RNA–Protein interactions for RNA: ENST00000538654.5

SNHG1-209, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 2

Gene SNHG1, Length 2,768 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-209ENST00000538654 TKFCQ3LXA3 575 aa9.55□□□□□ -0.88
SNHG1-209ENST00000538654 SH2D4BQ5SQS7 431 aa9.55□□□□□ -0.88
SNHG1-209ENST00000538654 HHATQ5VTY9 493 aa9.55□□□□□ -0.88
SNHG1-209ENST00000538654 FOXB2Q5VYV0 432 aa9.55□□□□□ -0.88
SNHG1-209ENST00000538654 SLC44A5Q8NCS7 719 aa9.55□□□□□ -0.88
SNHG1-209ENST00000538654 STKLD1Q8NE28 680 aa9.55□□□□□ -0.88
SNHG1-209ENST00000538654 MKL1Q969V6 931 aa9.55□□□□□ -0.88
SNHG1-209ENST00000538654 GJD4Q96KN9 370 aaPredicted RBP9.55□□□□□ -0.88
SNHG1-209ENST00000538654 TTC25Q96NG3 672 aa9.55□□□□□ -0.88
SNHG1-209ENST00000538654 APBA2Q99767 749 aa9.55□□□□□ -0.88
SNHG1-209ENST00000538654 CRISPLD2Q9H0B8 497 aa9.55□□□□□ -0.88
SNHG1-209ENST00000538654 ALG2Q9H553 416 aa9.55□□□□□ -0.88
SNHG1-209ENST00000538654 SYNPO2Q9UMS6 1093 aa9.55□□□□□ -0.88
SNHG1-209ENST00000538654 PCDHB8Q9UN66 801 aa9.55□□□□□ -0.88
SNHG1-209ENST00000538654 SBDSQ9Y3A5 250 aaKnown RBP eCLIP9.55□□□□□ -0.88
SNHG1-209ENST00000538654 ZMYM2Q9UBW7 1377 aa9.55□□□□□ -0.88
SNHG1-209ENST00000538654 UBE4BO95155 1302 aa9.55□□□□□ -0.88
SNHG1-209ENST00000538654 SNED1Q8TER0 1413 aa9.55□□□□□ -0.88
SNHG1-209ENST00000538654 TRIM64CA6NLI5 447 aa9.55□□□□□ -0.88
SNHG1-209ENST00000538654 USP17L5A8MUK1 530 aa9.55□□□□□ -0.88
SNHG1-209ENST00000538654 CLIC2O15247 247 aa9.55□□□□□ -0.88
SNHG1-209ENST00000538654 GYG2O15488 501 aa9.55□□□□□ -0.88
SNHG1-209ENST00000538654 LDHBP07195 334 aaKnown RBP9.55□□□□□ -0.88
SNHG1-209ENST00000538654 DLATP10515 647 aaKnown RBP9.55□□□□□ -0.88
SNHG1-209ENST00000538654 IVDP26440 423 aa9.55□□□□□ -0.88
SNHG1-209ENST00000538654 RPA1P27694 616 aa9.55□□□□□ -0.88
SNHG1-209ENST00000538654 WASHC5Q12768 1159 aa9.55□□□□□ -0.88
SNHG1-209ENST00000538654 CETN1Q12798 172 aa9.55□□□□□ -0.88
SNHG1-209ENST00000538654 BRDTQ58F21 947 aaPredicted RBP9.55□□□□□ -0.88
SNHG1-209ENST00000538654 POTEGQ6S5H5 508 aa9.55□□□□□ -0.88
SNHG1-209ENST00000538654 MOXD1Q6UVY6 613 aa9.55□□□□□ -0.88
SNHG1-209ENST00000538654 STXBP4Q6ZWJ1 553 aa9.55□□□□□ -0.88
SNHG1-209ENST00000538654 HS2ST1Q7LGA3 356 aa9.55□□□□□ -0.88
SNHG1-209ENST00000538654 TAS1R3Q7RTX0 852 aa9.55□□□□□ -0.88
SNHG1-209ENST00000538654 VPS52Q8N1B4 723 aa9.55□□□□□ -0.88
SNHG1-209ENST00000538654 JPH3Q8WXH2 748 aaPredicted RBP9.55□□□□□ -0.88
SNHG1-209ENST00000538654 NDNQ99608 321 aa9.55□□□□□ -0.88
SNHG1-209ENST00000538654 CADM1Q9BY67 442 aaKnown RBP9.55□□□□□ -0.88
SNHG1-209ENST00000538654 TRABDQ9H4I3 376 aa9.55□□□□□ -0.88
SNHG1-209ENST00000538654 CYLDQ9NQC7 956 aa9.55□□□□□ -0.88
SNHG1-209ENST00000538654 CCDC87Q9NVE4 849 aa9.55□□□□□ -0.88
SNHG1-209ENST00000538654 ANKFY1Q9P2R3 1169 aa9.55□□□□□ -0.88
SNHG1-209ENST00000538654 UVRAGQ9P2Y5 699 aa9.55□□□□□ -0.88
SNHG1-209ENST00000538654 PHF24Q9UPV7 400 aa9.55□□□□□ -0.88
SNHG1-209ENST00000538654 ZNF652Q9Y2D9 606 aa9.55□□□□□ -0.88
SNHG1-209ENST00000538654 CYP3A7-CYP3A51PA0A087WV96 503 aa9.54□□□□□ -0.88
SNHG1-209ENST00000538654 EXOC1LA0A1B0GW35 172 aa9.54□□□□□ -0.88
SNHG1-209ENST00000538654 FOXO6A8MYZ6 492 aa9.54□□□□□ -0.88
SNHG1-209ENST00000538654 GSC2O15499 205 aa9.54□□□□□ -0.88
SNHG1-209ENST00000538654 HAUS5O94927 633 aa9.54□□□□□ -0.88
SNHG1-209ENST00000538654 CAMTA2O94983 1202 aa9.54□□□□□ -0.88
SNHG1-209ENST00000538654 EPB42P16452 691 aa9.54□□□□□ -0.88
SNHG1-209ENST00000538654 CYP3A7P24462 503 aa9.54□□□□□ -0.88
SNHG1-209ENST00000538654 CENPCQ03188 943 aa9.54□□□□□ -0.88
SNHG1-209ENST00000538654 UBE2SQ16763 222 aa9.54□□□□□ -0.88
SNHG1-209ENST00000538654 ARHGAP44Q17R89 818 aa9.54□□□□□ -0.88
SNHG1-209ENST00000538654 EAPPQ56P03 285 aaPredicted RBP9.54□□□□□ -0.88
SNHG1-209ENST00000538654 SEPT14Q6ZU15 432 aa9.54□□□□□ -0.88
SNHG1-209ENST00000538654 ZNF365Q70YC5 407 aa9.54□□□□□ -0.88
SNHG1-209ENST00000538654 RBM12BQ8IXT5 1001 aaKnown RBP9.54□□□□□ -0.88
SNHG1-209ENST00000538654 DDX55Q8NHQ9 600 aaKnown RBP eCLIP9.54□□□□□ -0.88
SNHG1-209ENST00000538654 WDR66Q8TBY9 1149 aa9.54□□□□□ -0.88
SNHG1-209ENST00000538654 LZICQ8WZA0 190 aa9.54□□□□□ -0.88
SNHG1-209ENST00000538654 GJA10Q969M2 543 aa9.54□□□□□ -0.88
SNHG1-209ENST00000538654 CEP95Q96GE4 821 aa9.54□□□□□ -0.88
SNHG1-209ENST00000538654 NSL1Q96IY1 281 aa9.54□□□□□ -0.88
SNHG1-209ENST00000538654 C12orf49Q9H741 205 aa9.54□□□□□ -0.88
SNHG1-209ENST00000538654 SSU72Q9NP77 194 aaKnown RBP9.54□□□□□ -0.88
SNHG1-209ENST00000538654 UMODL1Q5DID0 1318 aa9.54□□□□□ -0.88
SNHG1-209ENST00000538654 CETPP11597 493 aa9.54□□□□□ -0.88
SNHG1-209ENST00000538654 ATICP31939 592 aa9.54□□□□□ -0.88
SNHG1-209ENST00000538654 PABPC4Q13310 644 aaKnown RBP eCLIP9.54□□□□□ -0.88
SNHG1-209ENST00000538654 TMEM63BQ5T3F8 832 aa9.54□□□□□ -0.88
SNHG1-209ENST00000538654 MTDHQ86UE4 582 aaKnown RBP9.54□□□□□ -0.88
SNHG1-209ENST00000538654 CATSPER3Q86XQ3 398 aa9.54□□□□□ -0.88
SNHG1-209ENST00000538654 PALB2Q86YC2 1186 aa9.54□□□□□ -0.88
SNHG1-209ENST00000538654 UBR7Q8N806 425 aa9.54□□□□□ -0.88
SNHG1-209ENST00000538654 PHC3Q8NDX5 983 aa9.54□□□□□ -0.88
SNHG1-209ENST00000538654 ZNF564Q8TBZ8 553 aaPredicted RBP9.54□□□□□ -0.88
SNHG1-209ENST00000538654 TGFBRAP1Q8WUH2 860 aa9.54□□□□□ -0.88
SNHG1-209ENST00000538654 NRG4Q8WWG1 115 aa9.54□□□□□ -0.88
SNHG1-209ENST00000538654 IPCEF1Q8WWN9 437 aaPredicted RBP9.54□□□□□ -0.88
SNHG1-209ENST00000538654 E2F7Q96AV8 911 aa9.54□□□□□ -0.88
SNHG1-209ENST00000538654 SPATA16Q9BXB7 569 aa9.54□□□□□ -0.88
SNHG1-209ENST00000538654 PDGFDQ9GZP0 370 aaPredicted RBP9.54□□□□□ -0.88
SNHG1-209ENST00000538654 RETREG1Q9H6L5 497 aa9.54□□□□□ -0.88
SNHG1-209ENST00000538654 PSTPIP2Q9H939 334 aa9.54□□□□□ -0.88
SNHG1-209ENST00000538654 SLCO1B3Q9NPD5 702 aa9.54□□□□□ -0.88
SNHG1-209ENST00000538654 LMCD1Q9NZU5 365 aa9.54□□□□□ -0.88
SNHG1-209ENST00000538654 FRMD4AQ9P2Q2 1039 aaPredicted RBP9.54□□□□□ -0.88
SNHG1-209ENST00000538654 COL4A1P02462 1669 aa9.53□□□□□ -0.88
SNHG1-209ENST00000538654 WTIPA6NIX2 430 aaPredicted RBP9.53□□□□□ -0.88
SNHG1-209ENST00000538654 FOXN3O00409 490 aaPredicted RBP9.53□□□□□ -0.88
SNHG1-209ENST00000538654 TGFB1I1O43294 461 aa9.53□□□□□ -0.88
SNHG1-209ENST00000538654 KRT36O76013 467 aa9.53□□□□□ -0.88
SNHG1-209ENST00000538654 AGR2O95994 175 aa9.53□□□□□ -0.88
SNHG1-209ENST00000538654 CYP1A2P05177 515 aa9.53□□□□□ -0.88
SNHG1-209ENST00000538654 LYNP07948 512 aa9.53□□□□□ -0.88
SNHG1-209ENST00000538654 KRT15P19012 456 aa9.53□□□□□ -0.88
SNHG1-209ENST00000538654 CA4P22748 312 aa9.53□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms