RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, humanhuman

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-222ENST00000568232 MAEAQ7L5Y9 396 aa12.96□□□□□ -0.33
CLK3-222ENST00000568232 ARID3BQ8IVW6 561 aaPredicted RBP12.96□□□□□ -0.33
CLK3-222ENST00000568232 BLIDQ8IZY5 108 aa12.96□□□□□ -0.33
CLK3-222ENST00000568232 BRF1Q92994 677 aa12.96□□□□□ -0.33
CLK3-222ENST00000568232 E2F7Q96AV8 911 aa12.96□□□□□ -0.33
CLK3-222ENST00000568232 FAM20AQ96MK3 541 aa12.96□□□□□ -0.33
CLK3-222ENST00000568232 PPP1R10Q96QC0 940 aaKnown RBP12.96□□□□□ -0.33
CLK3-222ENST00000568232 HHIPQ96QV1 700 aa12.96□□□□□ -0.33
CLK3-222ENST00000568232 RNF26Q9BY78 433 aaPredicted RBP12.96□□□□□ -0.33
CLK3-222ENST00000568232 C22orf23Q9BZE7 217 aa12.96□□□□□ -0.33
CLK3-222ENST00000568232 FZD8Q9H461 694 aa12.96□□□□□ -0.33
CLK3-222ENST00000568232 GPRC5CQ9NQ84 441 aa12.96□□□□□ -0.33
CLK3-222ENST00000568232 SH3GLB2Q9NR46 395 aa12.96□□□□□ -0.33
CLK3-222ENST00000568232 FBXL5Q9UKA1 691 aa12.96□□□□□ -0.33
CLK3-222ENST00000568232 INVSQ9Y283 1065 aa12.96□□□□□ -0.33
CLK3-222ENST00000568232 NEUROG3Q9Y4Z2 214 aa12.96□□□□□ -0.33
CLK3-222ENST00000568232 FLNBO75369 2602 aaKnown RBP12.96□□□□□ -0.33
CLK3-222ENST00000568232 BPTFQ12830 3046 aa12.95□□□□□ -0.34
CLK3-222ENST00000568232 N4BP3O15049 544 aa12.95□□□□□ -0.34
CLK3-222ENST00000568232 DGAT1O75907 488 aa12.95□□□□□ -0.34
CLK3-222ENST00000568232 LIG1P18858 919 aa12.95□□□□□ -0.34
CLK3-222ENST00000568232 NPY5RQ15761 445 aa12.95□□□□□ -0.34
CLK3-222ENST00000568232 TMEM132AQ24JP5 1023 aa12.95□□□□□ -0.34
CLK3-222ENST00000568232 FSTL4Q6MZW2 842 aa12.95□□□□□ -0.34
CLK3-222ENST00000568232 TMEM209Q96SK2 561 aa12.95□□□□□ -0.34
CLK3-222ENST00000568232 LRRC3Q9BY71 257 aa12.95□□□□□ -0.34
CLK3-222ENST00000568232 GPR88Q9GZN0 384 aa12.95□□□□□ -0.34
CLK3-222ENST00000568232 NCOA5Q9HCD5 579 aaKnown RBP12.95□□□□□ -0.34
CLK3-222ENST00000568232 TMEM9BQ9NQ34 198 aa12.95□□□□□ -0.34
CLK3-222ENST00000568232 PRMT7Q9NVM4 692 aaPredicted RBP12.95□□□□□ -0.34
CLK3-222ENST00000568232 MSRB2Q9Y3D2 182 aa12.95□□□□□ -0.34
CLK3-222ENST00000568232 GPSM3Q9Y4H4 160 aa12.95□□□□□ -0.34
CLK3-222ENST00000568232 RHOBTB1O94844 696 aa12.94□□□□□ -0.34
CLK3-222ENST00000568232 PRPF4BQ13523 1007 aaKnown RBP12.94□□□□□ -0.34
CLK3-222ENST00000568232 MRPL58Q14197 206 aaKnown RBP12.94□□□□□ -0.34
CLK3-222ENST00000568232 ELF2Q15723 593 aa12.94□□□□□ -0.34
CLK3-222ENST00000568232 CTXN3Q4LDR2 81 aa12.94□□□□□ -0.34
CLK3-222ENST00000568232 ARHGAP29Q52LW3 1261 aa12.94□□□□□ -0.34
CLK3-222ENST00000568232 TPGS2Q68CL5 300 aa12.94□□□□□ -0.34
CLK3-222ENST00000568232 RNF19BQ6ZMZ0 732 aa12.94□□□□□ -0.34
CLK3-222ENST00000568232 PDZD3Q86UT5 571 aa12.94□□□□□ -0.34
CLK3-222ENST00000568232 LEMD2Q8NC56 503 aa12.94□□□□□ -0.34
CLK3-222ENST00000568232 PRIMPOLQ96LW4 560 aa12.94□□□□□ -0.34
CLK3-222ENST00000568232 MKNK1Q9BUB5 465 aa12.94□□□□□ -0.34
CLK3-222ENST00000568232 ARID2Q68CP9 1835 aa12.94□□□□□ -0.34
CLK3-222ENST00000568232 NID2Q14112 1375 aa12.94□□□□□ -0.34
CLK3-222ENST00000568232 CELSR3Q9NYQ7 3312 aa12.93□□□□□ -0.34
CLK3-222ENST00000568232 SPAARA0A1B0GVQ0 90 aa12.93□□□□□ -0.34
CLK3-222ENST00000568232 DPYSL4O14531 572 aa12.93□□□□□ -0.34
CLK3-222ENST00000568232 KHNYNO15037 678 aaKnown RBP12.93□□□□□ -0.34
CLK3-222ENST00000568232 USO1O60763 962 aaKnown RBP12.93□□□□□ -0.34
CLK3-222ENST00000568232 CAPNS1P04632 268 aa12.93□□□□□ -0.34
CLK3-222ENST00000568232 IFNAR1P17181 557 aa12.93□□□□□ -0.34
CLK3-222ENST00000568232 CCT2P78371 535 aaKnown RBP12.93□□□□□ -0.34
CLK3-222ENST00000568232 IRX4P78413 519 aa12.93□□□□□ -0.34
CLK3-222ENST00000568232 FAM187BQ17R55 369 aa12.93□□□□□ -0.34
CLK3-222ENST00000568232 COL28A1Q2UY09 1125 aa12.93□□□□□ -0.34
CLK3-222ENST00000568232 HAUS6Q7Z4H7 955 aa12.93□□□□□ -0.34
CLK3-222ENST00000568232 PROSER1Q86XN7 944 aa12.93□□□□□ -0.34
CLK3-222ENST00000568232 TMC8Q8IU68 726 aa12.93□□□□□ -0.34
CLK3-222ENST00000568232 CAMKK1Q8N5S9 505 aa12.93□□□□□ -0.34
CLK3-222ENST00000568232 PIGOQ8TEQ8 1089 aa12.93□□□□□ -0.34
CLK3-222ENST00000568232 CHFRQ96EP1 664 aa12.93□□□□□ -0.34
CLK3-222ENST00000568232 UROC1Q96N76 676 aa12.93□□□□□ -0.34
CLK3-222ENST00000568232 AIFM3Q96NN9 605 aa12.93□□□□□ -0.34
CLK3-222ENST00000568232 BBC3Q96PG8 261 aaPredicted RBP12.93□□□□□ -0.34
CLK3-222ENST00000568232 EIF2AK1Q9BQI3 630 aaKnown RBP12.93□□□□□ -0.34
CLK3-222ENST00000568232 DNAJC25Q9H1X3 360 aa12.93□□□□□ -0.34
CLK3-222ENST00000568232 FBRSL1Q9HCM7 1045 aaKnown RBP12.93□□□□□ -0.34
CLK3-222ENST00000568232 AFF4Q9UHB7 1163 aaKnown RBP12.93□□□□□ -0.34
CLK3-222ENST00000568232 EML5Q05BV3 1969 aa12.92□□□□□ -0.34
CLK3-222ENST00000568232 SMIM28A0A1B0GU29 152 aa12.92□□□□□ -0.34
CLK3-222ENST00000568232 H7C4K7 107 aa12.92□□□□□ -0.34
CLK3-222ENST00000568232 PODXLO00592 558 aa12.92□□□□□ -0.34
CLK3-222ENST00000568232 MARCH6O60337 910 aa12.92□□□□□ -0.34
CLK3-222ENST00000568232 CCNT1O60563 726 aaKnown RBP12.92□□□□□ -0.34
CLK3-222ENST00000568232 ATG13O75143 517 aa12.92□□□□□ -0.34
CLK3-222ENST00000568232 RNF40O75150 1001 aa12.92□□□□□ -0.34
CLK3-222ENST00000568232 VNN2O95498 520 aa12.92□□□□□ -0.34
CLK3-222ENST00000568232 PRAMEF12O95522 483 aa12.92□□□□□ -0.34
CLK3-222ENST00000568232 EGFP01133 1207 aa12.92□□□□□ -0.34
CLK3-222ENST00000568232 GBP1P32455 592 aa12.92□□□□□ -0.34
CLK3-222ENST00000568232 RARRES1P49788 294 aa12.92□□□□□ -0.34
CLK3-222ENST00000568232 ITPRIPL2Q3MIP1 535 aa12.92□□□□□ -0.34
CLK3-222ENST00000568232 TSGA10IPQ3SY00 556 aa12.92□□□□□ -0.34
CLK3-222ENST00000568232 TMEM196Q5HYL7 178 aa12.92□□□□□ -0.34
CLK3-222ENST00000568232 CDCA2Q69YH5 1023 aaPredicted RBP12.92□□□□□ -0.34
CLK3-222ENST00000568232 BSNDQ8WZ55 320 aa12.92□□□□□ -0.34
CLK3-222ENST00000568232 HSD17B14Q9BPX1 270 aa12.92□□□□□ -0.34
CLK3-222ENST00000568232 ADPGKQ9BRR6 497 aa12.92□□□□□ -0.34
CLK3-222ENST00000568232 CRISPLD1Q9H336 500 aa12.92□□□□□ -0.34
CLK3-222ENST00000568232 ANKEF1Q9NU02 776 aa12.92□□□□□ -0.34
CLK3-222ENST00000568232 YIPF1Q9Y548 306 aa12.92□□□□□ -0.34
CLK3-222ENST00000568232 SPAG17Q6Q759 2223 aa12.92□□□□□ -0.34
CLK3-222ENST00000568232 ADAMTS20P59510 1910 aa12.92□□□□□ -0.34
CLK3-222ENST00000568232 OTOL1A6NHN0 477 aaPredicted RBP12.91□□□□□ -0.34
CLK3-222ENST00000568232 SYN3O14994 580 aa12.91□□□□□ -0.34
CLK3-222ENST00000568232 MEFVO15553 781 aaPredicted RBP12.91□□□□□ -0.34
CLK3-222ENST00000568232 OR4Q2P0C623 313 aa12.91□□□□□ -0.34
CLK3-222ENST00000568232 CPB1P15086 417 aa12.91□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms