RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 KIF12Q96FN5 646 aa12.36□□□□□ -0.43
VPS28-214ENST00000531032 BICD1Q96G01 975 aa12.36□□□□□ -0.43
VPS28-214ENST00000531032 BORCS6Q96GS4 357 aa12.36□□□□□ -0.43
VPS28-214ENST00000531032 ASB16Q96NS5 453 aa12.36□□□□□ -0.43
VPS28-214ENST00000531032 TSPAN18Q96SJ8 248 aa12.36□□□□□ -0.43
VPS28-214ENST00000531032 NELL2Q99435 816 aa12.36□□□□□ -0.43
VPS28-214ENST00000531032 REEP2Q9BRK0 252 aa12.36□□□□□ -0.43
VPS28-214ENST00000531032 OXCT2Q9BYC2 517 aaPredicted RBP12.36□□□□□ -0.43
VPS28-214ENST00000531032 HEBP1Q9NRV9 189 aa12.36□□□□□ -0.43
VPS28-214ENST00000531032 UBQLN1Q9UMX0 589 aaKnown RBP12.36□□□□□ -0.43
VPS28-214ENST00000531032 CACNA1AO00555 2505 aa12.36□□□□□ -0.43
VPS28-214ENST00000531032 HNRNPDLO14979 420 aaKnown RBP12.35□□□□□ -0.43
VPS28-214ENST00000531032 NCAM2O15394 837 aa12.35□□□□□ -0.43
VPS28-214ENST00000531032 VNN2O95498 520 aa12.35□□□□□ -0.43
VPS28-214ENST00000531032 CPB1P15086 417 aa12.35□□□□□ -0.43
VPS28-214ENST00000531032 MARCKSP29966 332 aaPredicted RBP12.35□□□□□ -0.43
VPS28-214ENST00000531032 MATR3P43243 847 aaKnown RBP eCLIP12.35□□□□□ -0.43
VPS28-214ENST00000531032 LIG4P49917 911 aa12.35□□□□□ -0.43
VPS28-214ENST00000531032 FZD5Q13467 585 aa12.35□□□□□ -0.43
VPS28-214ENST00000531032 GRM2Q14416 872 aa12.35□□□□□ -0.43
VPS28-214ENST00000531032 ENOX2Q16206 610 aaKnown RBP12.35□□□□□ -0.43
VPS28-214ENST00000531032 GPBP1Q86WP2 473 aa12.35□□□□□ -0.43
VPS28-214ENST00000531032 HS6ST3Q8IZP7 471 aa12.35□□□□□ -0.43
VPS28-214ENST00000531032 SUMF1Q8NBK3 374 aa12.35□□□□□ -0.43
VPS28-214ENST00000531032 SMARCD2Q92925 531 aa12.35□□□□□ -0.43
VPS28-214ENST00000531032 ZNF512Q96ME7 567 aaPredicted RBP12.35□□□□□ -0.43
VPS28-214ENST00000531032 ZSWIM3Q96MP5 696 aa12.35□□□□□ -0.43
VPS28-214ENST00000531032 TRMT61BQ9BVS5 477 aaKnown RBP12.35□□□□□ -0.43
VPS28-214ENST00000531032 TRPV4Q9HBA0 871 aa12.35□□□□□ -0.43
VPS28-214ENST00000531032 TRPV5Q9NQA5 729 aa12.35□□□□□ -0.43
VPS28-214ENST00000531032 ASAH2Q9NR71 780 aa12.35□□□□□ -0.43
VPS28-214ENST00000531032 BLOC1S4Q9NUP1 217 aa12.35□□□□□ -0.43
VPS28-214ENST00000531032 TBX20Q9UMR3 447 aa12.35□□□□□ -0.43
VPS28-214ENST00000531032 MRPS17Q9Y2R5 130 aaKnown RBP12.35□□□□□ -0.43
VPS28-214ENST00000531032 YIPF1Q9Y548 306 aa12.35□□□□□ -0.43
VPS28-214ENST00000531032 A0A0B4J269 797 aa12.34□□□□□ -0.43
VPS28-214ENST00000531032 OR6C75A6NL08 312 aa12.34□□□□□ -0.43
VPS28-214ENST00000531032 LACTBL1A8MY62 500 aa12.34□□□□□ -0.43
VPS28-214ENST00000531032 K7ENM7 598 aa12.34□□□□□ -0.43
VPS28-214ENST00000531032 SPTLC1O15269 473 aa12.34□□□□□ -0.43
VPS28-214ENST00000531032 OGTO15294 1046 aa12.34□□□□□ -0.43
VPS28-214ENST00000531032 XPOTO43592 962 aaKnown RBP12.34□□□□□ -0.43
VPS28-214ENST00000531032 KINO60870 393 aaKnown RBP12.34□□□□□ -0.43
VPS28-214ENST00000531032 BMP15O95972 392 aa12.34□□□□□ -0.43
VPS28-214ENST00000531032 UBA7P41226 1012 aa12.34□□□□□ -0.43
VPS28-214ENST00000531032 GPR17Q13304 367 aa12.34□□□□□ -0.43
VPS28-214ENST00000531032 VITQ6UXI7 678 aa12.34□□□□□ -0.43
VPS28-214ENST00000531032 MAP4K3Q8IVH8 894 aa12.34□□□□□ -0.43
VPS28-214ENST00000531032 ZNF687Q8N1G0 1237 aa12.34□□□□□ -0.43
VPS28-214ENST00000531032 RUBCNQ92622 972 aa12.34□□□□□ -0.43
VPS28-214ENST00000531032 NELL1Q92832 810 aa12.34□□□□□ -0.43
VPS28-214ENST00000531032 IRF7Q92985 503 aa12.34□□□□□ -0.43
VPS28-214ENST00000531032 CALML4Q96GE6 196 aa12.34□□□□□ -0.43
VPS28-214ENST00000531032 LRRC3Q9BY71 257 aa12.34□□□□□ -0.43
VPS28-214ENST00000531032 BRD9Q9H8M2 597 aa12.34□□□□□ -0.43
VPS28-214ENST00000531032 RPF1Q9H9Y2 349 aaKnown RBP12.34□□□□□ -0.43
VPS28-214ENST00000531032 PARVGQ9HBI0 331 aa12.34□□□□□ -0.43
VPS28-214ENST00000531032 PRMT8Q9NR22 394 aaPredicted RBP12.34□□□□□ -0.43
VPS28-214ENST00000531032 PCDHGA2Q9Y5H1 932 aa12.34□□□□□ -0.43
VPS28-214ENST00000531032 TIMM13Q9Y5L4 95 aaPredicted RBP12.34□□□□□ -0.43
VPS28-214ENST00000531032 TSC2P49815 1807 aa12.34□□□□□ -0.43
VPS28-214ENST00000531032 NCANO14594 1321 aa12.34□□□□□ -0.43
VPS28-214ENST00000531032 TICRRQ7Z2Z1 1910 aa12.33□□□□□ -0.44
VPS28-214ENST00000531032 F5P12259 2224 aa12.33□□□□□ -0.44
VPS28-214ENST00000531032 GPR179Q6PRD1 2367 aa12.33□□□□□ -0.44
VPS28-214ENST00000531032 DNAH14Q0VDD8 3507 aa12.33□□□□□ -0.44
VPS28-214ENST00000531032 MAN2B1O00754 1011 aa12.33□□□□□ -0.44
VPS28-214ENST00000531032 PPEF2O14830 753 aa12.33□□□□□ -0.44
VPS28-214ENST00000531032 TRAK2O60296 914 aa12.33□□□□□ -0.44
VPS28-214ENST00000531032 FAM13AO94988 1023 aa12.33□□□□□ -0.44
VPS28-214ENST00000531032 OR4Q2P0C623 313 aa12.33□□□□□ -0.44
VPS28-214ENST00000531032 MYL4P12829 197 aa12.33□□□□□ -0.44
VPS28-214ENST00000531032 GJA1P17302 382 aa12.33□□□□□ -0.44
VPS28-214ENST00000531032 PSMC3P17980 439 aa12.33□□□□□ -0.44
VPS28-214ENST00000531032 PLCG1P19174 1290 aa12.33□□□□□ -0.44
VPS28-214ENST00000531032 TYMPP19971 482 aa12.33□□□□□ -0.44
VPS28-214ENST00000531032 LONP1P36776 959 aaKnown RBP12.33□□□□□ -0.44
VPS28-214ENST00000531032 MCM2P49736 904 aa12.33□□□□□ -0.44
VPS28-214ENST00000531032 GUCY2FP51841 1108 aa12.33□□□□□ -0.44
VPS28-214ENST00000531032 CSTF1Q05048 431 aaKnown RBP12.33□□□□□ -0.44
VPS28-214ENST00000531032 PLD1Q13393 1074 aa12.33□□□□□ -0.44
VPS28-214ENST00000531032 MYBPC2Q14324 1141 aa12.33□□□□□ -0.44
VPS28-214ENST00000531032 SPATA1Q5VX52 437 aa12.33□□□□□ -0.44
VPS28-214ENST00000531032 SLC39A4Q6P5W5 647 aa12.33□□□□□ -0.44
VPS28-214ENST00000531032 USP37Q86T82 979 aa12.33□□□□□ -0.44
VPS28-214ENST00000531032 TMC8Q8IU68 726 aa12.33□□□□□ -0.44
VPS28-214ENST00000531032 CD302Q8IX05 232 aa12.33□□□□□ -0.44
VPS28-214ENST00000531032 MYCT1Q8N699 235 aa12.33□□□□□ -0.44
VPS28-214ENST00000531032 ZBTB44Q8NCP5 570 aa12.33□□□□□ -0.44
VPS28-214ENST00000531032 SHKBP1Q8TBC3 707 aa12.33□□□□□ -0.44
VPS28-214ENST00000531032 ZSCAN18Q8TBC5 510 aaPredicted RBP12.33□□□□□ -0.44
VPS28-214ENST00000531032 DEPDC1BQ8WUY9 529 aa12.33□□□□□ -0.44
VPS28-214ENST00000531032 PGLYRP2Q96PD5 576 aa12.33□□□□□ -0.44
VPS28-214ENST00000531032 FIZ1Q96SL8 496 aa12.33□□□□□ -0.44
VPS28-214ENST00000531032 GPR88Q9GZN0 384 aa12.33□□□□□ -0.44
VPS28-214ENST00000531032 DNAJC25Q9H1X3 360 aa12.33□□□□□ -0.44
VPS28-214ENST00000531032 CRISPLD1Q9H336 500 aa12.33□□□□□ -0.44
VPS28-214ENST00000531032 ZNF334Q9HCZ1 680 aaPredicted RBP12.33□□□□□ -0.44
VPS28-214ENST00000531032 CPSF3Q9UKF6 684 aaKnown RBP12.33□□□□□ -0.44
VPS28-214ENST00000531032 SMC3Q9UQE7 1217 aa12.33□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms