.03
CHD3-217ENST00000574022 AJAP1Q9UKB5 411 aaPredicted RBP2.4□□□□□ -2.03
CHD3-217ENST00000574022 A0A0G2JNJ9 132 aa2.39□□□□□ -2.03
CHD3-217ENST00000574022 MBD3L4A6NDZ8 208 aaPredicted RBP2.39□□□□□ -2.03
CHD3-217ENST00000574022 MBD3L3A6NE82 208 aaPredicted RBP2.39□□□□□ -2.03
CHD3-217ENST00000574022 PRSS29PA6NIE9 313 aa2.39□□□□□ -2.03
CHD3-217ENST00000574022 NUDT19A8MXV4 375 aa2.39□□□□□ -2.03
CHD3-217ENST00000574022 TMEM233B4DJY2 109 aa2.39□□□□□ -2.03
CHD3-217ENST00000574022 TEX33O43247 280 aa2.39□□□□□ -2.03
CHD3-217ENST00000574022 ADCY6O43306 1168 aa2.39□□□□□ -2.03
CHD3-217ENST00000574022 PLOD3O60568 738 aa2.39□□□□□ -2.03
CHD3-217ENST00000574022 ITGA10O75578 1167 aa2.39□□□□□ -2.03
CHD3-217ENST00000574022 USP1O94782 785 aa2.39□□□□□ -2.03
CHD3-217ENST00000574022 ALDH1A2O94788 518 aa2.39□□□□□ -2.03
CHD3-217ENST00000574022 ACTL6BO94805 426 aa2.39□□□□□ -2.03
CHD3-217ENST00000574022 UNC5CO95185 931 aa2.39□□□□□ -2.03
CHD3-217ENST00000574022 MATN4O95460 622 aa2.39□□□□□ -2.03
CHD3-217ENST00000574022 IL18BPO95998 194 aa2.39□□□□□ -2.03
CHD3-217ENST00000574022 A1BGP04217 495 aa2.39□□□□□ -2.03
CHD3-217ENST00000574022 GNAI2P04899 355 aa2.39□□□□□ -2.03
CHD3-217ENST00000574022 GJB1P08034 283 aa2.39□□□□□ -2.03
CHD3-217ENST00000574022 ZSCAN22P10073 491 aaPredicted RBP2.39□□□□□ -2.03
CHD3-217ENST00000574022 RARBP10826 455 aa2.39□□□□□ -2.03
CHD3-217ENST00000574022 MYCLP12524 364 aaPredicted RBP2.39□□□□□ -2.03
CHD3-217ENST00000574022 GYS1P13807 737 aa2.39□□□□□ -2.03
CHD3-217ENST00000574022 IL1R1P14778 569 aa2.39□□□□□ -2.03
CHD3-217ENST00000574022 IL2RBP14784 551 aa2.39□□□□□ -2.03
CHD3-217ENST00000574022 NPPBP16860 134 aa2.39□□□□□ -2.03
CHD3-217ENST00000574022 RXRAP19793 462 aa2.39□□□□□ -2.03
CHD3-217ENST00000574022 FSTP19883 344 aa2.39□□□□□ -2.03
CHD3-217ENST00000574022 BTF3P20290 206 aaKnown RBP2.39□□□□□ -2.03
CHD3-217ENST00000574022 FPR1P21462 350 aa2.39□□□□□ -2.03
CHD3-217ENST00000574022 SDHBP21912 280 aa2.39□□□□□ -2.03
CHD3-217ENST00000574022 PCSK1P29120 753 aa2.39□□□□□ -2.03
CHD3-217ENST00000574022 GUCY1A2P33402 732 aa2.39□□□□□ -2.03
CHD3-217ENST00000574022 TRHRP34981 398 aaPredicted RBP2.39□□□□□ -2.03
CHD3-217ENST00000574022 HOXD12P35452 270 aa2.39□□□□□ -2.03
CHD3-217ENST00000574022 KRT20P35900 424 aa2.39□□□□□ -2.03
CHD3-217ENST00000574022 ADCY8P40145 1251 aa2.39□□□□□ -2.03
CHD3-217ENST00000574022 GATA4P43694 442 aa2.39□□□□□ -2.03
CHD3-217ENST00000574022 CASP6P55212 293 aa2.39□□□□□ -2.03
CHD3-217ENST00000574022 WNT3AP56704 352 aa2.39□□□□□ -2.03
CHD3-217ENST00000574022 ERVFC1P60507 584 aa2.39□□□□□ -2.03
CHD3-217ENST00000574022 ERVFRD-1P60508 538 aa2.39□□□□□ -2.03
CHD3-217ENST00000574022 ACTR2P61160 394 aa2.39□□□□□ -2.03
CHD3-217ENST00000574022 AP2B1P63010 937 aa2.39□□□□□ -2.03
CHD3-217ENST00000574022 VAMP2P63027 116 aa2.39□□□□□ -2.03
CHD3-217ENST00000574022 POU6F2P78424 691 aaPredicted RBP2.39□□□□□ -2.03
CHD3-217ENST00000574022 ZNF200P98182 395 aaPredicted RBP2.39□□□□□ -2.03
CHD3-217ENST00000574022 CHRNDQ07001 517 aa2.39□□□□□ -2.03
CHD3-217ENST00000574022 LRP8Q14114 963 aa2.39□□□□□ -2.03
CHD3-217ENST00000574022 MYBPC2Q14324 1141 aa2.39□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms