RNA–Protein interactions for RNA: ENST00000541416.5

SNHG1-216, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 2

Gene SNHG1, Length 996 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-216ENST00000541416 PCDHB8Q9UN66 801 aa13.39□□□□□ -0.27
SNHG1-216ENST00000541416 KIAA1024Q9UPX6 916 aa13.39□□□□□ -0.27
SNHG1-216ENST00000541416 DYNC1LI1Q9Y6G9 523 aaKnown RBP13.39□□□□□ -0.27
SNHG1-216ENST00000541416 F5P12259 2224 aa13.39□□□□□ -0.27
SNHG1-216ENST00000541416 TPRP12270 2363 aaKnown RBP13.38□□□□□ -0.27
SNHG1-216ENST00000541416 SHISA7A6NL88 538 aa13.38□□□□□ -0.27
SNHG1-216ENST00000541416 XPOTO43592 962 aaKnown RBP13.38□□□□□ -0.27
SNHG1-216ENST00000541416 JAK2O60674 1132 aa13.38□□□□□ -0.27
SNHG1-216ENST00000541416 PAPSS2O95340 614 aaPredicted RBP13.38□□□□□ -0.27
SNHG1-216ENST00000541416 HARSP12081 509 aaKnown RBP13.38□□□□□ -0.27
SNHG1-216ENST00000541416 SMTNP53814 917 aa13.38□□□□□ -0.27
SNHG1-216ENST00000541416 SATB1Q01826 763 aa13.38□□□□□ -0.27
SNHG1-216ENST00000541416 PTGDRQ13258 359 aa13.38□□□□□ -0.27
SNHG1-216ENST00000541416 TEAD2Q15562 447 aa13.38□□□□□ -0.27
SNHG1-216ENST00000541416 TTC38Q5R3I4 469 aa13.38□□□□□ -0.27
SNHG1-216ENST00000541416 KRT79Q5XKE5 535 aa13.38□□□□□ -0.27
SNHG1-216ENST00000541416 IL31Q6EBC2 164 aa13.38□□□□□ -0.27
SNHG1-216ENST00000541416 PRR23CQ6ZRP0 262 aa13.38□□□□□ -0.27
SNHG1-216ENST00000541416 CEP68Q76N32 757 aa13.38□□□□□ -0.27
SNHG1-216ENST00000541416 RALGPS2Q86X27 583 aaPredicted RBP13.38□□□□□ -0.27
SNHG1-216ENST00000541416 SYNPOQ8N3V7 929 aa13.38□□□□□ -0.27
SNHG1-216ENST00000541416 SNX29Q8TEQ0 813 aa13.38□□□□□ -0.27
SNHG1-216ENST00000541416 C8orf76Q96K31 380 aa13.38□□□□□ -0.27
SNHG1-216ENST00000541416 ZSWIM3Q96MP5 696 aa13.38□□□□□ -0.27
SNHG1-216ENST00000541416 TARS2Q9BW92 718 aaKnown RBP13.38□□□□□ -0.27
SNHG1-216ENST00000541416 CEP72Q9P209 647 aa13.38□□□□□ -0.27
SNHG1-216ENST00000541416 ARHGAP28Q9P2N2 729 aa13.38□□□□□ -0.27
SNHG1-216ENST00000541416 ASB3Q9Y575 518 aa13.38□□□□□ -0.27
SNHG1-216ENST00000541416 ACACBO00763 2458 aa13.37□□□□□ -0.27
SNHG1-216ENST00000541416 KMT2BQ9UMN6 2715 aaPredicted RBP13.37□□□□□ -0.27
SNHG1-216ENST00000541416 OR6C75A6NL08 312 aa13.37□□□□□ -0.27
SNHG1-216ENST00000541416 HIP1RO75146 1068 aa13.37□□□□□ -0.27
SNHG1-216ENST00000541416 TOM1L1O75674 476 aa13.37□□□□□ -0.27
SNHG1-216ENST00000541416 PROZP22891 400 aa13.37□□□□□ -0.27
SNHG1-216ENST00000541416 MATR3P43243 847 aaKnown RBP eCLIP13.37□□□□□ -0.27
SNHG1-216ENST00000541416 GUCY1B3Q02153 619 aa13.37□□□□□ -0.27
SNHG1-216ENST00000541416 FCHO2Q0JRZ9 810 aa13.37□□□□□ -0.27
SNHG1-216ENST00000541416 NOLC1Q14978 699 aaKnown RBP eCLIP13.37□□□□□ -0.274e-19■■■■■ 52.1
SNHG1-216ENST00000541416 PTPAQ15257 358 aa13.37□□□□□ -0.27
SNHG1-216ENST00000541416 ARHGAP29Q52LW3 1261 aa13.37□□□□□ -0.27
SNHG1-216ENST00000541416 ARHGAP15Q53QZ3 475 aa13.37□□□□□ -0.27
SNHG1-216ENST00000541416 POTEHQ6S545 545 aa13.37□□□□□ -0.27
SNHG1-216ENST00000541416 RNF19BQ6ZMZ0 732 aa13.37□□□□□ -0.27
SNHG1-216ENST00000541416 C18orf25Q96B23 403 aaPredicted RBP13.37□□□□□ -0.27
SNHG1-216ENST00000541416 PLEKHA5Q9HAU0 1116 aa13.37□□□□□ -0.27
SNHG1-216ENST00000541416 POLD4Q9HCU8 107 aa13.37□□□□□ -0.27
SNHG1-216ENST00000541416 ANKFY1Q9P2R3 1169 aa13.37□□□□□ -0.27
SNHG1-216ENST00000541416 YIPF1Q9Y548 306 aa13.37□□□□□ -0.27
SNHG1-216ENST00000541416 RALGAPA1Q6GYQ0 2036 aa13.37□□□□□ -0.27
SNHG1-216ENST00000541416 PDCD11Q14690 1871 aaKnown RBP13.36□□□□□ -0.27
SNHG1-216ENST00000541416 A0A1W2PRU2 124 aa13.36□□□□□ -0.27
SNHG1-216ENST00000541416 SLC38A8A6NNN8 435 aa13.36□□□□□ -0.27
SNHG1-216ENST00000541416 CHURC1-FNTBB4DL54 471 aa13.36□□□□□ -0.27
SNHG1-216ENST00000541416 SPECC1L-ADORA2AF8WAN1 911 aa13.36□□□□□ -0.27
SNHG1-216ENST00000541416 H0YCG3 227 aa13.36□□□□□ -0.27
SNHG1-216ENST00000541416 ARNTLO00327 626 aa13.36□□□□□ -0.27
SNHG1-216ENST00000541416 CLDN3O15551 220 aa13.36□□□□□ -0.27
SNHG1-216ENST00000541416 OAZ2O95190 189 aa13.36□□□□□ -0.27
SNHG1-216ENST00000541416 GJA1P17302 382 aa13.36□□□□□ -0.27
SNHG1-216ENST00000541416 PAX3P23760 479 aa13.36□□□□□ -0.27
SNHG1-216ENST00000541416 FNTBP49356 437 aa13.36□□□□□ -0.27
SNHG1-216ENST00000541416 NEK4P51957 841 aa13.36□□□□□ -0.27
SNHG1-216ENST00000541416 PLCB2Q00722 1185 aa13.36□□□□□ -0.27
SNHG1-216ENST00000541416 KYAT1Q16773 422 aa13.36□□□□□ -0.27
SNHG1-216ENST00000541416 ITIH5Q86UX2 942 aa13.36□□□□□ -0.27
SNHG1-216ENST00000541416 C12orf50Q8NA57 414 aaPredicted RBP13.36□□□□□ -0.27
SNHG1-216ENST00000541416 BEST2Q8NFU1 509 aa13.36□□□□□ -0.27
SNHG1-216ENST00000541416 SHKBP1Q8TBC3 707 aa13.36□□□□□ -0.27
SNHG1-216ENST00000541416 THG1LQ9NWX6 298 aaKnown RBP13.36□□□□□ -0.27
SNHG1-216ENST00000541416 OBP2AQ9NY56 170 aa13.36□□□□□ -0.27
SNHG1-216ENST00000541416 SPTBN2O15020 2390 aa13.36□□□□□ -0.27
SNHG1-216ENST00000541416 COL4A2P08572 1712 aa13.36□□□□□ -0.27
SNHG1-216ENST00000541416 MYBPHLA2RUH7 354 aa13.35□□□□□ -0.27
SNHG1-216ENST00000541416 M0QZQ0 153 aa13.35□□□□□ -0.27
SNHG1-216ENST00000541416 LAD1O00515 517 aa13.35□□□□□ -0.27
SNHG1-216ENST00000541416 HRO43593 1189 aa13.35□□□□□ -0.27
SNHG1-216ENST00000541416 MOSPD3O75425 235 aa13.35□□□□□ -0.27
SNHG1-216ENST00000541416 LARGE1O95461 756 aa13.35□□□□□ -0.27
SNHG1-216ENST00000541416 KCNA4P22459 653 aa13.35□□□□□ -0.27
SNHG1-216ENST00000541416 HOXA6P31267 233 aa13.35□□□□□ -0.27
SNHG1-216ENST00000541416 CTHP32929 405 aa13.35□□□□□ -0.27
SNHG1-216ENST00000541416 GPR17Q13304 367 aa13.35□□□□□ -0.27
SNHG1-216ENST00000541416 MYBPC2Q14324 1141 aa13.35□□□□□ -0.27
SNHG1-216ENST00000541416 VEPH1Q14D04 833 aa13.35□□□□□ -0.27
SNHG1-216ENST00000541416 AASDHQ4L235 1098 aaPredicted RBP13.35□□□□□ -0.27
SNHG1-216ENST00000541416 HEATR6Q6AI08 1181 aaKnown RBP13.35□□□□□ -0.27
SNHG1-216ENST00000541416 ARMCX5Q6P1M9 558 aa13.35□□□□□ -0.27
SNHG1-216ENST00000541416 ZPBP2Q6X784 338 aa13.35□□□□□ -0.27
SNHG1-216ENST00000541416 DSTYKQ6XUX3 929 aa13.35□□□□□ -0.27
SNHG1-216ENST00000541416 ARID3BQ8IVW6 561 aaPredicted RBP13.35□□□□□ -0.27
SNHG1-216ENST00000541416 LOXL4Q96JB6 756 aa13.35□□□□□ -0.27
SNHG1-216ENST00000541416 GCNAQ96QF7 691 aa13.35□□□□□ -0.27
SNHG1-216ENST00000541416 TSPAN18Q96SJ8 248 aa13.35□□□□□ -0.27
SNHG1-216ENST00000541416 NTPCRQ9BSD7 190 aaKnown RBP13.35□□□□□ -0.27
SNHG1-216ENST00000541416 ZMYM5Q9UJ78 669 aa13.35□□□□□ -0.27
SNHG1-216ENST00000541416 UBQLN1Q9UMX0 589 aaKnown RBP13.35□□□□□ -0.27
SNHG1-216ENST00000541416 SLC16A4O15374 487 aa13.34□□□□□ -0.27
SNHG1-216ENST00000541416 ATG13O75143 517 aa13.34□□□□□ -0.27
SNHG1-216ENST00000541416 CLTAP09496 248 aa13.34□□□□□ -0.27
SNHG1-216ENST00000541416 CYP3A5P20815 502 aa13.34□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms