RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 GPATCH1Q9BRR8 931 aaKnown RBP11.44□□□□□ -0.58
CLK3-226ENST00000569406 MYLK2Q9H1R3 596 aa11.44□□□□□ -0.58
CLK3-226ENST00000569406 KBTBD4Q9NVX7 518 aa11.44□□□□□ -0.58
CLK3-226ENST00000569406 STK32BQ9NY57 414 aa11.44□□□□□ -0.58
CLK3-226ENST00000569406 NDUFA13Q9P0J0 144 aa11.44□□□□□ -0.58
CLK3-226ENST00000569406 MROH7Q68CQ1 1323 aa11.43□□□□□ -0.58
CLK3-226ENST00000569406 FAM196BA6NMK8 535 aa11.43□□□□□ -0.58
CLK3-226ENST00000569406 PPP1R11O60927 126 aaPredicted RBP11.43□□□□□ -0.58
CLK3-226ENST00000569406 CBX6O95503 412 aa11.43□□□□□ -0.58
CLK3-226ENST00000569406 ESRRAP11474 423 aaPredicted RBP11.43□□□□□ -0.58
CLK3-226ENST00000569406 POLR2EP19388 210 aaKnown RBP11.43□□□□□ -0.58
CLK3-226ENST00000569406 CDH3P22223 829 aa11.43□□□□□ -0.58
CLK3-226ENST00000569406 IFNA8P32881 189 aa11.43□□□□□ -0.58
CLK3-226ENST00000569406 S100A5P33763 92 aa11.43□□□□□ -0.58
CLK3-226ENST00000569406 ETV3P41162 512 aa11.43□□□□□ -0.58
CLK3-226ENST00000569406 NT5C2P49902 561 aa11.43□□□□□ -0.58
CLK3-226ENST00000569406 IFI35P80217 286 aaPredicted RBP11.43□□□□□ -0.58
CLK3-226ENST00000569406 DSG1Q02413 1049 aa11.43□□□□□ -0.58
CLK3-226ENST00000569406 GIT2Q14161 759 aa11.43□□□□□ -0.58
CLK3-226ENST00000569406 LRRC36Q1X8D7 754 aa11.43□□□□□ -0.58
CLK3-226ENST00000569406 GJC2Q5T442 439 aaPredicted RBP11.43□□□□□ -0.58
CLK3-226ENST00000569406 NPLOC4Q8TAT6 608 aa11.43□□□□□ -0.58
CLK3-226ENST00000569406 COQ7Q99807 217 aa11.43□□□□□ -0.58
CLK3-226ENST00000569406 B3GNT4Q9C0J1 378 aa11.43□□□□□ -0.58
CLK3-226ENST00000569406 AZI2Q9H6S1 392 aa11.43□□□□□ -0.58
CLK3-226ENST00000569406 METTL14Q9HCE5 456 aaKnown RBP11.43□□□□□ -0.58
CLK3-226ENST00000569406 DISC1Q9NRI5 854 aa11.43□□□□□ -0.58
CLK3-226ENST00000569406 KRT82Q9NSB4 513 aa11.43□□□□□ -0.58
CLK3-226ENST00000569406 WASF2Q9Y6W5 498 aa11.43□□□□□ -0.58
CLK3-226ENST00000569406 MCF2LO15068 1137 aa11.43□□□□□ -0.58
CLK3-226ENST00000569406 ATP2B4P23634 1241 aa11.43□□□□□ -0.58
CLK3-226ENST00000569406 ANXA13P27216 316 aa11.43□□□□□ -0.58
CLK3-226ENST00000569406 ATICP31939 592 aa11.43□□□□□ -0.58
CLK3-226ENST00000569406 ERVK-9P63128 1117 aa11.43□□□□□ -0.58
CLK3-226ENST00000569406 NOP14P78316 857 aaKnown RBP11.43□□□□□ -0.58
CLK3-226ENST00000569406 COL19A1Q14993 1142 aa11.43□□□□□ -0.58
CLK3-226ENST00000569406 HSP90AA5PQ58FG0 334 aa11.43□□□□□ -0.58
CLK3-226ENST00000569406 MFSD14BQ5SR56 506 aa11.43□□□□□ -0.58
CLK3-226ENST00000569406 PLEKHO2Q8TD55 490 aa11.43□□□□□ -0.58
CLK3-226ENST00000569406 NEURL2Q9BR09 285 aa11.43□□□□□ -0.58
CLK3-226ENST00000569406 WDR6Q9NNW5 1121 aaKnown RBP11.43□□□□□ -0.58
CLK3-226ENST00000569406 C10orf71Q711Q0 1435 aa11.43□□□□□ -0.58
CLK3-226ENST00000569406 BTBD19C9JJ37 291 aa11.43□□□□□ -0.58
CLK3-226ENST00000569406 KLRF2D3W0D1 207 aa11.43□□□□□ -0.58
CLK3-226ENST00000569406 VILLO15195 856 aa11.43□□□□□ -0.58
CLK3-226ENST00000569406 ATP6V1B1P15313 513 aa11.43□□□□□ -0.58
CLK3-226ENST00000569406 GNA11P29992 359 aa11.43□□□□□ -0.58
CLK3-226ENST00000569406 LONP1P36776 959 aaKnown RBP11.43□□□□□ -0.58
CLK3-226ENST00000569406 SKIV2L2P42285 1042 aaKnown RBP11.43□□□□□ -0.58
CLK3-226ENST00000569406 STT3AP46977 705 aa11.43□□□□□ -0.58
CLK3-226ENST00000569406 PTK2Q05397 1052 aa11.43□□□□□ -0.58
CLK3-226ENST00000569406 TDRD12Q587J7 1177 aaKnown RBP11.43□□□□□ -0.58
CLK3-226ENST00000569406 CROCCP3Q8IVE0 287 aa11.43□□□□□ -0.58
CLK3-226ENST00000569406 CALML6Q8TD86 181 aa11.43□□□□□ -0.58
CLK3-226ENST00000569406 CRAMP1Q96RY5 1269 aa11.43□□□□□ -0.58
CLK3-226ENST00000569406 EYA3Q99504 573 aa11.43□□□□□ -0.58
CLK3-226ENST00000569406 CALN1Q9BXU9 219 aa11.43□□□□□ -0.58
CLK3-226ENST00000569406 ZHX3Q9H4I2 956 aa11.43□□□□□ -0.58
CLK3-226ENST00000569406 RIOX1Q9H6W3 641 aa11.43□□□□□ -0.58
CLK3-226ENST00000569406 GGA1Q9UJY5 639 aa11.43□□□□□ -0.58
CLK3-226ENST00000569406 MAD1L1Q9Y6D9 718 aa11.43□□□□□ -0.58
CLK3-226ENST00000569406 ZNF536O15090 1300 aa11.42□□□□□ -0.58
CLK3-226ENST00000569406 O00370 1275 aa11.42□□□□□ -0.58
CLK3-226ENST00000569406 ZNF862O60290 1169 aa11.42□□□□□ -0.58
CLK3-226ENST00000569406 HSPA1LP34931 641 aa11.42□□□□□ -0.58
CLK3-226ENST00000569406 ENTPD1P49961 510 aa11.42□□□□□ -0.58
CLK3-226ENST00000569406 CTAG1AP78358 180 aa11.42□□□□□ -0.58
CLK3-226ENST00000569406 KRT31Q15323 416 aa11.42□□□□□ -0.58
CLK3-226ENST00000569406 PDXDC1Q6P996 788 aa11.42□□□□□ -0.58
CLK3-226ENST00000569406 PPP1R21Q6ZMI0 780 aa11.42□□□□□ -0.58
CLK3-226ENST00000569406 ACMSDQ8TDX5 336 aa11.42□□□□□ -0.58
CLK3-226ENST00000569406 GLMNQ92990 594 aa11.42□□□□□ -0.58
CLK3-226ENST00000569406 TRIM31Q9BZY9 425 aa11.42□□□□□ -0.58
CLK3-226ENST00000569406 TYW1Q9NV66 732 aaKnown RBP11.42□□□□□ -0.58
CLK3-226ENST00000569406 LIMA1Q9UHB6 759 aaKnown RBP11.42□□□□□ -0.58
CLK3-226ENST00000569406 PCDHB2Q9Y5E7 798 aa11.42□□□□□ -0.58
CLK3-226ENST00000569406 USP17L5A8MUK1 530 aa11.42□□□□□ -0.58
CLK3-226ENST00000569406 BUB1O43683 1085 aa11.42□□□□□ -0.58
CLK3-226ENST00000569406 TSPAN1O60635 241 aa11.42□□□□□ -0.58
CLK3-226ENST00000569406 TRMUO75648 421 aaKnown RBP11.42□□□□□ -0.58
CLK3-226ENST00000569406 KRT4P19013 534 aa11.42□□□□□ -0.58
CLK3-226ENST00000569406 HMOX2P30519 316 aa11.42□□□□□ -0.58
CLK3-226ENST00000569406 ARL1P40616 181 aaPredicted RBP11.42□□□□□ -0.58
CLK3-226ENST00000569406 GSTO1P78417 241 aa11.42□□□□□ -0.58
CLK3-226ENST00000569406 PFKPQ01813 784 aa11.42□□□□□ -0.58
CLK3-226ENST00000569406 C12orf50Q8NA57 414 aaPredicted RBP11.42□□□□□ -0.58
CLK3-226ENST00000569406 LILRB1Q8NHL6 650 aaPredicted RBP11.42□□□□□ -0.58
CLK3-226ENST00000569406 SH3TC2Q8TF17 1288 aa11.42□□□□□ -0.58
CLK3-226ENST00000569406 TCF12Q99081 682 aa11.42□□□□□ -0.58
CLK3-226ENST00000569406 RNF38Q9H0F5 515 aa11.42□□□□□ -0.58
CLK3-226ENST00000569406 DNAJC18Q9H819 358 aa11.42□□□□□ -0.58
CLK3-226ENST00000569406 MKNK2Q9HBH9 465 aa11.42□□□□□ -0.58
CLK3-226ENST00000569406 KCNQ5Q9NR82 932 aa11.42□□□□□ -0.58
CLK3-226ENST00000569406 PCDHAC2Q9Y5I4 1007 aa11.42□□□□□ -0.58
CLK3-226ENST00000569406 SMCHD1A6NHR9 2005 aa11.42□□□□□ -0.58
CLK3-226ENST00000569406 GOLGA8JA6NMD2 632 aa11.42□□□□□ -0.58
CLK3-226ENST00000569406 GTPBP6O43824 516 aaPredicted RBP11.42□□□□□ -0.58
CLK3-226ENST00000569406 WEE1P30291 646 aa11.42□□□□□ -0.58
CLK3-226ENST00000569406 UBA7P41226 1012 aa11.42□□□□□ -0.58
CLK3-226ENST00000569406 ACADSBP45954 432 aa11.42□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms