RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 SNX27Q96L92 541 aa22.73■■□□□ 1.23
VPS28-212ENST00000530836 RNPC3Q96LT9 517 aaKnown RBP22.73■■□□□ 1.23
VPS28-212ENST00000530836 A0A087X0T9 212 aa22.72■■□□□ 1.23
VPS28-212ENST00000530836 A0A1W2PPC1 479 aa22.72■■□□□ 1.23
VPS28-212ENST00000530836 PJA2O43164 708 aa22.72■■□□□ 1.23
VPS28-212ENST00000530836 FAM228BP0C875 321 aa22.72■■□□□ 1.23
VPS28-212ENST00000530836 PNMA6AP0CW24 399 aaPredicted RBP22.72■■□□□ 1.23
VPS28-212ENST00000530836 HACE1Q8IYU2 909 aa22.72■■□□□ 1.23
VPS28-212ENST00000530836 SNTG2Q9NY99 539 aa22.72■■□□□ 1.23
VPS28-212ENST00000530836 ANK1P16157 1881 aa22.72■■□□□ 1.23
VPS28-212ENST00000530836 ZBBXA8MT70 800 aa22.71■■□□□ 1.23
VPS28-212ENST00000530836 ENPP3O14638 875 aa22.71■■□□□ 1.23
VPS28-212ENST00000530836 MEFVO15553 781 aaPredicted RBP22.71■■□□□ 1.23
VPS28-212ENST00000530836 USP8P40818 1118 aa22.71■■□□□ 1.23
VPS28-212ENST00000530836 MYL6P60660 151 aa22.71■■□□□ 1.23
VPS28-212ENST00000530836 NAB2Q15742 525 aa22.71■■□□□ 1.23
VPS28-212ENST00000530836 ZNF699Q32M78 642 aa22.71■■□□□ 1.23
VPS28-212ENST00000530836 UBXN11Q5T124 520 aa22.71■■□□□ 1.23
VPS28-212ENST00000530836 TWF2Q6IBS0 349 aaKnown RBP22.71■■□□□ 1.23
VPS28-212ENST00000530836 RTN4RL1Q86UN2 441 aaPredicted RBP22.71■■□□□ 1.23
VPS28-212ENST00000530836 SYT11Q9BT88 431 aa22.71■■□□□ 1.23
VPS28-212ENST00000530836 NIF3L1Q9GZT8 377 aa22.71■■□□□ 1.23
VPS28-212ENST00000530836 FAM124BQ9H5Z6 455 aaPredicted RBP22.71■■□□□ 1.23
VPS28-212ENST00000530836 VRTNQ9H8Y1 702 aa22.71■■□□□ 1.23
VPS28-212ENST00000530836 UTP3Q9NQZ2 479 aaKnown RBP eCLIP22.71■■□□□ 1.231e-6■■■■■ 37.9
VPS28-212ENST00000530836 CNTN3Q9P232 1028 aa22.71■■□□□ 1.23
VPS28-212ENST00000530836 NAGPAQ9UK23 515 aa22.71■■□□□ 1.23
VPS28-212ENST00000530836 XPOTO43592 962 aaKnown RBP22.71■■□□□ 1.23
VPS28-212ENST00000530836 TNFAIP3P21580 790 aa22.71■■□□□ 1.23
VPS28-212ENST00000530836 PDE6CP51160 858 aa22.71■■□□□ 1.23
VPS28-212ENST00000530836 GNG11P61952 73 aa22.71■■□□□ 1.23
VPS28-212ENST00000530836 WDR5P61964 334 aaKnown RBP22.71■■□□□ 1.23
VPS28-212ENST00000530836 YWHAEP62258 255 aaKnown RBP22.71■■□□□ 1.23
VPS28-212ENST00000530836 ALKBH5Q6P6C2 394 aaKnown RBP22.71■■□□□ 1.23
VPS28-212ENST00000530836 ALKAL1Q6UXT8 129 aa22.71■■□□□ 1.23
VPS28-212ENST00000530836 GPIHBP1Q8IV16 184 aa22.71■■□□□ 1.23
VPS28-212ENST00000530836 C1orf127Q8N9H9 656 aa22.71■■□□□ 1.23
VPS28-212ENST00000530836 SLC30A5Q8TAD4 765 aa22.71■■□□□ 1.23
VPS28-212ENST00000530836 KIF12Q96FN5 646 aa22.71■■□□□ 1.23
VPS28-212ENST00000530836 FAM84AQ96KN4 292 aa22.71■■□□□ 1.23
VPS28-212ENST00000530836 AGPAT1Q99943 283 aa22.71■■□□□ 1.23
VPS28-212ENST00000530836 TSPYL2Q9H2G4 693 aaPredicted RBP22.71■■□□□ 1.23
VPS28-212ENST00000530836 APOBEC3GQ9HC16 384 aaKnown RBP22.71■■□□□ 1.23
VPS28-212ENST00000530836 INTUQ9ULD6 942 aa22.71■■□□□ 1.23
VPS28-212ENST00000530836 NUB1Q9Y5A7 615 aa22.71■■□□□ 1.23
VPS28-212ENST00000530836 SLC4A7Q9Y6M7 1214 aa22.71■■□□□ 1.23
VPS28-212ENST00000530836 LOC101059915A0A1B0GWI6 518 aaPredicted RBP22.7■■□□□ 1.22
VPS28-212ENST00000530836 MGEA5O60502 916 aa22.7■■□□□ 1.22
VPS28-212ENST00000530836 CLSTN1O94985 981 aa22.7■■□□□ 1.22
VPS28-212ENST00000530836 STAU1O95793 577 aaKnown RBP22.7■■□□□ 1.22
VPS28-212ENST00000530836 P4HA1P13674 534 aa22.7■■□□□ 1.22
VPS28-212ENST00000530836 ZSCAN20P17040 1043 aaPredicted RBP22.7■■□□□ 1.22
VPS28-212ENST00000530836 RBP5P82980 135 aa22.7■■□□□ 1.22
VPS28-212ENST00000530836 DSC3Q14574 896 aa22.7■■□□□ 1.22
VPS28-212ENST00000530836 LIN28BQ6ZN17 250 aaKnown RBP eCLIP22.7■■□□□ 1.22
VPS28-212ENST00000530836 ZNF677Q86XU0 584 aa22.7■■□□□ 1.22
VPS28-212ENST00000530836 LINC01599Q8WXQ3 324 aa22.7■■□□□ 1.22
VPS28-212ENST00000530836 TRAIPQ9BWF2 469 aa22.7■■□□□ 1.22
VPS28-212ENST00000530836 XYLT2Q9H1B5 865 aa22.7■■□□□ 1.22
VPS28-212ENST00000530836 NXF3Q9H4D5 531 aaKnown RBP22.7■■□□□ 1.22
VPS28-212ENST00000530836 CNTN6Q9UQ52 1028 aa22.7■■□□□ 1.22
VPS28-212ENST00000530836 GTF3C5Q9Y5Q8 519 aaPredicted RBP22.7■■□□□ 1.22
VPS28-212ENST00000530836 CYP26A1O43174 497 aa22.69■■□□□ 1.22
VPS28-212ENST00000530836 RECQL4O94761 1208 aa22.69■■□□□ 1.22
VPS28-212ENST00000530836 KRT19P08727 400 aa22.69■■□□□ 1.22
VPS28-212ENST00000530836 XKR4Q5GH76 650 aa22.69■■□□□ 1.22
VPS28-212ENST00000530836 SPOPLQ6IQ16 392 aa22.69■■□□□ 1.22
VPS28-212ENST00000530836 SYT10Q6XYQ8 523 aa22.69■■□□□ 1.22
VPS28-212ENST00000530836 BEST2Q8NFU1 509 aa22.69■■□□□ 1.22
VPS28-212ENST00000530836 EPS8L1Q8TE68 723 aa22.69■■□□□ 1.22
VPS28-212ENST00000530836 ADAM2Q99965 735 aa22.69■■□□□ 1.22
VPS28-212ENST00000530836 RGS18Q9NS28 235 aa22.69■■□□□ 1.22
VPS28-212ENST00000530836 DPP3Q9NY33 737 aa22.69■■□□□ 1.22
VPS28-212ENST00000530836 SIX4Q9UIU6 781 aa22.69■■□□□ 1.22
VPS28-212ENST00000530836 NENFQ9UMX5 172 aa22.69■■□□□ 1.22
VPS28-212ENST00000530836 GUCA1BQ9UMX6 200 aa22.69■■□□□ 1.22
VPS28-212ENST00000530836 IPPQ9Y573 584 aa22.69■■□□□ 1.22
VPS28-212ENST00000530836 PCDHB2Q9Y5E7 798 aa22.69■■□□□ 1.22
VPS28-212ENST00000530836 RALGAPA2Q2PPJ7 1873 aa22.69■■□□□ 1.22
VPS28-212ENST00000530836 DDX3XO00571 662 aaKnown RBP eCLIP22.68■■□□□ 1.226e-7■■□□□ 12.4
VPS28-212ENST00000530836 ITGB3P05106 788 aa22.68■■□□□ 1.22
VPS28-212ENST00000530836 KRT5P13647 590 aa22.68■■□□□ 1.22
VPS28-212ENST00000530836 RAB27AP51159 221 aa22.68■■□□□ 1.22
VPS28-212ENST00000530836 RNF10Q8N5U6 811 aaKnown RBP22.68■■□□□ 1.22
VPS28-212ENST00000530836 PHOSPHO2Q8TCD6 241 aa22.68■■□□□ 1.22
VPS28-212ENST00000530836 ZNF592Q92610 1267 aa22.68■■□□□ 1.22
VPS28-212ENST00000530836 DNAI1Q9UI46 699 aa22.68■■□□□ 1.22
VPS28-212ENST00000530836 CITO14578 2027 aa22.68■■□□□ 1.22
VPS28-212ENST00000530836 BTNL10A8MVZ5 291 aa22.68■■□□□ 1.22
VPS28-212ENST00000530836 AMHP03971 560 aa22.68■■□□□ 1.22
VPS28-212ENST00000530836 KCNE1P15382 129 aa22.68■■□□□ 1.22
VPS28-212ENST00000530836 CYP11B1P15538 503 aa22.68■■□□□ 1.22
VPS28-212ENST00000530836 ACO1P21399 889 aaKnown RBP22.68■■□□□ 1.22
VPS28-212ENST00000530836 ZBTB6Q15916 424 aa22.68■■□□□ 1.22
VPS28-212ENST00000530836 ZNF667Q5HYK9 610 aa22.68■■□□□ 1.22
VPS28-212ENST00000530836 CXorf38Q8TB03 319 aa22.68■■□□□ 1.22
VPS28-212ENST00000530836 LACRTQ9GZZ8 138 aa22.68■■□□□ 1.22
VPS28-212ENST00000530836 NOCTQ9UK39 431 aaKnown RBP22.68■■□□□ 1.22
VPS28-212ENST00000530836 UBQLN1Q9UMX0 589 aaKnown RBP22.68■■□□□ 1.22
VPS28-212ENST00000530836 A0A0U1RQJ8 604 aa22.67■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms