RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 LRRC36Q1X8D7 754 aa13.34□□□□□ -0.27
USP53-209ENST00000514665 FAM153CQ494X1 144 aa13.34□□□□□ -0.27
USP53-209ENST00000514665 ACAD10Q6JQN1 1059 aa13.34□□□□□ -0.27
USP53-209ENST00000514665 ST13P4Q8IZP2 240 aaPredicted RBP13.34□□□□□ -0.27
USP53-209ENST00000514665 SLC40A1Q9NP59 571 aa13.34□□□□□ -0.27
USP53-209ENST00000514665 ANKEF1Q9NU02 776 aa13.34□□□□□ -0.27
USP53-209ENST00000514665 ADA2Q9NZK5 511 aa13.34□□□□□ -0.27
USP53-209ENST00000514665 FAM153AQ9UHL3 310 aa13.34□□□□□ -0.27
USP53-209ENST00000514665 PDE4DIPQ5VU43 2346 aa13.34□□□□□ -0.27
USP53-209ENST00000514665 HNRNPH1P31943 449 aaKnown RBP13.34□□□□□ -0.27
USP53-209ENST00000514665 SH3BGRP55822 239 aaPredicted RBP13.34□□□□□ -0.27
USP53-209ENST00000514665 FAXCQ5TGI0 409 aa13.34□□□□□ -0.27
USP53-209ENST00000514665 CCDC138Q96M89 665 aa13.34□□□□□ -0.27
USP53-209ENST00000514665 WWP1Q9H0M0 922 aa13.34□□□□□ -0.27
USP53-209ENST00000514665 NDE1Q9NXR1 346 aa13.34□□□□□ -0.27
USP53-209ENST00000514665 NWD1Q149M9 1564 aa13.33□□□□□ -0.27
USP53-209ENST00000514665 PDE2AO00408 941 aaPredicted RBP13.33□□□□□ -0.28
USP53-209ENST00000514665 CYP11B1P15538 503 aa13.33□□□□□ -0.28
USP53-209ENST00000514665 YWHAHQ04917 246 aaPredicted RBP13.33□□□□□ -0.28
USP53-209ENST00000514665 ORC1Q13415 861 aa13.33□□□□□ -0.28
USP53-209ENST00000514665 ANGEL2Q5VTE6 544 aaKnown RBP13.33□□□□□ -0.28
USP53-209ENST00000514665 LVRNQ6Q4G3 990 aa13.33□□□□□ -0.28
USP53-209ENST00000514665 GCOM2Q9BZD3 368 aaPredicted RBP13.33□□□□□ -0.28
USP53-209ENST00000514665 ROPN1BQ9BZX4 212 aaPredicted RBP13.33□□□□□ -0.28
USP53-209ENST00000514665 DEFB129Q9H1M3 183 aa13.33□□□□□ -0.28
USP53-209ENST00000514665 EHD4Q9H223 541 aa13.33□□□□□ -0.28
USP53-209ENST00000514665 ELP3Q9H9T3 547 aa13.33□□□□□ -0.28
USP53-209ENST00000514665 ROPN1Q9HAT0 212 aaPredicted RBP13.33□□□□□ -0.28
USP53-209ENST00000514665 WDR35Q9P2L0 1181 aa13.33□□□□□ -0.28
USP53-209ENST00000514665 SPDYE2BA6NHP3 402 aa13.33□□□□□ -0.28
USP53-209ENST00000514665 ZBTB39O15060 712 aa13.33□□□□□ -0.28
USP53-209ENST00000514665 SPDYE6P0CI01 402 aa13.33□□□□□ -0.28
USP53-209ENST00000514665 MORF4L2Q15014 288 aa13.33□□□□□ -0.28
USP53-209ENST00000514665 FASTKD1Q53R41 847 aaKnown RBP13.33□□□□□ -0.28
USP53-209ENST00000514665 KCNT1Q5JUK3 1230 aa13.33□□□□□ -0.28
USP53-209ENST00000514665 SEMA4AQ9H3S1 761 aa13.33□□□□□ -0.28
USP53-209ENST00000514665 TYW5A2RUC4 315 aaKnown RBP13.33□□□□□ -0.28
USP53-209ENST00000514665 GOLGA8CPA6NN73 597 aa13.33□□□□□ -0.28
USP53-209ENST00000514665 NFIBO00712 420 aa13.33□□□□□ -0.28
USP53-209ENST00000514665 WNT7AO00755 349 aa13.33□□□□□ -0.28
USP53-209ENST00000514665 NPTX2P47972 431 aa13.33□□□□□ -0.28
USP53-209ENST00000514665 ZNF200P98182 395 aaPredicted RBP13.33□□□□□ -0.28
USP53-209ENST00000514665 GRIK5Q16478 980 aa13.33□□□□□ -0.28
USP53-209ENST00000514665 FAM71DQ8N9W8 422 aa13.33□□□□□ -0.28
USP53-209ENST00000514665 NIF3L1Q9GZT8 377 aa13.33□□□□□ -0.28
USP53-209ENST00000514665 PCMTD2Q9NV79 361 aa13.33□□□□□ -0.28
USP53-209ENST00000514665 EXTL3O43909 919 aa13.32□□□□□ -0.28
USP53-209ENST00000514665 CCDC22O60826 627 aa13.32□□□□□ -0.28
USP53-209ENST00000514665 TAC1P20366 129 aa13.32□□□□□ -0.28
USP53-209ENST00000514665 SHMT1P34896 483 aa13.32□□□□□ -0.28
USP53-209ENST00000514665 CPA2P48052 419 aa13.32□□□□□ -0.28
USP53-209ENST00000514665 SOX10P56693 466 aa13.32□□□□□ -0.28
USP53-209ENST00000514665 OVGP1Q12889 678 aa13.32□□□□□ -0.28
USP53-209ENST00000514665 PTK7Q13308 1070 aa13.32□□□□□ -0.28
USP53-209ENST00000514665 MXD4Q14582 209 aaPredicted RBP13.32□□□□□ -0.28
USP53-209ENST00000514665 SLC47A2Q86VL8 602 aa13.32□□□□□ -0.28
USP53-209ENST00000514665 ARHGEF26Q96DR7 871 aa13.32□□□□□ -0.28
USP53-209ENST00000514665 DDX4Q9NQI0 724 aaKnown RBP13.32□□□□□ -0.28
USP53-209ENST00000514665 LRFN2Q9ULH4 789 aa13.32□□□□□ -0.28
USP53-209ENST00000514665 FAM237AA0A1B0GTK4 181 aa13.32□□□□□ -0.28
USP53-209ENST00000514665 IGF2BP3O00425 579 aaKnown RBP eCLIP13.32□□□□□ -0.28
USP53-209ENST00000514665 ASAP2O43150 1006 aa13.32□□□□□ -0.28
USP53-209ENST00000514665 RBP5P82980 135 aa13.32□□□□□ -0.28
USP53-209ENST00000514665 CACNB2Q08289 660 aaPredicted RBP13.32□□□□□ -0.28
USP53-209ENST00000514665 MOXD1Q6UVY6 613 aa13.32□□□□□ -0.28
USP53-209ENST00000514665 LONP2Q86WA8 852 aa13.32□□□□□ -0.28
USP53-209ENST00000514665 CREG2Q8IUH2 290 aa13.32□□□□□ -0.28
USP53-209ENST00000514665 ACTRT1Q8TDG2 376 aa13.32□□□□□ -0.28
USP53-209ENST00000514665 SLC35C1Q96A29 364 aa13.32□□□□□ -0.28
USP53-209ENST00000514665 ZDHHC15Q96MV8 337 aa13.32□□□□□ -0.28
USP53-209ENST00000514665 KIF20BQ96Q89 1820 aa13.32□□□□□ -0.28
USP53-209ENST00000514665 FAM86B1E9PN63 330 aa13.32□□□□□ -0.28
USP53-209ENST00000514665 H3BRJ5 948 aa13.32□□□□□ -0.28
USP53-209ENST00000514665 EPHB6O15197 1021 aa13.32□□□□□ -0.28
USP53-209ENST00000514665 FAM86B2P0C5J1 330 aa13.32□□□□□ -0.28
USP53-209ENST00000514665 FNTAP49354 379 aa13.32□□□□□ -0.28
USP53-209ENST00000514665 ERVK-9P63128 1117 aa13.32□□□□□ -0.28
USP53-209ENST00000514665 KCNA1Q09470 495 aa13.32□□□□□ -0.28
USP53-209ENST00000514665 CAPRIN2Q6IMN6 1127 aaKnown RBP13.32□□□□□ -0.28
USP53-209ENST00000514665 FOXR1Q6PIV2 292 aa13.32□□□□□ -0.28
USP53-209ENST00000514665 SV2AQ7L0J3 742 aa13.32□□□□□ -0.28
USP53-209ENST00000514665 CLMNQ96JQ2 1002 aa13.32□□□□□ -0.28
USP53-209ENST00000514665 SPON2Q9BUD6 331 aa13.32□□□□□ -0.28
USP53-209ENST00000514665 PIN4Q9Y237 131 aaKnown RBP13.32□□□□□ -0.28
USP53-209ENST00000514665 SLC4A7Q9Y6M7 1214 aa13.32□□□□□ -0.28
USP53-209ENST00000514665 NEMP1O14524 444 aa13.31□□□□□ -0.28
USP53-209ENST00000514665 SLURP2P0DP57 97 aa13.31□□□□□ -0.28
USP53-209ENST00000514665 PAMP19021 973 aa13.31□□□□□ -0.28
USP53-209ENST00000514665 XPAP23025 273 aaPredicted RBP13.31□□□□□ -0.28
USP53-209ENST00000514665 PAPOLAP51003 745 aaKnown RBP13.31□□□□□ -0.28
USP53-209ENST00000514665 CUL3Q13618 768 aa13.31□□□□□ -0.28
USP53-209ENST00000514665 TMEM132DQ14C87 1099 aa13.31□□□□□ -0.28
USP53-209ENST00000514665 RANBP17Q9H2T7 1088 aaKnown RBP13.31□□□□□ -0.28
USP53-209ENST00000514665 TMBIM4Q9HC24 238 aa13.31□□□□□ -0.28
USP53-209ENST00000514665 USP20Q9Y2K6 914 aa13.31□□□□□ -0.28
USP53-209ENST00000514665 TMEM150BA6NC51 233 aa13.31□□□□□ -0.28
USP53-209ENST00000514665 NVLO15381 856 aaKnown RBP13.31□□□□□ -0.28
USP53-209ENST00000514665 FOXP2O15409 715 aa13.31□□□□□ -0.28
USP53-209ENST00000514665 AP2B1P63010 937 aa13.31□□□□□ -0.28
USP53-209ENST00000514665 NSUN2Q08J23 767 aaKnown RBP eCLIP13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms