RNA–Protein interactions for RNA: ENST00000539504.5

SYNE1-237, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,768 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-237ENST00000539504 LINGO3P0C6S8 592 aa11.91□□□□□ -0.5
SYNE1-237ENST00000539504 ADRA2BP18089 450 aa11.91□□□□□ -0.5
SYNE1-237ENST00000539504 KRT4P19013 534 aa11.91□□□□□ -0.5
SYNE1-237ENST00000539504 MUTP22033 750 aa11.91□□□□□ -0.5
SYNE1-237ENST00000539504 MARK3P27448 753 aa11.91□□□□□ -0.5
SYNE1-237ENST00000539504 QARSP47897 775 aaKnown RBP11.91□□□□□ -0.5
SYNE1-237ENST00000539504 PDK4Q16654 411 aa11.91□□□□□ -0.5
SYNE1-237ENST00000539504 WDR44Q5JSH3 913 aa11.91□□□□□ -0.5
SYNE1-237ENST00000539504 SCYL3Q8IZE3 742 aa11.91□□□□□ -0.5
SYNE1-237ENST00000539504 ZCCHC9Q8N567 271 aaKnown RBP11.91□□□□□ -0.5
SYNE1-237ENST00000539504 GLIS1Q8NBF1 620 aa11.91□□□□□ -0.5
SYNE1-237ENST00000539504 KCNH7Q9NS40 1196 aa11.91□□□□□ -0.5
SYNE1-237ENST00000539504 KIF3CO14782 793 aa11.91□□□□□ -0.5
SYNE1-237ENST00000539504 TLR3O15455 904 aaKnown RBP11.91□□□□□ -0.5
SYNE1-237ENST00000539504 TNNI1P19237 187 aa11.91□□□□□ -0.5
SYNE1-237ENST00000539504 YWHABP31946 246 aaKnown RBP11.91□□□□□ -0.5
SYNE1-237ENST00000539504 KLC1Q07866 573 aa11.91□□□□□ -0.5
SYNE1-237ENST00000539504 ANO7Q6IWH7 933 aa11.91□□□□□ -0.5
SYNE1-237ENST00000539504 DTX3LQ8TDB6 740 aa11.91□□□□□ -0.5
SYNE1-237ENST00000539504 ZDHHC15Q96MV8 337 aa11.91□□□□□ -0.5
SYNE1-237ENST00000539504 MXRA8Q9BRK3 442 aa11.91□□□□□ -0.5
SYNE1-237ENST00000539504 XPO5Q9HAV4 1204 aaKnown RBP eCLIP11.91□□□□□ -0.5
SYNE1-237ENST00000539504 DLGAP2Q9P1A6 1054 aa11.91□□□□□ -0.5
SYNE1-237ENST00000539504 DNPEPQ9ULA0 475 aa11.91□□□□□ -0.5
SYNE1-237ENST00000539504 SGK1O00141 431 aa11.9□□□□□ -0.5
SYNE1-237ENST00000539504 LIN7AO14910 233 aaPredicted RBP11.9□□□□□ -0.5
SYNE1-237ENST00000539504 HNRNPDLO14979 420 aaKnown RBP11.9□□□□□ -0.5
SYNE1-237ENST00000539504 BANF1O75531 89 aa11.9□□□□□ -0.5
SYNE1-237ENST00000539504 KRT1P04264 644 aa11.9□□□□□ -0.5
SYNE1-237ENST00000539504 GNAZP19086 355 aa11.9□□□□□ -0.5
SYNE1-237ENST00000539504 LMNB2Q03252 620 aa11.9□□□□□ -0.5
SYNE1-237ENST00000539504 OTOAQ7RTW8 1153 aa11.9□□□□□ -0.5
SYNE1-237ENST00000539504 DDX1Q92499 740 aaKnown RBP11.9□□□□□ -0.5
SYNE1-237ENST00000539504 ZNF75CPQ92670 426 aaPredicted RBP11.9□□□□□ -0.5
SYNE1-237ENST00000539504 ACSF2Q96CM8 615 aaPredicted RBP11.9□□□□□ -0.5
SYNE1-237ENST00000539504 SLC7A6OSQ96CW6 309 aaPredicted RBP11.9□□□□□ -0.5
SYNE1-237ENST00000539504 TRIM11Q96F44 468 aa11.9□□□□□ -0.5
SYNE1-237ENST00000539504 TTC25Q96NG3 672 aa11.9□□□□□ -0.5
SYNE1-237ENST00000539504 SH3GL3Q99963 347 aa11.9□□□□□ -0.5
SYNE1-237ENST00000539504 FAM213AQ9BRX8 229 aa11.9□□□□□ -0.5
SYNE1-237ENST00000539504 HOMER2Q9NSB8 354 aa11.9□□□□□ -0.5
SYNE1-237ENST00000539504 FBXO28Q9NVF7 368 aa11.9□□□□□ -0.5
SYNE1-237ENST00000539504 KIF13BQ9NQT8 1826 aa11.9□□□□□ -0.5
SYNE1-237ENST00000539504 NVLO15381 856 aaKnown RBP11.9□□□□□ -0.5
SYNE1-237ENST00000539504 VIL1P09327 827 aaKnown RBP11.9□□□□□ -0.5
SYNE1-237ENST00000539504 FDX1P10109 184 aa11.9□□□□□ -0.5
SYNE1-237ENST00000539504 ATP6V1C1P21283 382 aa11.9□□□□□ -0.5
SYNE1-237ENST00000539504 PTPN4P29074 926 aa11.9□□□□□ -0.5
SYNE1-237ENST00000539504 PIK3CAP42336 1068 aa11.9□□□□□ -0.5
SYNE1-237ENST00000539504 MRPS35P82673 323 aaKnown RBP11.9□□□□□ -0.5
SYNE1-237ENST00000539504 TATDN1Q6P1N9 297 aa11.9□□□□□ -0.5
SYNE1-237ENST00000539504 CHURC1Q8WUH1 139 aa11.9□□□□□ -0.5
SYNE1-237ENST00000539504 FNBP1Q96RU3 617 aa11.9□□□□□ -0.5
SYNE1-237ENST00000539504 RIT2Q99578 217 aa11.9□□□□□ -0.5
SYNE1-237ENST00000539504 C12orf65Q9H3J6 166 aaKnown RBP11.9□□□□□ -0.5
SYNE1-237ENST00000539504 KMT5AQ9NQR1 393 aa11.9□□□□□ -0.5
SYNE1-237ENST00000539504 METTL5Q9NRN9 209 aaKnown RBP11.9□□□□□ -0.5
SYNE1-237ENST00000539504 STOML1Q9UBI4 398 aa11.9□□□□□ -0.5
SYNE1-237ENST00000539504 MYH11P35749 1972 aa11.9□□□□□ -0.5
SYNE1-237ENST00000539504 SPATA31A6Q5VVP1 1343 aa11.9□□□□□ -0.5
SYNE1-237ENST00000539504 CDK5RAP2Q96SN8 1893 aa11.9□□□□□ -0.5
SYNE1-237ENST00000539504 ITGB5P18084 799 aa11.9□□□□□ -0.51
SYNE1-237ENST00000539504 ERFP50548 548 aa11.9□□□□□ -0.51
SYNE1-237ENST00000539504 GPC3P51654 580 aa11.9□□□□□ -0.51
SYNE1-237ENST00000539504 DMP1Q13316 513 aaPredicted RBP11.9□□□□□ -0.51
SYNE1-237ENST00000539504 MOGSQ13724 837 aa11.9□□□□□ -0.51
SYNE1-237ENST00000539504 WASHC2DQ5SRD0 308 aa11.9□□□□□ -0.51
SYNE1-237ENST00000539504 RFX8Q6ZV50 586 aa11.9□□□□□ -0.51
SYNE1-237ENST00000539504 CENPUQ71F23 418 aa11.9□□□□□ -0.51
SYNE1-237ENST00000539504 C12orf56Q8IXR9 622 aa11.9□□□□□ -0.51
SYNE1-237ENST00000539504 CPXCR1Q8N123 301 aa11.9□□□□□ -0.51
SYNE1-237ENST00000539504 STMN2Q93045 179 aa11.9□□□□□ -0.51
SYNE1-237ENST00000539504 ANKRD27Q96NW4 1050 aa11.9□□□□□ -0.51
SYNE1-237ENST00000539504 GRID1Q9ULK0 1009 aa11.9□□□□□ -0.51
SYNE1-237ENST00000539504 TBX20Q9UMR3 447 aa11.9□□□□□ -0.51
SYNE1-237ENST00000539504 LRRC42Q9Y546 428 aa11.9□□□□□ -0.51
SYNE1-237ENST00000539504 GYG2O15488 501 aa11.89□□□□□ -0.51
SYNE1-237ENST00000539504 T-ENOLP0DO92 83 aa11.89□□□□□ -0.51
SYNE1-237ENST00000539504 MYCLP12524 364 aaPredicted RBP11.89□□□□□ -0.51
SYNE1-237ENST00000539504 ADRA1DP25100 572 aa11.89□□□□□ -0.51
SYNE1-237ENST00000539504 ADSSP30520 456 aa11.89□□□□□ -0.51
SYNE1-237ENST00000539504 HOXA10P31260 410 aaPredicted RBP11.89□□□□□ -0.51
SYNE1-237ENST00000539504 CCNG1P51959 295 aa11.89□□□□□ -0.51
SYNE1-237ENST00000539504 SOX10P56693 466 aa11.89□□□□□ -0.51
SYNE1-237ENST00000539504 GTF2BQ00403 316 aa11.89□□□□□ -0.51
SYNE1-237ENST00000539504 NFX1Q12986 1120 aaKnown RBP11.89□□□□□ -0.51
SYNE1-237ENST00000539504 RCN1Q15293 331 aa11.89□□□□□ -0.51
SYNE1-237ENST00000539504 LDHDQ86WU2 507 aa11.89□□□□□ -0.51
SYNE1-237ENST00000539504 C10orf82Q8WW14 230 aa11.89□□□□□ -0.51
SYNE1-237ENST00000539504 VCXQ9H320 206 aa11.89□□□□□ -0.51
SYNE1-237ENST00000539504 SENP1Q9P0U3 644 aa11.89□□□□□ -0.51
SYNE1-237ENST00000539504 PCDHB4Q9Y5E5 795 aa11.89□□□□□ -0.51
SYNE1-237ENST00000539504 SPDYE5A6NIY4 337 aa11.89□□□□□ -0.51
SYNE1-237ENST00000539504 DNALI1O14645 258 aaPredicted RBP11.89□□□□□ -0.51
SYNE1-237ENST00000539504 GRIN3BO60391 1043 aa11.89□□□□□ -0.51
SYNE1-237ENST00000539504 HAUS5O94927 633 aa11.89□□□□□ -0.51
SYNE1-237ENST00000539504 ABHD2P08910 425 aa11.89□□□□□ -0.51
SYNE1-237ENST00000539504 DYNLT1P63172 113 aa11.89□□□□□ -0.51
SYNE1-237ENST00000539504 ZRSR2Q15696 482 aaKnown RBP11.89□□□□□ -0.51
SYNE1-237ENST00000539504 BRDTQ58F21 947 aaPredicted RBP11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms