RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 CAV1Q03135 178 aa5.75□□□□□ -1.49
LIMA1-212ENST00000552491 CCDC15Q0P6D6 951 aa5.75□□□□□ -1.49
LIMA1-212ENST00000552491 STRN3Q13033 797 aa5.75□□□□□ -1.49
LIMA1-212ENST00000552491 SLC1A5Q15758 541 aa5.75□□□□□ -1.49
LIMA1-212ENST00000552491 ZYXQ15942 572 aaKnown RBP5.75□□□□□ -1.49
LIMA1-212ENST00000552491 PKN2Q16513 984 aaKnown RBP5.75□□□□□ -1.49
LIMA1-212ENST00000552491 DACT2Q5SW24 774 aa5.75□□□□□ -1.49
LIMA1-212ENST00000552491 PLA2G4FQ68DD2 849 aa5.75□□□□□ -1.49
LIMA1-212ENST00000552491 KRT39Q6A163 491 aa5.75□□□□□ -1.49
LIMA1-212ENST00000552491 ARHGEF18Q6ZSZ5 1173 aa5.75□□□□□ -1.49
LIMA1-212ENST00000552491 SV2AQ7L0J3 742 aa5.75□□□□□ -1.49
LIMA1-212ENST00000552491 MIER3Q7Z3K6 550 aa5.75□□□□□ -1.49
LIMA1-212ENST00000552491 C4orf33Q8N1A6 199 aa5.75□□□□□ -1.49
LIMA1-212ENST00000552491 FAM13CQ8NE31 585 aa5.75□□□□□ -1.49
LIMA1-212ENST00000552491 BSNDQ8WZ55 320 aa5.75□□□□□ -1.49
LIMA1-212ENST00000552491 GRAMD1AQ96CP6 724 aa5.75□□□□□ -1.49
LIMA1-212ENST00000552491 PRMT6Q96LA8 375 aaPredicted RBP5.75□□□□□ -1.49
LIMA1-212ENST00000552491 RBM15Q96T37 977 aaKnown RBP eCLIP5.75□□□□□ -1.49
LIMA1-212ENST00000552491 MXRA8Q9BRK3 442 aa5.75□□□□□ -1.49
LIMA1-212ENST00000552491 GLIS2Q9BZE0 524 aaPredicted RBP5.75□□□□□ -1.49
LIMA1-212ENST00000552491 RANBP17Q9H2T7 1088 aaKnown RBP5.75□□□□□ -1.49
LIMA1-212ENST00000552491 KIAA1586Q9HCI6 787 aa5.75□□□□□ -1.49
LIMA1-212ENST00000552491 NKIRAS1Q9NYS0 192 aa5.75□□□□□ -1.49
LIMA1-212ENST00000552491 PHTF1Q9UMS5 762 aa5.75□□□□□ -1.49
LIMA1-212ENST00000552491 MYH9P35579 1960 aaKnown RBP5.75□□□□□ -1.49
LIMA1-212ENST00000552491 A0A1W2PPM1 405 aa5.75□□□□□ -1.49
LIMA1-212ENST00000552491 MAGEB2O15479 319 aa5.75□□□□□ -1.49
LIMA1-212ENST00000552491 BANF1O75531 89 aa5.75□□□□□ -1.49
LIMA1-212ENST00000552491 P4HBP07237 508 aaKnown RBP5.75□□□□□ -1.49
LIMA1-212ENST00000552491 LINGO3P0C6S8 592 aa5.75□□□□□ -1.49
LIMA1-212ENST00000552491 MAPTP10636 758 aaKnown RBP5.75□□□□□ -1.49
LIMA1-212ENST00000552491 KRT10P13645 584 aa5.75□□□□□ -1.49
LIMA1-212ENST00000552491 KRT5P13647 590 aa5.75□□□□□ -1.49
LIMA1-212ENST00000552491 CNGA1P29973 690 aa5.75□□□□□ -1.49
LIMA1-212ENST00000552491 MAN1A1P33908 653 aa5.75□□□□□ -1.49
LIMA1-212ENST00000552491 RPA3P35244 121 aaPredicted RBP5.75□□□□□ -1.49
LIMA1-212ENST00000552491 GJC1P36383 396 aa5.75□□□□□ -1.49
LIMA1-212ENST00000552491 POLGP54098 1239 aaPredicted RBP5.75□□□□□ -1.49
LIMA1-212ENST00000552491 YARSP54577 528 aaKnown RBP5.75□□□□□ -1.49
LIMA1-212ENST00000552491 WNT7BP56706 349 aa5.75□□□□□ -1.49
LIMA1-212ENST00000552491 LACTBP83111 547 aaPredicted RBP5.75□□□□□ -1.49
LIMA1-212ENST00000552491 ATP11AP98196 1134 aa5.75□□□□□ -1.49
LIMA1-212ENST00000552491 GRIK3Q13003 919 aa5.75□□□□□ -1.49
LIMA1-212ENST00000552491 TRAF1Q13077 416 aa5.75□□□□□ -1.49
LIMA1-212ENST00000552491 BLMHQ13867 455 aa5.75□□□□□ -1.49
LIMA1-212ENST00000552491 P3H1Q32P28 736 aa5.75□□□□□ -1.49
LIMA1-212ENST00000552491 PLEKHG4Q58EX7 1191 aa5.75□□□□□ -1.49
LIMA1-212ENST00000552491 PCNX4Q63HM2 1172 aa5.75□□□□□ -1.49
LIMA1-212ENST00000552491 LMBRD2Q68DH5 695 aaPredicted RBP5.75□□□□□ -1.49
LIMA1-212ENST00000552491 SCARA3Q6AZY7 606 aa5.75□□□□□ -1.49
LIMA1-212ENST00000552491 CAPN12Q6ZSI9 719 aa5.75□□□□□ -1.49
LIMA1-212ENST00000552491 FBXL13Q8NEE6 735 aa5.75□□□□□ -1.49
LIMA1-212ENST00000552491 SUPT20HQ8NEM7 779 aa5.75□□□□□ -1.49
LIMA1-212ENST00000552491 ANKK1Q8NFD2 765 aa5.75□□□□□ -1.49
LIMA1-212ENST00000552491 TTC8Q8TAM2 541 aa5.75□□□□□ -1.49
LIMA1-212ENST00000552491 GRK7Q8WTQ7 553 aa5.75□□□□□ -1.49
LIMA1-212ENST00000552491 C10orf82Q8WW14 230 aa5.75□□□□□ -1.49
LIMA1-212ENST00000552491 MAIP1Q8WWC4 291 aa5.75□□□□□ -1.49
LIMA1-212ENST00000552491 ZNF516Q92618 1163 aa5.75□□□□□ -1.49
LIMA1-212ENST00000552491 MRRFQ96E11 262 aaKnown RBP5.75□□□□□ -1.49
LIMA1-212ENST00000552491 AGBL1Q96MI9 1066 aa5.75□□□□□ -1.49
LIMA1-212ENST00000552491 NT5C1BQ96P26 610 aa5.75□□□□□ -1.49
LIMA1-212ENST00000552491 LRMDAQ9H2I8 198 aa5.75□□□□□ -1.49
LIMA1-212ENST00000552491 C12orf65Q9H3J6 166 aaKnown RBP5.75□□□□□ -1.49
LIMA1-212ENST00000552491 TMEM8AQ9HCN3 771 aa5.75□□□□□ -1.49
LIMA1-212ENST00000552491 RAB20Q9NX57 234 aa5.75□□□□□ -1.49
LIMA1-212ENST00000552491 ACTL7BQ9Y614 415 aa5.75□□□□□ -1.49
LIMA1-212ENST00000552491 ASTN2O75129 1339 aaPredicted RBP5.75□□□□□ -1.49
LIMA1-212ENST00000552491 POC1B-GALNT4F8VUJ3 575 aa5.74□□□□□ -1.49
LIMA1-212ENST00000552491 PI4K2BG5E9Z4 385 aa5.74□□□□□ -1.49
LIMA1-212ENST00000552491 NFIBO00712 420 aa5.74□□□□□ -1.49
LIMA1-212ENST00000552491 PLSCR1O15162 318 aa5.74□□□□□ -1.49
LIMA1-212ENST00000552491 MAPK13O15264 365 aa5.74□□□□□ -1.49
LIMA1-212ENST00000552491 WFS1O76024 890 aa5.74□□□□□ -1.49
LIMA1-212ENST00000552491 GAS8O95995 478 aa5.74□□□□□ -1.49
LIMA1-212ENST00000552491 TPBGLP0DKB5 382 aa5.74□□□□□ -1.49
LIMA1-212ENST00000552491 EPHB2P29323 1055 aa5.74□□□□□ -1.49
LIMA1-212ENST00000552491 YWHABP31946 246 aaKnown RBP5.74□□□□□ -1.49
LIMA1-212ENST00000552491 TUBP50607 506 aa5.74□□□□□ -1.49
LIMA1-212ENST00000552491 NCKAP1LP55160 1127 aa5.74□□□□□ -1.49
LIMA1-212ENST00000552491 MRPS9P82933 396 aaKnown RBP5.74□□□□□ -1.49
LIMA1-212ENST00000552491 GAD2Q05329 585 aa5.74□□□□□ -1.49
LIMA1-212ENST00000552491 ALCAMQ13740 583 aa5.74□□□□□ -1.49
LIMA1-212ENST00000552491 STAT4Q14765 748 aa5.74□□□□□ -1.49
LIMA1-212ENST00000552491 CCNG2Q16589 344 aa5.74□□□□□ -1.49
LIMA1-212ENST00000552491 CCDC142Q17RM4 750 aa5.74□□□□□ -1.49
LIMA1-212ENST00000552491 PROX2Q3B8N5 592 aa5.74□□□□□ -1.49
LIMA1-212ENST00000552491 SPOPLQ6IQ16 392 aa5.74□□□□□ -1.49
LIMA1-212ENST00000552491 ZNF449Q6P9G9 518 aa5.74□□□□□ -1.49
LIMA1-212ENST00000552491 PPP1R21Q6ZMI0 780 aa5.74□□□□□ -1.49
LIMA1-212ENST00000552491 LDHDQ86WU2 507 aa5.74□□□□□ -1.49
LIMA1-212ENST00000552491 VSIG1Q86XK7 387 aa5.74□□□□□ -1.49
LIMA1-212ENST00000552491 RELL1Q8IUW5 271 aa5.74□□□□□ -1.49
LIMA1-212ENST00000552491 PASD1Q8IV76 773 aa5.74□□□□□ -1.49
LIMA1-212ENST00000552491 TMEM161BQ8NDZ6 487 aa5.74□□□□□ -1.49
LIMA1-212ENST00000552491 MICAL1Q8TDZ2 1067 aa5.74□□□□□ -1.49
LIMA1-212ENST00000552491 NAF1Q96HR8 494 aaKnown RBP5.74□□□□□ -1.49
LIMA1-212ENST00000552491 CSRNP1Q96S65 589 aa5.74□□□□□ -1.49
LIMA1-212ENST00000552491 RIT2Q99578 217 aa5.74□□□□□ -1.49
LIMA1-212ENST00000552491 CCDC77Q9BR77 488 aa5.74□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms