RNA–Protein interactions for RNA: ENST00000555759.1

SYNE3-204, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 2

Gene SYNE3, Length 5,493 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-204ENST00000555759 KLF6Q99612 283 aaPredicted RBP18.36■□□□□ 0.53
SYNE3-204ENST00000555759 TYW5A2RUC4 315 aaKnown RBP18.35■□□□□ 0.53
SYNE3-204ENST00000555759 EPHA7Q15375 998 aa18.35■□□□□ 0.53
SYNE3-204ENST00000555759 OASLQ15646 514 aaKnown RBP18.35■□□□□ 0.53
SYNE3-204ENST00000555759 FAM102AQ5T9C2 384 aaPredicted RBP18.35■□□□□ 0.53
SYNE3-204ENST00000555759 ANGPTL8Q6UXH0 198 aa18.35■□□□□ 0.53
SYNE3-204ENST00000555759 FBXO25Q8TCJ0 367 aa18.35■□□□□ 0.53
SYNE3-204ENST00000555759 NRKQ7Z2Y5 1582 aa18.35■□□□□ 0.53
SYNE3-204ENST00000555759 TBX3O15119 743 aa18.35■□□□□ 0.53
SYNE3-204ENST00000555759 APRTP07741 180 aa18.35■□□□□ 0.53
SYNE3-204ENST00000555759 RGS2P41220 211 aa18.35■□□□□ 0.53
SYNE3-204ENST00000555759 HAUS6Q7Z4H7 955 aa18.35■□□□□ 0.53
SYNE3-204ENST00000555759 SH3RF3Q8TEJ3 882 aaPredicted RBP18.35■□□□□ 0.53
SYNE3-204ENST00000555759 KRT35Q92764 455 aa18.35■□□□□ 0.53
SYNE3-204ENST00000555759 ATP5BP06576 529 aaKnown RBP18.35■□□□□ 0.53
SYNE3-204ENST00000555759 PECAM1P16284 738 aaPredicted RBP18.35■□□□□ 0.53
SYNE3-204ENST00000555759 PPIDQ08752 370 aaKnown RBP18.35■□□□□ 0.53
SYNE3-204ENST00000555759 MIGA2Q7L4E1 593 aa18.35■□□□□ 0.53
SYNE3-204ENST00000555759 CCDC103Q8IW40 242 aa18.35■□□□□ 0.53
SYNE3-204ENST00000555759 ULK4Q96C45 1275 aa18.35■□□□□ 0.53
SYNE3-204ENST00000555759 CEP95Q96GE4 821 aa18.35■□□□□ 0.53
SYNE3-204ENST00000555759 ASAP1Q9ULH1 1129 aa18.35■□□□□ 0.53
SYNE3-204ENST00000555759 OVOS2A0A0G2JMS6 1433 aa18.35■□□□□ 0.53
SYNE3-204ENST00000555759 TRPC5OSA6NMA1 111 aa18.35■□□□□ 0.53
SYNE3-204ENST00000555759 PPIP5K2O43314 1243 aa18.35■□□□□ 0.53
SYNE3-204ENST00000555759 TNFAIP8O95379 198 aa18.35■□□□□ 0.53
SYNE3-204ENST00000555759 STAT3P40763 770 aa18.35■□□□□ 0.53
SYNE3-204ENST00000555759 NUDT2P50583 147 aa18.35■□□□□ 0.53
SYNE3-204ENST00000555759 GPC3P51654 580 aa18.35■□□□□ 0.53
SYNE3-204ENST00000555759 OSTNP61366 133 aa18.35■□□□□ 0.53
SYNE3-204ENST00000555759 ATG9AQ7Z3C6 839 aa18.35■□□□□ 0.53
SYNE3-204ENST00000555759 APBB2Q92870 758 aa18.35■□□□□ 0.53
SYNE3-204ENST00000555759 TUBGCP3Q96CW5 907 aa18.35■□□□□ 0.53
SYNE3-204ENST00000555759 ZNF512BQ96KM6 892 aaPredicted RBP18.35■□□□□ 0.53
SYNE3-204ENST00000555759 RUBCNLQ9H714 662 aa18.35■□□□□ 0.53
SYNE3-204ENST00000555759 RNPEPL1Q9HAU8 725 aa18.35■□□□□ 0.53
SYNE3-204ENST00000555759 NLRP1Q9C000 1473 aa18.34■□□□□ 0.53
SYNE3-204ENST00000555759 H2AFYO75367 372 aaKnown RBP18.34■□□□□ 0.53
SYNE3-204ENST00000555759 GDF11O95390 407 aa18.34■□□□□ 0.53
SYNE3-204ENST00000555759 APOA4P06727 396 aa18.34■□□□□ 0.53
SYNE3-204ENST00000555759 HLA-DPA1P20036 260 aa18.34■□□□□ 0.53
SYNE3-204ENST00000555759 ADARP55265 1226 aaKnown RBP18.34■□□□□ 0.53
SYNE3-204ENST00000555759 FOXO4P98177 505 aa18.34■□□□□ 0.53
SYNE3-204ENST00000555759 NSUN2Q08J23 767 aaKnown RBP eCLIP18.34■□□□□ 0.53
SYNE3-204ENST00000555759 RASA2Q15283 850 aa18.34■□□□□ 0.53
SYNE3-204ENST00000555759 TMC3Q7Z5M5 1100 aa18.34■□□□□ 0.53
SYNE3-204ENST00000555759 LRRC6Q86X45 466 aa18.34■□□□□ 0.53
SYNE3-204ENST00000555759 MICU2Q8IYU8 434 aa18.34■□□□□ 0.53
SYNE3-204ENST00000555759 SNX19Q92543 992 aa18.34■□□□□ 0.53
SYNE3-204ENST00000555759 FAM111AQ96PZ2 611 aa18.34■□□□□ 0.53
SYNE3-204ENST00000555759 CYP39A1Q9NYL5 469 aa18.34■□□□□ 0.53
SYNE3-204ENST00000555759 C2CD2Q9Y426 696 aa18.34■□□□□ 0.53
SYNE3-204ENST00000555759 ERBB3P21860 1342 aa18.34■□□□□ 0.53
SYNE3-204ENST00000555759 PSMD3O43242 534 aa18.34■□□□□ 0.53
SYNE3-204ENST00000555759 PTENP60484 403 aa18.34■□□□□ 0.53
SYNE3-204ENST00000555759 SNRPFP62306 86 aaKnown RBP18.34■□□□□ 0.53
SYNE3-204ENST00000555759 MTMR1Q13613 665 aa18.34■□□□□ 0.53
SYNE3-204ENST00000555759 TSTA3Q13630 321 aaPredicted RBP18.34■□□□□ 0.53
SYNE3-204ENST00000555759 OR6B3Q8NGW1 331 aa18.34■□□□□ 0.53
SYNE3-204ENST00000555759 PRR36Q9H6K5 1346 aa18.34■□□□□ 0.53
SYNE3-204ENST00000555759 KPNA4O00629 521 aaPredicted RBP18.34■□□□□ 0.53
SYNE3-204ENST00000555759 DCTN2Q13561 401 aaKnown RBP18.34■□□□□ 0.53
SYNE3-204ENST00000555759 PCNX4Q63HM2 1172 aa18.34■□□□□ 0.53
SYNE3-204ENST00000555759 TNIP2Q8NFZ5 429 aa18.34■□□□□ 0.53
SYNE3-204ENST00000555759 GOLPH3Q9H4A6 298 aa18.34■□□□□ 0.53
SYNE3-204ENST00000555759 SLC5A4Q9NY91 659 aa18.34■□□□□ 0.53
SYNE3-204ENST00000555759 TET3O43151 1660 aa18.34■□□□□ 0.53
SYNE3-204ENST00000555759 LOC102724428A0A0B4J2F2 783 aa18.34■□□□□ 0.53
SYNE3-204ENST00000555759 SAC3D1A6NKF1 404 aa18.34■□□□□ 0.53
SYNE3-204ENST00000555759 BBOX1O75936 387 aa18.34■□□□□ 0.53
SYNE3-204ENST00000555759 VCAM1P19320 739 aa18.34■□□□□ 0.53
SYNE3-204ENST00000555759 SIK1P57059 783 aa18.34■□□□□ 0.53
SYNE3-204ENST00000555759 NIM1KQ8IY84 436 aa18.34■□□□□ 0.53
SYNE3-204ENST00000555759 NEDD1Q8NHV4 660 aa18.34■□□□□ 0.53
SYNE3-204ENST00000555759 SLC30A5Q8TAD4 765 aa18.34■□□□□ 0.53
SYNE3-204ENST00000555759 RNF139Q8WU17 664 aa18.34■□□□□ 0.53
SYNE3-204ENST00000555759 C18orf8Q96DM3 657 aa18.34■□□□□ 0.53
SYNE3-204ENST00000555759 TSPAN17Q96FV3 270 aa18.34■□□□□ 0.53
SYNE3-204ENST00000555759 ZNF184Q99676 751 aaPredicted RBP18.34■□□□□ 0.53
SYNE3-204ENST00000555759 LXNQ9BS40 222 aa18.34■□□□□ 0.53
SYNE3-204ENST00000555759 BRD8Q9H0E9 1235 aa18.34■□□□□ 0.53
SYNE3-204ENST00000555759 EFCAB1Q9HAE3 211 aa18.34■□□□□ 0.53
SYNE3-204ENST00000555759 AP1G2O75843 785 aa18.33■□□□□ 0.53
SYNE3-204ENST00000555759 USP1O94782 785 aa18.33■□□□□ 0.53
SYNE3-204ENST00000555759 DLGAP3O95886 979 aa18.33■□□□□ 0.53
SYNE3-204ENST00000555759 FXR2P51116 673 aaKnown RBP eCLIP18.33■□□□□ 0.53
SYNE3-204ENST00000555759 VCPP55072 806 aaKnown RBP18.33■□□□□ 0.53
SYNE3-204ENST00000555759 EFHC2Q5JST6 749 aa18.33■□□□□ 0.53
SYNE3-204ENST00000555759 TATDN2Q93075 761 aa18.33■□□□□ 0.53
SYNE3-204ENST00000555759 TMEM120AQ9BXJ8 343 aa18.33■□□□□ 0.53
SYNE3-204ENST00000555759 CPVLQ9H3G5 476 aa18.33■□□□□ 0.53
SYNE3-204ENST00000555759 TRIM49D1C9J1S8 452 aa18.33■□□□□ 0.53
SYNE3-204ENST00000555759 NMT1P30419 496 aaKnown RBP18.33■□□□□ 0.53
SYNE3-204ENST00000555759 CCDC85BQ15834 202 aaPredicted RBP18.33■□□□□ 0.53
SYNE3-204ENST00000555759 ERFEQ4G0M1 354 aa18.33■□□□□ 0.53
SYNE3-204ENST00000555759 TTI2Q6NXR4 508 aa18.33■□□□□ 0.53
SYNE3-204ENST00000555759 BNC2Q6ZN30 1099 aaPredicted RBP18.33■□□□□ 0.53
SYNE3-204ENST00000555759 LPCAT2Q7L5N7 544 aa18.33■□□□□ 0.53
SYNE3-204ENST00000555759 DHX35Q9H5Z1 703 aaKnown RBP18.33■□□□□ 0.53
SYNE3-204ENST00000555759 PCDHB2Q9Y5E7 798 aa18.33■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms