RNA–Protein interactions for RNA: ENST00000513016.5

VCAN-209, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 8,483 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-209ENST00000513016 CTNNB1P35222 781 aa4.47□□□□□ -1.69
VCAN-209ENST00000513016 EPHB4P54760 987 aa4.47□□□□□ -1.69
VCAN-209ENST00000513016 NPEPPSP55786 919 aa4.47□□□□□ -1.69
VCAN-209ENST00000513016 TP53BP2Q13625 1128 aa4.47□□□□□ -1.69
VCAN-209ENST00000513016 C16orf72Q14CZ0 275 aa4.47□□□□□ -1.69
VCAN-209ENST00000513016 TSGA10IPQ3SY00 556 aa4.47□□□□□ -1.69
VCAN-209ENST00000513016 RBBP8NLQ8NC74 664 aaPredicted RBP4.47□□□□□ -1.69
VCAN-209ENST00000513016 FBXO22Q8NEZ5 403 aa4.47□□□□□ -1.69
VCAN-209ENST00000513016 CFAP61Q8NHU2 1237 aa4.47□□□□□ -1.69
VCAN-209ENST00000513016 MRPS17Q9Y2R5 130 aaKnown RBP4.47□□□□□ -1.69
VCAN-209ENST00000513016 FIS1Q9Y3D6 152 aa4.47□□□□□ -1.69
VCAN-209ENST00000513016 MYO3AQ8NEV4 1616 aa4.47□□□□□ -1.69
VCAN-209ENST00000513016 A0A087WZ62 844 aa4.47□□□□□ -1.69
VCAN-209ENST00000513016 FAM170AA1A519 330 aa4.47□□□□□ -1.69
VCAN-209ENST00000513016 TARSL2A2RTX5 802 aaKnown RBP4.47□□□□□ -1.69
VCAN-209ENST00000513016 SMAPO00193 183 aa4.47□□□□□ -1.69
VCAN-209ENST00000513016 SERPIND1P05546 499 aa4.47□□□□□ -1.69
VCAN-209ENST00000513016 VIL1P09327 827 aaKnown RBP4.47□□□□□ -1.69
VCAN-209ENST00000513016 ACOT2P49753 483 aa4.47□□□□□ -1.69
VCAN-209ENST00000513016 RENBPP51606 427 aa4.47□□□□□ -1.69
VCAN-209ENST00000513016 PDAP1Q13442 181 aaKnown RBP4.47□□□□□ -1.69
VCAN-209ENST00000513016 GRIK4Q16099 956 aa4.47□□□□□ -1.69
VCAN-209ENST00000513016 CRLF3Q8IUI8 442 aa4.47□□□□□ -1.69
VCAN-209ENST00000513016 FBXO16Q8IX29 292 aaPredicted RBP4.47□□□□□ -1.69
VCAN-209ENST00000513016 USP38Q8NB14 1042 aa4.47□□□□□ -1.69
VCAN-209ENST00000513016 SLC20A1Q8WUM9 679 aa4.47□□□□□ -1.69
VCAN-209ENST00000513016 AIFM3Q96NN9 605 aa4.47□□□□□ -1.69
VCAN-209ENST00000513016 AGPAT1Q99943 283 aa4.47□□□□□ -1.69
VCAN-209ENST00000513016 NFKBIZQ9BYH8 718 aa4.47□□□□□ -1.69
VCAN-209ENST00000513016 CYP3A43Q9HB55 503 aa4.47□□□□□ -1.69
VCAN-209ENST00000513016 PXMP2Q9NR77 195 aa4.47□□□□□ -1.69
VCAN-209ENST00000513016 FGFR1OP2Q9NVK5 253 aa4.47□□□□□ -1.69
VCAN-209ENST00000513016 UVRAGQ9P2Y5 699 aa4.47□□□□□ -1.69
VCAN-209ENST00000513016 ZC3H13Q5T200 1668 aaKnown RBP4.46□□□□□ -1.69
VCAN-209ENST00000513016 PRMT3O60678 531 aa4.46□□□□□ -1.69
VCAN-209ENST00000513016 ANXA9O76027 345 aa4.46□□□□□ -1.69
VCAN-209ENST00000513016 FTLP02792 175 aaPredicted RBP4.46□□□□□ -1.69
VCAN-209ENST00000513016 VDRP11473 427 aa4.46□□□□□ -1.69
VCAN-209ENST00000513016 NMT1P30419 496 aaKnown RBP4.46□□□□□ -1.69
VCAN-209ENST00000513016 SH3BGRP55822 239 aaPredicted RBP4.46□□□□□ -1.69
VCAN-209ENST00000513016 MED21Q13503 144 aa4.46□□□□□ -1.69
VCAN-209ENST00000513016 GOLGA7BQ2TAP0 167 aa4.46□□□□□ -1.69
VCAN-209ENST00000513016 AARS2Q5JTZ9 985 aaKnown RBP4.46□□□□□ -1.69
VCAN-209ENST00000513016 C6orf118Q5T5N4 469 aa4.46□□□□□ -1.69
VCAN-209ENST00000513016 RETSATQ6NUM9 610 aa4.46□□□□□ -1.69
VCAN-209ENST00000513016 ERAP2Q6P179 960 aa4.46□□□□□ -1.69
VCAN-209ENST00000513016 SYDE1Q6ZW31 735 aaPredicted RBP4.46□□□□□ -1.69
VCAN-209ENST00000513016 UHMK1Q8TAS1 419 aaKnown RBP4.46□□□□□ -1.69
VCAN-209ENST00000513016 CHCHD3Q9NX63 227 aaKnown RBP4.46□□□□□ -1.69
VCAN-209ENST00000513016 CAMSAP3Q9P1Y5 1249 aaPredicted RBP4.46□□□□□ -1.69
VCAN-209ENST00000513016 ADAMTS1Q9UHI8 967 aa4.46□□□□□ -1.69
VCAN-209ENST00000513016 TRIM33Q9UPN9 1127 aa4.46□□□□□ -1.69
VCAN-209ENST00000513016 UNC13BO14795 1591 aa4.46□□□□□ -1.69
VCAN-209ENST00000513016 SPDYE5A6NIY4 337 aa4.46□□□□□ -1.7
VCAN-209ENST00000513016 CHUKO15111 745 aa4.46□□□□□ -1.7
VCAN-209ENST00000513016 AP1G2O75843 785 aa4.46□□□□□ -1.7
VCAN-209ENST00000513016 SYF2O95926 243 aaKnown RBP4.46□□□□□ -1.7
VCAN-209ENST00000513016 HMGCRP04035 888 aa4.46□□□□□ -1.7
VCAN-209ENST00000513016 MCF2P10911 925 aa4.46□□□□□ -1.7
VCAN-209ENST00000513016 GEMP55040 296 aa4.46□□□□□ -1.7
VCAN-209ENST00000513016 ABCE1P61221 599 aaKnown RBP4.46□□□□□ -1.7
VCAN-209ENST00000513016 SKP1P63208 163 aa4.46□□□□□ -1.7
VCAN-209ENST00000513016 ADCY2Q08462 1091 aa4.46□□□□□ -1.7
VCAN-209ENST00000513016 TWF1Q12792 350 aa4.46□□□□□ -1.7
VCAN-209ENST00000513016 SPDYE7PQ495Y7 208 aa4.46□□□□□ -1.7
VCAN-209ENST00000513016 TEDDM1Q5T9Z0 273 aa4.46□□□□□ -1.7
VCAN-209ENST00000513016 KHDRBS2Q5VWX1 349 aaKnown RBP4.46□□□□□ -1.7
VCAN-209ENST00000513016 EFL1Q7Z2Z2 1120 aaKnown RBP4.46□□□□□ -1.7
VCAN-209ENST00000513016 RIOX2Q8IUF8 465 aa4.46□□□□□ -1.7
VCAN-209ENST00000513016 GRAMD1CQ8IYS0 662 aa4.46□□□□□ -1.7
VCAN-209ENST00000513016 DDI1Q8WTU0 396 aa4.46□□□□□ -1.7
VCAN-209ENST00000513016 DTNBP1Q96EV8 351 aa4.46□□□□□ -1.7
VCAN-209ENST00000513016 CAPNS2Q96L46 248 aa4.46□□□□□ -1.7
VCAN-209ENST00000513016 NLNQ9BYT8 704 aa4.46□□□□□ -1.7
VCAN-209ENST00000513016 L3MBTL1Q9Y468 752 aa4.46□□□□□ -1.7
VCAN-209ENST00000513016 PHF20L1A8MW92 1017 aa4.46□□□□□ -1.7
VCAN-209ENST00000513016 DNAJC8O75937 253 aaPredicted RBP4.46□□□□□ -1.7
VCAN-209ENST00000513016 HLA-DRAP01903 254 aa4.46□□□□□ -1.7
VCAN-209ENST00000513016 CENPCQ03188 943 aa4.46□□□□□ -1.7
VCAN-209ENST00000513016 PTK6Q13882 451 aa4.46□□□□□ -1.7
VCAN-209ENST00000513016 CAPRIN1Q14444 709 aaKnown RBP4.46□□□□□ -1.7
VCAN-209ENST00000513016 PCBP1Q15365 356 aaKnown RBP eCLIP4.46□□□□□ -1.7
VCAN-209ENST00000513016 SNRNP35Q16560 246 aaKnown RBP4.46□□□□□ -1.7
VCAN-209ENST00000513016 NFRKBQ6P4R8 1299 aa4.46□□□□□ -1.7
VCAN-209ENST00000513016 RASSF3Q86WH2 238 aa4.46□□□□□ -1.7
VCAN-209ENST00000513016 WHAMMQ8TF30 809 aa4.46□□□□□ -1.7
VCAN-209ENST00000513016 PABPC5Q96DU9 382 aaKnown RBP4.46□□□□□ -1.7
VCAN-209ENST00000513016 WNK4Q96J92 1243 aa4.46□□□□□ -1.7
VCAN-209ENST00000513016 RPRD1AQ96P16 312 aaPredicted RBP4.46□□□□□ -1.7
VCAN-209ENST00000513016 CGRRF1Q99675 332 aa4.46□□□□□ -1.7
VCAN-209ENST00000513016 TRAIPQ9BWF2 469 aa4.46□□□□□ -1.7
VCAN-209ENST00000513016 IDI2Q9BXS1 227 aa4.46□□□□□ -1.7
VCAN-209ENST00000513016 CNOT10Q9H9A5 744 aaKnown RBP4.46□□□□□ -1.7
VCAN-209ENST00000513016 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP4.46□□□□□ -1.7
VCAN-209ENST00000513016 OGFRQ9NZT2 677 aa4.46□□□□□ -1.7
VCAN-209ENST00000513016 CRLS1Q9UJA2 301 aa4.46□□□□□ -1.7
VCAN-209ENST00000513016 PACSIN2Q9UNF0 486 aaPredicted RBP4.46□□□□□ -1.7
VCAN-209ENST00000513016 UMODL1Q5DID0 1318 aa4.46□□□□□ -1.7
VCAN-209ENST00000513016 RPTORQ8N122 1335 aa4.46□□□□□ -1.7
VCAN-209ENST00000513016 FAM187AA6NFU0 413 aa4.46□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms