RNA–Protein interactions for RNA: ENST00000513562.1

DDX41-216, Transcript of DEAD-box helicase 41, humanhuman

TSL 4

Gene DDX41, Length 552 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-216ENST00000513562 SPATA31C1P0DKV0 1188 aa12□□□□□ -0.49
DDX41-216ENST00000513562 XBP1P17861 261 aa12□□□□□ -0.49
DDX41-216ENST00000513562 GRM5P41594 1212 aa12□□□□□ -0.49
DDX41-216ENST00000513562 EFNA5P52803 228 aa12□□□□□ -0.49
DDX41-216ENST00000513562 ZNF252P-AS1Q0IIN9 211 aa12□□□□□ -0.49
DDX41-216ENST00000513562 FOXC1Q12948 553 aa12□□□□□ -0.49
DDX41-216ENST00000513562 ARHGAP29Q52LW3 1261 aa12□□□□□ -0.49
DDX41-216ENST00000513562 STXBP5Q5T5C0 1151 aa12□□□□□ -0.49
DDX41-216ENST00000513562 RNF19BQ6ZMZ0 732 aa12□□□□□ -0.49
DDX41-216ENST00000513562 RUFY3Q7L099 469 aa12□□□□□ -0.49
DDX41-216ENST00000513562 HAUS6Q7Z4H7 955 aa12□□□□□ -0.49
DDX41-216ENST00000513562 APBB1IPQ7Z5R6 666 aaPredicted RBP12□□□□□ -0.49
DDX41-216ENST00000513562 ARID3BQ8IVW6 561 aaPredicted RBP12□□□□□ -0.49
DDX41-216ENST00000513562 CEP120Q8N960 986 aa12□□□□□ -0.49
DDX41-216ENST00000513562 BEST2Q8NFU1 509 aa12□□□□□ -0.49
DDX41-216ENST00000513562 TTC8Q8TAM2 541 aa12□□□□□ -0.49
DDX41-216ENST00000513562 GATA6Q92908 595 aa12□□□□□ -0.49
DDX41-216ENST00000513562 TNFRSF25Q93038 417 aa12□□□□□ -0.49
DDX41-216ENST00000513562 ZFYVE19Q96K21 471 aa12□□□□□ -0.49
DDX41-216ENST00000513562 SUSD3Q96L08 255 aa12□□□□□ -0.49
DDX41-216ENST00000513562 ZMAT2Q96NC0 199 aaKnown RBP12□□□□□ -0.49
DDX41-216ENST00000513562 MKNK1Q9BUB5 465 aa12□□□□□ -0.49
DDX41-216ENST00000513562 EDEM2Q9BV94 578 aa12□□□□□ -0.49
DDX41-216ENST00000513562 KIFC3Q9BVG8 833 aa12□□□□□ -0.49
DDX41-216ENST00000513562 ADAM33Q9BZ11 813 aa12□□□□□ -0.49
DDX41-216ENST00000513562 DNAJC25Q9H1X3 360 aa12□□□□□ -0.49
DDX41-216ENST00000513562 OBP2AQ9NY56 170 aa12□□□□□ -0.49
DDX41-216ENST00000513562 NUB1Q9Y5A7 615 aa12□□□□□ -0.49
DDX41-216ENST00000513562 STK36Q9NRP7 1315 aa12□□□□□ -0.49
DDX41-216ENST00000513562 VNN2O95498 520 aa11.99□□□□□ -0.49
DDX41-216ENST00000513562 CPB1P15086 417 aa11.99□□□□□ -0.49
DDX41-216ENST00000513562 KCNE1P15382 129 aa11.99□□□□□ -0.49
DDX41-216ENST00000513562 CYP11B2P19099 503 aa11.99□□□□□ -0.49
DDX41-216ENST00000513562 SPINK2P20155 84 aa11.99□□□□□ -0.49
DDX41-216ENST00000513562 RPL9P32969 192 aaKnown RBP11.99□□□□□ -0.49
DDX41-216ENST00000513562 TXKP42681 527 aa11.99□□□□□ -0.49
DDX41-216ENST00000513562 YARSP54577 528 aaKnown RBP11.99□□□□□ -0.49
DDX41-216ENST00000513562 STK3Q13188 491 aa11.99□□□□□ -0.49
DDX41-216ENST00000513562 NR5A1Q13285 461 aa11.99□□□□□ -0.49
DDX41-216ENST00000513562 PLD1Q13393 1074 aa11.99□□□□□ -0.49
DDX41-216ENST00000513562 PPP2R5AQ15172 486 aa11.99□□□□□ -0.49
DDX41-216ENST00000513562 PLK5Q496M5 336 aa11.99□□□□□ -0.49
DDX41-216ENST00000513562 SKAP1Q86WV1 359 aa11.99□□□□□ -0.49
DDX41-216ENST00000513562 CATSPER3Q86XQ3 398 aa11.99□□□□□ -0.49
DDX41-216ENST00000513562 APPL2Q8NEU8 664 aa11.99□□□□□ -0.49
DDX41-216ENST00000513562 DDX12PQ92771 950 aa11.99□□□□□ -0.49
DDX41-216ENST00000513562 MTMR9Q96QG7 549 aa11.99□□□□□ -0.49
DDX41-216ENST00000513562 CCDC94Q9BW85 323 aaPredicted RBP11.99□□□□□ -0.49
DDX41-216ENST00000513562 CDT1Q9H211 546 aa11.99□□□□□ -0.49
DDX41-216ENST00000513562 ZSWIM6Q9HCJ5 1215 aa11.99□□□□□ -0.49
DDX41-216ENST00000513562 TUFT1Q9NNX1 390 aa11.99□□□□□ -0.49
DDX41-216ENST00000513562 TNFSF13BQ9Y275 285 aa11.99□□□□□ -0.49
DDX41-216ENST00000513562 CNOT1A5YKK6 2376 aaKnown RBP11.99□□□□□ -0.49
DDX41-216ENST00000513562 ANKRD11Q6UB99 2663 aaPredicted RBP11.98□□□□□ -0.49
DDX41-216ENST00000513562 SRRM3A6NNA2 597 aaPredicted RBP11.98□□□□□ -0.49
DDX41-216ENST00000513562 C4orf47A7E2U8 309 aa11.98□□□□□ -0.49
DDX41-216ENST00000513562 SOBPA7XYQ1 873 aa11.98□□□□□ -0.49
DDX41-216ENST00000513562 NEMFO60524 1076 aa11.98□□□□□ -0.49
DDX41-216ENST00000513562 ATG13O75143 517 aa11.98□□□□□ -0.49
DDX41-216ENST00000513562 MED24O75448 989 aa11.98□□□□□ -0.49
DDX41-216ENST00000513562 CDKL5O76039 1030 aa11.98□□□□□ -0.49
DDX41-216ENST00000513562 PLCB2Q00722 1185 aa11.98□□□□□ -0.49
DDX41-216ENST00000513562 CACNB1Q02641 598 aaPredicted RBP11.98□□□□□ -0.49
DDX41-216ENST00000513562 TNK2Q07912 1038 aa11.98□□□□□ -0.49
DDX41-216ENST00000513562 DAB2IPQ5VWQ8 1189 aa11.98□□□□□ -0.49
DDX41-216ENST00000513562 PADI6Q6TGC4 694 aa11.98□□□□□ -0.49
DDX41-216ENST00000513562 CAMKK1Q8N5S9 505 aa11.98□□□□□ -0.49
DDX41-216ENST00000513562 C18orf25Q96B23 403 aaPredicted RBP11.98□□□□□ -0.49
DDX41-216ENST00000513562 NACC1Q96RE7 527 aa11.98□□□□□ -0.49
DDX41-216ENST00000513562 TMEM209Q96SK2 561 aa11.98□□□□□ -0.49
DDX41-216ENST00000513562 LARP6Q9BRS8 491 aaKnown RBP11.98□□□□□ -0.49
DDX41-216ENST00000513562 DUSP15Q9H1R2 295 aaPredicted RBP11.98□□□□□ -0.49
DDX41-216ENST00000513562 CRISPLD1Q9H336 500 aa11.98□□□□□ -0.49
DDX41-216ENST00000513562 PTPRHQ9HD43 1115 aa11.98□□□□□ -0.49
DDX41-216ENST00000513562 CNTN3Q9P232 1028 aa11.98□□□□□ -0.49
DDX41-216ENST00000513562 PCDHB8Q9UN66 801 aa11.98□□□□□ -0.49
DDX41-216ENST00000513562 SLC8A2Q9UPR5 921 aa11.98□□□□□ -0.49
DDX41-216ENST00000513562 IGF2RP11717 2491 aa11.97□□□□□ -0.49
DDX41-216ENST00000513562 LNP1A1A4G5 178 aa11.97□□□□□ -0.49
DDX41-216ENST00000513562 ARHGEF35A5YM69 484 aa11.97□□□□□ -0.49
DDX41-216ENST00000513562 WNT7AO00755 349 aa11.97□□□□□ -0.49
DDX41-216ENST00000513562 DPYSL4O14531 572 aa11.97□□□□□ -0.49
DDX41-216ENST00000513562 PRAMEF12O95522 483 aa11.97□□□□□ -0.49
DDX41-216ENST00000513562 TOP3BO95985 862 aaKnown RBP11.97□□□□□ -0.49
DDX41-216ENST00000513562 WEE1P30291 646 aa11.97□□□□□ -0.49
DDX41-216ENST00000513562 MCM4P33991 863 aa11.97□□□□□ -0.49
DDX41-216ENST00000513562 KRT2P35908 639 aa11.97□□□□□ -0.49
DDX41-216ENST00000513562 EPHB3P54753 998 aa11.97□□□□□ -0.49
DDX41-216ENST00000513562 OSTNP61366 133 aa11.97□□□□□ -0.49
DDX41-216ENST00000513562 SCRN1Q12765 414 aa11.97□□□□□ -0.49
DDX41-216ENST00000513562 ITPRIPL2Q3MIP1 535 aa11.97□□□□□ -0.49
DDX41-216ENST00000513562 TMEM196Q5HYL7 178 aa11.97□□□□□ -0.49
DDX41-216ENST00000513562 SH3PXD2AQ5TCZ1 1133 aa11.97□□□□□ -0.49
DDX41-216ENST00000513562 FSTL4Q6MZW2 842 aa11.97□□□□□ -0.49
DDX41-216ENST00000513562 GAREM2Q75VX8 874 aa11.97□□□□□ -0.49
DDX41-216ENST00000513562 GPIHBP1Q8IV16 184 aa11.97□□□□□ -0.49
DDX41-216ENST00000513562 BPIFB1Q8TDL5 484 aa11.97□□□□□ -0.49
DDX41-216ENST00000513562 IFT74Q96LB3 600 aa11.97□□□□□ -0.49
DDX41-216ENST00000513562 TBC1D32Q96NH3 1257 aa11.97□□□□□ -0.49
DDX41-216ENST00000513562 POLR3CQ9BUI4 534 aaPredicted RBP11.97□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms