RNA–Protein interactions for RNA: ENST00000553491.5

ATXN3-220, Transcript of ataxin 3, humanhuman

TSL 1 (best)

Gene ATXN3, Length 857 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATXN3-220ENST00000553491 LAMA4Q16363 1823 aa5.52□□□□□ -1.53
ATXN3-220ENST00000553491 SMCHD1A6NHR9 2005 aa5.52□□□□□ -1.53
ATXN3-220ENST00000553491 ZSWIM8A7E2V4 1837 aa5.51□□□□□ -1.53
ATXN3-220ENST00000553491 SLC12A8A0AV02 714 aa5.51□□□□□ -1.53
ATXN3-220ENST00000553491 ALG1L2C9J202 215 aa5.51□□□□□ -1.53
ATXN3-220ENST00000553491 KRIT1O00522 736 aa5.51□□□□□ -1.53
ATXN3-220ENST00000553491 GPAA1O43292 621 aa5.51□□□□□ -1.53
ATXN3-220ENST00000553491 FKBP9O95302 570 aa5.51□□□□□ -1.53
ATXN3-220ENST00000553491 GH2P01242 217 aa5.51□□□□□ -1.53
ATXN3-220ENST00000553491 SLC3A2P08195 630 aaKnown RBP5.51□□□□□ -1.53
ATXN3-220ENST00000553491 HSPA8P11142 646 aaKnown RBP5.51□□□□□ -1.53
ATXN3-220ENST00000553491 LSSP48449 732 aa5.51□□□□□ -1.53
ATXN3-220ENST00000553491 ITGA1P56199 1179 aa5.51□□□□□ -1.53
ATXN3-220ENST00000553491 PPIL2Q13356 520 aa5.51□□□□□ -1.53
ATXN3-220ENST00000553491 MCMDC2Q4G0Z9 681 aa5.51□□□□□ -1.53
ATXN3-220ENST00000553491 RRP12Q5JTH9 1297 aaKnown RBP5.51□□□□□ -1.53
ATXN3-220ENST00000553491 PRR31Q5SQ13 230 aa5.51□□□□□ -1.53
ATXN3-220ENST00000553491 RNF219Q5W0B1 726 aaPredicted RBP5.51□□□□□ -1.53
ATXN3-220ENST00000553491 CTR9Q6PD62 1173 aa5.51□□□□□ -1.53
ATXN3-220ENST00000553491 CD300LDQ6UXZ3 194 aa5.51□□□□□ -1.53
ATXN3-220ENST00000553491 FKBP9P1Q75LS8 142 aa5.51□□□□□ -1.53
ATXN3-220ENST00000553491 SKAP1Q86WV1 359 aa5.51□□□□□ -1.53
ATXN3-220ENST00000553491 NOSTRINQ8IVI9 506 aa5.51□□□□□ -1.53
ATXN3-220ENST00000553491 RBM12BQ8IXT5 1001 aaKnown RBP5.51□□□□□ -1.53
ATXN3-220ENST00000553491 ZNF444Q8N0Y2 327 aaPredicted RBP5.51□□□□□ -1.53
ATXN3-220ENST00000553491 CARFQ8N187 725 aa5.51□□□□□ -1.53
ATXN3-220ENST00000553491 ZBTB8AQ96BR9 441 aa5.51□□□□□ -1.53
ATXN3-220ENST00000553491 FAM227BQ96M60 508 aa5.51□□□□□ -1.53
ATXN3-220ENST00000553491 CD244Q9BZW8 370 aa5.51□□□□□ -1.53
ATXN3-220ENST00000553491 NAPBQ9H115 298 aa5.51□□□□□ -1.53
ATXN3-220ENST00000553491 AS3MTQ9HBK9 375 aa5.51□□□□□ -1.53
ATXN3-220ENST00000553491 EMC7Q9NPA0 242 aa5.51□□□□□ -1.53
ATXN3-220ENST00000553491 OXSMQ9NWU1 459 aa5.51□□□□□ -1.53
ATXN3-220ENST00000553491 SLC5A4Q9NY91 659 aa5.51□□□□□ -1.53
ATXN3-220ENST00000553491 TMOD4Q9NZQ9 345 aa5.51□□□□□ -1.53
ATXN3-220ENST00000553491 HERC5Q9UII4 1024 aaKnown RBP5.51□□□□□ -1.53
ATXN3-220ENST00000553491 ZNF112Q9UJU3 913 aa5.51□□□□□ -1.53
ATXN3-220ENST00000553491 SRPK3Q9UPE1 567 aa5.51□□□□□ -1.53
ATXN3-220ENST00000553491 BAZ2BQ9UIF8 2168 aaKnown RBP5.5□□□□□ -1.53
ATXN3-220ENST00000553491 PLXNA1Q9UIW2 1896 aa5.5□□□□□ -1.53
ATXN3-220ENST00000553491 BTBD19C9JJ37 291 aa5.5□□□□□ -1.53
ATXN3-220ENST00000553491 SMIM22K7EJ46 135 aa5.5□□□□□ -1.53
ATXN3-220ENST00000553491 PDHXO00330 501 aa5.5□□□□□ -1.53
ATXN3-220ENST00000553491 DVL2O14641 736 aa5.5□□□□□ -1.53
ATXN3-220ENST00000553491 SLC27A2O14975 620 aa5.5□□□□□ -1.53
ATXN3-220ENST00000553491 CA12O43570 354 aa5.5□□□□□ -1.53
ATXN3-220ENST00000553491 KATNA1O75449 491 aa5.5□□□□□ -1.53
ATXN3-220ENST00000553491 KRT37O76014 449 aa5.5□□□□□ -1.53
ATXN3-220ENST00000553491 LRG1P02750 347 aa5.5□□□□□ -1.53
ATXN3-220ENST00000553491 ASNSP08243 561 aa5.5□□□□□ -1.53
ATXN3-220ENST00000553491 GNAT2P19087 354 aa5.5□□□□□ -1.53
ATXN3-220ENST00000553491 THBS2P35442 1172 aa5.5□□□□□ -1.53
ATXN3-220ENST00000553491 STAT5AP42229 794 aa5.5□□□□□ -1.53
ATXN3-220ENST00000553491 KCNC1P48547 511 aa5.5□□□□□ -1.53
ATXN3-220ENST00000553491 HMGCS2P54868 508 aa5.5□□□□□ -1.53
ATXN3-220ENST00000553491 TMPRSS15P98073 1019 aa5.5□□□□□ -1.53
ATXN3-220ENST00000553491 EXOSC10Q01780 885 aaKnown RBP5.5□□□□□ -1.53
ATXN3-220ENST00000553491 ADAM9Q13443 819 aa5.5□□□□□ -1.53
ATXN3-220ENST00000553491 SMAD4Q13485 552 aaKnown RBP5.5□□□□□ -1.53
ATXN3-220ENST00000553491 RRP1BQ14684 758 aaKnown RBP5.5□□□□□ -1.53
ATXN3-220ENST00000553491 KIF22Q14807 665 aa5.5□□□□□ -1.53
ATXN3-220ENST00000553491 SEPT2Q15019 361 aa5.5□□□□□ -1.53
ATXN3-220ENST00000553491 SEC23AQ15436 765 aa5.5□□□□□ -1.53
ATXN3-220ENST00000553491 SHROOM1Q2M3G4 852 aaPredicted RBP5.5□□□□□ -1.53
ATXN3-220ENST00000553491 TTC22Q5TAA0 569 aa5.5□□□□□ -1.53
ATXN3-220ENST00000553491 C12orf60Q5U649 245 aa5.5□□□□□ -1.53
ATXN3-220ENST00000553491 TMED8Q6PL24 325 aaPredicted RBP5.5□□□□□ -1.53
ATXN3-220ENST00000553491 CENPQQ7L2Z9 268 aaPredicted RBP5.5□□□□□ -1.53
ATXN3-220ENST00000553491 FASTKD5Q7L8L6 764 aaKnown RBP5.5□□□□□ -1.53
ATXN3-220ENST00000553491 CCAR1Q8IX12 1150 aaKnown RBP5.5□□□□□ -1.53
ATXN3-220ENST00000553491 KYQ8NBH2 561 aa5.5□□□□□ -1.53
ATXN3-220ENST00000553491 SLC44A5Q8NCS7 719 aa5.5□□□□□ -1.53
ATXN3-220ENST00000553491 COG1Q8WTW3 980 aa5.5□□□□□ -1.53
ATXN3-220ENST00000553491 BRI3BPQ8WY22 251 aa5.5□□□□□ -1.53
ATXN3-220ENST00000553491 PTPN18Q99952 460 aa5.5□□□□□ -1.53
ATXN3-220ENST00000553491 SPATA25Q9BR10 227 aa5.5□□□□□ -1.53
ATXN3-220ENST00000553491 BOCQ9BWV1 1114 aa5.5□□□□□ -1.53
ATXN3-220ENST00000553491 TRIM8Q9BZR9 551 aa5.5□□□□□ -1.53
ATXN3-220ENST00000553491 R3HDMLQ9H3Y0 253 aa5.5□□□□□ -1.53
ATXN3-220ENST00000553491 SMOC1Q9H4F8 434 aa5.5□□□□□ -1.53
ATXN3-220ENST00000553491 INCENPQ9NQS7 918 aa5.5□□□□□ -1.53
ATXN3-220ENST00000553491 HELLSQ9NRZ9 838 aa5.5□□□□□ -1.53
ATXN3-220ENST00000553491 HSPBP1Q9NZL4 362 aa5.5□□□□□ -1.53
ATXN3-220ENST00000553491 ASH2LQ9UBL3 628 aa5.5□□□□□ -1.53
ATXN3-220ENST00000553491 CPA4Q9UI42 421 aa5.5□□□□□ -1.53
ATXN3-220ENST00000553491 APOBEC2Q9Y235 224 aaKnown RBP5.5□□□□□ -1.53
ATXN3-220ENST00000553491 TELO2Q9Y4R8 837 aa5.5□□□□□ -1.53
ATXN3-220ENST00000553491 DDX60LQ5H9U9 1706 aaKnown RBP5.5□□□□□ -1.53
ATXN3-220ENST00000553491 MYH7BA7E2Y1 1941 aa5.5□□□□□ -1.53
ATXN3-220ENST00000553491 A0A0D9SFI3 127 aa5.49□□□□□ -1.53
ATXN3-220ENST00000553491 HIP1O00291 1037 aa5.49□□□□□ -1.53
ATXN3-220ENST00000553491 CXCL11O14625 94 aa5.49□□□□□ -1.53
ATXN3-220ENST00000553491 TGM5O43548 720 aa5.49□□□□□ -1.53
ATXN3-220ENST00000553491 NOBOXO60393 691 aa5.49□□□□□ -1.53
ATXN3-220ENST00000553491 RANBP6O60518 1105 aaKnown RBP5.49□□□□□ -1.53
ATXN3-220ENST00000553491 PRDM1O75626 825 aa5.49□□□□□ -1.53
ATXN3-220ENST00000553491 LTFP02788 710 aa5.49□□□□□ -1.53
ATXN3-220ENST00000553491 KPNA1P52294 538 aaPredicted RBP5.49□□□□□ -1.53
ATXN3-220ENST00000553491 EPHA5P54756 1037 aa5.49□□□□□ -1.53
ATXN3-220ENST00000553491 HAND2P61296 217 aa5.49□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 176 ms