RNA–Protein interactions for RNA: ENST00000550406.1

RAB5C-206, Transcript of RAB5C, member RAS oncogene family, humanhuman

TSL 3

Gene RAB5C, Length 500 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAB5C-206ENST00000550406 FAM161BQ96MY7 647 aa14.05□□□□□ -0.16
RAB5C-206ENST00000550406 ZBP1Q9H171 429 aa14.05□□□□□ -0.16
RAB5C-206ENST00000550406 CHST7Q9NS84 486 aa14.05□□□□□ -0.16
RAB5C-206ENST00000550406 PCDHGC5Q9Y5F6 944 aa14.05□□□□□ -0.16
RAB5C-206ENST00000550406 UTP18Q9Y5J1 556 aaKnown RBP eCLIP14.05□□□□□ -0.16
RAB5C-206ENST00000550406 PLXNA3P51805 1871 aa14.04□□□□□ -0.16
RAB5C-206ENST00000550406 LRRC10BA6NIK2 292 aa14.04□□□□□ -0.16
RAB5C-206ENST00000550406 SMTNL1A8MU46 457 aa14.04□□□□□ -0.16
RAB5C-206ENST00000550406 LILRB3O75022 631 aa14.04□□□□□ -0.16
RAB5C-206ENST00000550406 PHACTR2O75167 634 aa14.04□□□□□ -0.16
RAB5C-206ENST00000550406 STAU1O95793 577 aaKnown RBP14.04□□□□□ -0.16
RAB5C-206ENST00000550406 CAVIN2O95810 425 aa14.04□□□□□ -0.16
RAB5C-206ENST00000550406 SOD2P04179 222 aa14.04□□□□□ -0.16
RAB5C-206ENST00000550406 FGFR3P22607 806 aa14.04□□□□□ -0.16
RAB5C-206ENST00000550406 EEF1GP26641 437 aaKnown RBP14.04□□□□□ -0.16
RAB5C-206ENST00000550406 TKTP29401 623 aaKnown RBP14.04□□□□□ -0.16
RAB5C-206ENST00000550406 IRS1P35568 1242 aa14.04□□□□□ -0.16
RAB5C-206ENST00000550406 TAF6P49848 677 aa14.04□□□□□ -0.16
RAB5C-206ENST00000550406 MXI1P50539 228 aa14.04□□□□□ -0.16
RAB5C-206ENST00000550406 KRT17Q04695 432 aa14.04□□□□□ -0.16
RAB5C-206ENST00000550406 UBE3AQ05086 875 aa14.04□□□□□ -0.16
RAB5C-206ENST00000550406 ADGRE1Q14246 886 aa14.04□□□□□ -0.16
RAB5C-206ENST00000550406 MAN2A1Q16706 1144 aa14.04□□□□□ -0.16
RAB5C-206ENST00000550406 RTP2Q5QGT7 225 aa14.04□□□□□ -0.16
RAB5C-206ENST00000550406 FAM171A1Q5VUB5 890 aa14.04□□□□□ -0.16
RAB5C-206ENST00000550406 LIMS2Q7Z4I7 341 aa14.04□□□□□ -0.16
RAB5C-206ENST00000550406 LMO3Q8TAP4 145 aa14.04□□□□□ -0.16
RAB5C-206ENST00000550406 FAM200AQ8TCP9 573 aa14.04□□□□□ -0.16
RAB5C-206ENST00000550406 AUTS2Q8WXX7 1259 aa14.04□□□□□ -0.16
RAB5C-206ENST00000550406 HPDLQ96IR7 371 aa14.04□□□□□ -0.16
RAB5C-206ENST00000550406 TUBGCP2Q9BSJ2 902 aa14.04□□□□□ -0.16
RAB5C-206ENST00000550406 PI4K2AQ9BTU6 479 aa14.04□□□□□ -0.16
RAB5C-206ENST00000550406 HERC2P3Q9BVR0 1158 aa14.04□□□□□ -0.16
RAB5C-206ENST00000550406 VRTNQ9H8Y1 702 aa14.04□□□□□ -0.16
RAB5C-206ENST00000550406 APOBEC3GQ9HC16 384 aaKnown RBP14.04□□□□□ -0.16
RAB5C-206ENST00000550406 TAB2Q9NYJ8 693 aa14.04□□□□□ -0.16
RAB5C-206ENST00000550406 LIMA1Q9UHB6 759 aaKnown RBP14.04□□□□□ -0.16
RAB5C-206ENST00000550406 KPNA7A9QM74 516 aa14.03□□□□□ -0.16
RAB5C-206ENST00000550406 CYB561D2O14569 222 aa14.03□□□□□ -0.16
RAB5C-206ENST00000550406 STX10O60499 249 aa14.03□□□□□ -0.16
RAB5C-206ENST00000550406 ASS1P00966 412 aaKnown RBP14.03□□□□□ -0.16
RAB5C-206ENST00000550406 AFPP02771 609 aaKnown RBP14.03□□□□□ -0.16
RAB5C-206ENST00000550406 CTSAP10619 480 aa14.03□□□□□ -0.16
RAB5C-206ENST00000550406 TRPC3Q13507 836 aa14.03□□□□□ -0.16
RAB5C-206ENST00000550406 MRPL58Q14197 206 aaKnown RBP14.03□□□□□ -0.16
RAB5C-206ENST00000550406 SV2CQ496J9 727 aa14.03□□□□□ -0.16
RAB5C-206ENST00000550406 VWA3BQ502W6 1294 aa14.03□□□□□ -0.16
RAB5C-206ENST00000550406 SPOPLQ6IQ16 392 aa14.03□□□□□ -0.16
RAB5C-206ENST00000550406 FBXL13Q8NEE6 735 aa14.03□□□□□ -0.16
RAB5C-206ENST00000550406 TATDN2Q93075 761 aa14.03□□□□□ -0.16
RAB5C-206ENST00000550406 ZNF560Q96MR9 790 aa14.03□□□□□ -0.16
RAB5C-206ENST00000550406 GUCD1Q96NT3 240 aa14.03□□□□□ -0.16
RAB5C-206ENST00000550406 UTP3Q9NQZ2 479 aaKnown RBP eCLIP14.03□□□□□ -0.162e-6■■■■■ 96.1
RAB5C-206ENST00000550406 RAB20Q9NX57 234 aa14.03□□□□□ -0.16
RAB5C-206ENST00000550406 GDAP2Q9NXN4 497 aa14.03□□□□□ -0.16
RAB5C-206ENST00000550406 MAGEC2Q9UBF1 373 aaPredicted RBP14.03□□□□□ -0.16
RAB5C-206ENST00000550406 PCDHB8Q9UN66 801 aa14.03□□□□□ -0.16
RAB5C-206ENST00000550406 POLIQ9UNA4 740 aa14.03□□□□□ -0.16
RAB5C-206ENST00000550406 NUB1Q9Y5A7 615 aa14.03□□□□□ -0.16
RAB5C-206ENST00000550406 TIMM13Q9Y5L4 95 aaPredicted RBP14.03□□□□□ -0.16
RAB5C-206ENST00000550406 MTCL1Q9Y4B5 1905 aaKnown RBP14.03□□□□□ -0.16
RAB5C-206ENST00000550406 SF3B1O75533 1304 aaKnown RBP eCLIP14.02□□□□□ -0.178e-6■■■■■ 107
RAB5C-206ENST00000550406 BECN2A8MW95 431 aa14.02□□□□□ -0.17
RAB5C-206ENST00000550406 TBC1D4O60343 1298 aa14.02□□□□□ -0.17
RAB5C-206ENST00000550406 CSPG5O95196 566 aa14.02□□□□□ -0.17
RAB5C-206ENST00000550406 POU3F3P20264 500 aaPredicted RBP14.02□□□□□ -0.17
RAB5C-206ENST00000550406 ATICP31939 592 aa14.02□□□□□ -0.17
RAB5C-206ENST00000550406 PNPLA4P41247 253 aa14.02□□□□□ -0.17
RAB5C-206ENST00000550406 PIK3CAP42336 1068 aa14.02□□□□□ -0.17
RAB5C-206ENST00000550406 COPB1P53618 953 aaKnown RBP14.02□□□□□ -0.17
RAB5C-206ENST00000550406 MYL7Q01449 175 aa14.02□□□□□ -0.17
RAB5C-206ENST00000550406 DSG1Q02413 1049 aa14.02□□□□□ -0.17
RAB5C-206ENST00000550406 KCNMA1Q12791 1236 aa14.02□□□□□ -0.17
RAB5C-206ENST00000550406 ELAVL2Q12926 359 aaKnown RBP14.02□□□□□ -0.17
RAB5C-206ENST00000550406 SGSM1Q2NKQ1 1148 aa14.02□□□□□ -0.17
RAB5C-206ENST00000550406 USP41Q3LFD5 358 aa14.02□□□□□ -0.17
RAB5C-206ENST00000550406 DPY19L2P1Q6NXN4 242 aa14.02□□□□□ -0.17
RAB5C-206ENST00000550406 PRSS55Q6UWB4 352 aaPredicted RBP14.02□□□□□ -0.17
RAB5C-206ENST00000550406 DSTYKQ6XUX3 929 aa14.02□□□□□ -0.17
RAB5C-206ENST00000550406 PDZRN4Q6ZMN7 1036 aaPredicted RBP14.02□□□□□ -0.17
RAB5C-206ENST00000550406 EHBP1Q8NDI1 1231 aa14.02□□□□□ -0.17
RAB5C-206ENST00000550406 LNX1Q8TBB1 728 aaPredicted RBP14.02□□□□□ -0.17
RAB5C-206ENST00000550406 LMAN2LQ9H0V9 348 aa14.02□□□□□ -0.17
RAB5C-206ENST00000550406 SDCBP2Q9H190 292 aa14.02□□□□□ -0.17
RAB5C-206ENST00000550406 VPS16Q9H269 839 aa14.02□□□□□ -0.17
RAB5C-206ENST00000550406 NDST4Q9H3R1 872 aa14.02□□□□□ -0.17
RAB5C-206ENST00000550406 TLR9Q9NR96 1032 aa14.02□□□□□ -0.17
RAB5C-206ENST00000550406 MTMR10Q9NXD2 777 aa14.02□□□□□ -0.17
RAB5C-206ENST00000550406 PUF60Q9UHX1 559 aaKnown RBP14.02□□□□□ -0.17
RAB5C-206ENST00000550406 NME7Q9Y5B8 376 aa14.02□□□□□ -0.17
RAB5C-206ENST00000550406 SNX9Q9Y5X1 595 aa14.02□□□□□ -0.17
RAB5C-206ENST00000550406 TRANK1O15050 2925 aa14.02□□□□□ -0.17
RAB5C-206ENST00000550406 HIDE1A8MVS5 230 aa14.01□□□□□ -0.17
RAB5C-206ENST00000550406 SYN3O14994 580 aa14.01□□□□□ -0.17
RAB5C-206ENST00000550406 P4HA2O15460 535 aa14.01□□□□□ -0.17
RAB5C-206ENST00000550406 TRAPPC3O43617 180 aa14.01□□□□□ -0.17
RAB5C-206ENST00000550406 CXCL14O95715 111 aa14.01□□□□□ -0.17
RAB5C-206ENST00000550406 CYP11A1P05108 521 aa14.01□□□□□ -0.17
RAB5C-206ENST00000550406 PRKCSHP14314 528 aaPredicted RBP14.01□□□□□ -0.17
RAB5C-206ENST00000550406 TYMPP19971 482 aa14.01□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms