RNA–Protein interactions for RNA: ENST00000560858.1

SPG11-223, Transcript of SPG11, spatacsin vesicle trafficking associated, human

TSL 5

Gene SPG11, Length 447 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SPG11-223	ENST00000560858	GNL2	Q13823	731 aa	Known RBP	2.92	□□□□□ -1.94
SPG11-223	ENST00000560858	ZNF169	Q14929	603 aa	Predicted RBP	2.92	□□□□□ -1.94
SPG11-223	ENST00000560858	MTHFSD	Q2M296	383 aa	Known RBP	2.92	□□□□□ -1.94
SPG11-223	ENST00000560858	GLIPR1L2	Q4G1C9	344 aa		2.92	□□□□□ -1.94
SPG11-223	ENST00000560858	HSP90AB2P	Q58FF8	381 aa		2.92	□□□□□ -1.94
SPG11-223	ENST00000560858	TTC38	Q5R3I4	469 aa		2.92	□□□□□ -1.94
SPG11-223	ENST00000560858	CCDC30	Q5VVM6	783 aa		2.92	□□□□□ -1.94
SPG11-223	ENST00000560858	DOK3	Q7L591	496 aa		2.92	□□□□□ -1.94
SPG11-223	ENST00000560858	SLC44A3	Q8N4M1	653 aa		2.92	□□□□□ -1.94
SPG11-223	ENST00000560858	CELF2-AS1	Q8N7Q2	184 aa		2.92	□□□□□ -1.94
SPG11-223	ENST00000560858	C2orf69	Q8N8R5	385 aa		2.92	□□□□□ -1.94
SPG11-223	ENST00000560858	FAM184A	Q8NB25	1140 aa		2.92	□□□□□ -1.94
SPG11-223	ENST00000560858	SPATA3	Q8NHX4	192 aa		2.92	□□□□□ -1.94
SPG11-223	ENST00000560858	SYAP1	Q96A49	352 aa	Predicted RBP	2.92	□□□□□ -1.94
SPG11-223	ENST00000560858	ZNF669	Q96BR6	464 aa	Predicted RBP	2.92	□□□□□ -1.94
SPG11-223	ENST00000560858	MAP7D2	Q96T17	732 aa		2.92	□□□□□ -1.94
SPG11-223	ENST00000560858	STK31	Q9BXU1	1019 aa		2.92	□□□□□ -1.94
SPG11-223	ENST00000560858	CPEB1	Q9BZB8	566 aa	Known RBP	2.92	□□□□□ -1.94
SPG11-223	ENST00000560858	CELF4	Q9BZC1	486 aa	Known RBP	2.92	□□□□□ -1.94
SPG11-223	ENST00000560858	OSBPL6	Q9BZF3	934 aa		2.92	□□□□□ -1.94
SPG11-223	ENST00000560858	IL25	Q9H293	177 aa		2.92	□□□□□ -1.94
SPG11-223	ENST00000560858	ZNF408	Q9H9D4	720 aa		2.92	□□□□□ -1.94
SPG11-223	ENST00000560858	SPON1	Q9HCB6	807 aa		2.92	□□□□□ -1.94
SPG11-223	ENST00000560858	ALG13	Q9NP73	1137 aa	Known RBP	2.92	□□□□□ -1.94
SPG11-223	ENST00000560858	TSPYL4	Q9UJ04	414 aa		2.92	□□□□□ -1.94
SPG11-223	ENST00000560858	EXOC6B	Q9Y2D4	811 aa		2.92	□□□□□ -1.94
SPG11-223	ENST00000560858	CHST2	Q9Y4C5	530 aa		2.92	□□□□□ -1.94
SPG11-223	ENST00000560858	TNKS1BP1	Q9C0C2	1729 aa	Known RBP	2.92	□□□□□ -1.94
SPG11-223	ENST00000560858	NWD2	Q9ULI1	1742 aa		2.92	□□□□□ -1.94
SPG11-223	ENST00000560858	NPHP4	O75161	1426 aa	Predicted RBP	2.92	□□□□□ -1.94
SPG11-223	ENST00000560858	TTC41P	Q6P2S7	1318 aa		2.92	□□□□□ -1.94
SPG11-223	ENST00000560858	CCDC171	Q6TFL3	1326 aa		2.92	□□□□□ -1.94
SPG11-223	ENST00000560858	DOCK2	Q92608	1830 aa		2.91	□□□□□ -1.94
SPG11-223	ENST00000560858	WNK3	Q9BYP7	1800 aa		2.91	□□□□□ -1.94
SPG11-223	ENST00000560858	COL15A1	P39059	1388 aa		2.91	□□□□□ -1.94
SPG11-223	ENST00000560858	MED23	Q9ULK4	1368 aa		2.91	□□□□□ -1.94
SPG11-223	ENST00000560858	POLR2A	P24928	1970 aa	Known RBP	2.91	□□□□□ -1.94
SPG11-223	ENST00000560858	LRP5	O75197	1615 aa		2.91	□□□□□ -1.94
SPG11-223	ENST00000560858	NHSL1	Q5SYE7	1610 aa		2.91	□□□□□ -1.94
SPG11-223	ENST00000560858	UBA6	A0AVT1	1052 aa	Predicted RBP	2.91	□□□□□ -1.94
SPG11-223	ENST00000560858	SYCE3	A1L190	88 aa		2.91	□□□□□ -1.94
SPG11-223	ENST00000560858	WDR91	A4D1P6	747 aa		2.91	□□□□□ -1.94
SPG11-223	ENST00000560858	LRRC3C	A6NJW4	275 aa		2.91	□□□□□ -1.94
SPG11-223	ENST00000560858	LEFTY2	O00292	366 aa		2.91	□□□□□ -1.94
SPG11-223	ENST00000560858	DYNC1I1	O14576	645 aa		2.91	□□□□□ -1.94
SPG11-223	ENST00000560858	ITGAM	P11215	1152 aa		2.91	□□□□□ -1.94
SPG11-223	ENST00000560858	ZSCAN20	P17040	1043 aa	Predicted RBP	2.91	□□□□□ -1.94
SPG11-223	ENST00000560858	MGAT1	P26572	445 aa		2.91	□□□□□ -1.94
SPG11-223	ENST00000560858	HOXC9	P31274	260 aa		2.91	□□□□□ -1.94
SPG11-223	ENST00000560858	GTF2F1	P35269	517 aa	Known RBP eCLIP	2.91	□□□□□ -1.94
SPG11-223	ENST00000560858	NEK4	P51957	841 aa		2.91	□□□□□ -1.94
SPG11-223	ENST00000560858	SIM1	P81133	766 aa	Predicted RBP	2.91	□□□□□ -1.94
SPG11-223	ENST00000560858	NHLH2	Q02577	135 aa		2.91	□□□□□ -1.94
SPG11-223	ENST00000560858	MRPL49	Q13405	166 aa	Known RBP	2.91	□□□□□ -1.94
SPG11-223	ENST00000560858	TP53BP2	Q13625	1128 aa		2.91	□□□□□ -1.94
SPG11-223	ENST00000560858	CCDC183	Q5T5S1	534 aa		2.91	□□□□□ -1.94
SPG11-223	ENST00000560858	SASS6	Q6UVJ0	657 aa		2.91	□□□□□ -1.94
SPG11-223	ENST00000560858	ANKS3	Q6ZW76	656 aa		2.91	□□□□□ -1.94
SPG11-223	ENST00000560858	MTERF4	Q7Z6M4	381 aa	Known RBP	2.91	□□□□□ -1.94
SPG11-223	ENST00000560858	UNC5CL	Q8IV45	518 aa		2.91	□□□□□ -1.94
SPG11-223	ENST00000560858	RTF1	Q92541	710 aa	Known RBP	2.91	□□□□□ -1.94
SPG11-223	ENST00000560858	TUBGCP5	Q96RT8	1024 aa		2.91	□□□□□ -1.94
SPG11-223	ENST00000560858	FUCA2	Q9BTY2	467 aa		2.91	□□□□□ -1.94
SPG11-223	ENST00000560858	SPATA9	Q9BWV2	254 aa		2.91	□□□□□ -1.94
SPG11-223	ENST00000560858	ALOXE3	Q9BYJ1	711 aa		2.91	□□□□□ -1.94
SPG11-223	ENST00000560858	LSG1	Q9H089	658 aa	Known RBP	2.91	□□□□□ -1.94
SPG11-223	ENST00000560858	USP44	Q9H0E7	712 aa		2.91	□□□□□ -1.94
SPG11-223	ENST00000560858	PDCL3	Q9H2J4	239 aa		2.91	□□□□□ -1.94
SPG11-223	ENST00000560858	TSPY26P	Q9H489	355 aa		2.91	□□□□□ -1.94
SPG11-223	ENST00000560858	ACSS2	Q9NR19	701 aa		2.91	□□□□□ -1.94
SPG11-223	ENST00000560858	ING3	Q9NXR8	418 aa		2.91	□□□□□ -1.94
SPG11-223	ENST00000560858	ZNF70	Q9UC06	446 aa	Predicted RBP	2.91	□□□□□ -1.94
SPG11-223	ENST00000560858	COQ6	Q9Y2Z9	468 aa		2.91	□□□□□ -1.94
SPG11-223	ENST00000560858	TBX22	Q9Y458	520 aa		2.91	□□□□□ -1.94
SPG11-223	ENST00000560858	LRRFIP2	Q9Y608	721 aa	Known RBP	2.91	□□□□□ -1.94
SPG11-223	ENST00000560858	TIAM2	Q8IVF5	1701 aa		2.9	□□□□□ -1.94
SPG11-223	ENST00000560858	TOGARAM1	Q9Y4F4	1720 aa		2.9	□□□□□ -1.94
SPG11-223	ENST00000560858		A0A1B0GUL6	1792 aa		2.9	□□□□□ -1.94
SPG11-223	ENST00000560858	STRCP1	A6NGW2	1772 aa		2.9	□□□□□ -1.94
SPG11-223	ENST00000560858	LAMB2	P55268	1798 aa		2.9	□□□□□ -1.94
SPG11-223	ENST00000560858	CASZ1	Q86V15	1759 aa		2.9	□□□□□ -1.94
SPG11-223	ENST00000560858	MYH2	Q9UKX2	1941 aa		2.9	□□□□□ -1.95
SPG11-223	ENST00000560858	PLCH1	Q4KWH8	1693 aa		2.9	□□□□□ -1.95
SPG11-223	ENST00000560858	UQCRHL	A0A096LP55	91 aa		2.9	□□□□□ -1.95
SPG11-223	ENST00000560858	ALDH1A2	O94788	518 aa		2.9	□□□□□ -1.95
SPG11-223	ENST00000560858	SPDEF	O95238	335 aa		2.9	□□□□□ -1.95
SPG11-223	ENST00000560858	BMP15	O95972	392 aa		2.9	□□□□□ -1.95
SPG11-223	ENST00000560858	FOS	P01100	380 aa	Predicted RBP	2.9	□□□□□ -1.95
SPG11-223	ENST00000560858	UQCRH	P07919	91 aa		2.9	□□□□□ -1.95
SPG11-223	ENST00000560858	UBTFL1	P0CB47	393 aa	Predicted RBP	2.9	□□□□□ -1.95
SPG11-223	ENST00000560858	RBP3	P10745	1247 aa		2.9	□□□□□ -1.95
SPG11-223	ENST00000560858	CASR	P41180	1078 aa		2.9	□□□□□ -1.95
SPG11-223	ENST00000560858	AK2	P54819	239 aa		2.9	□□□□□ -1.95
SPG11-223	ENST00000560858	UBE2H	P62256	183 aa		2.9	□□□□□ -1.95
SPG11-223	ENST00000560858	ST3GAL1	Q11201	340 aa		2.9	□□□□□ -1.95
SPG11-223	ENST00000560858	REST	Q13127	1097 aa		2.9	□□□□□ -1.95
SPG11-223	ENST00000560858	HSP90AB4P	Q58FF6	505 aa		2.9	□□□□□ -1.95
SPG11-223	ENST00000560858	LCE1E	Q5T753	118 aa		2.9	□□□□□ -1.95
SPG11-223	ENST00000560858	PRAMEF9	Q5VWM5	478 aa		2.9	□□□□□ -1.95
SPG11-223	ENST00000560858	TSHZ3	Q63HK5	1081 aa		2.9	□□□□□ -1.95

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