RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 AVENQ9NQS1 362 aaPredicted RBP9.81□□□□□ -0.84
LIMCH1-215ENST00000512632 CTDP1Q9Y5B0 961 aaPredicted RBP9.81□□□□□ -0.84
LIMCH1-215ENST00000512632 SCN9AQ15858 1988 aa9.81□□□□□ -0.84
LIMCH1-215ENST00000512632 LYPLA2O95372 231 aa9.81□□□□□ -0.84
LIMCH1-215ENST00000512632 PECAM1P16284 738 aaPredicted RBP9.81□□□□□ -0.84
LIMCH1-215ENST00000512632 ARSEP51690 589 aa9.81□□□□□ -0.84
LIMCH1-215ENST00000512632 GCNT1Q02742 428 aa9.81□□□□□ -0.84
LIMCH1-215ENST00000512632 ZNF394Q53GI3 561 aa9.81□□□□□ -0.84
LIMCH1-215ENST00000512632 MFSD7Q6UXD7 560 aa9.81□□□□□ -0.84
LIMCH1-215ENST00000512632 PPP1R21Q6ZMI0 780 aa9.81□□□□□ -0.84
LIMCH1-215ENST00000512632 ANKMY2Q8IV38 441 aa9.81□□□□□ -0.84
LIMCH1-215ENST00000512632 FBF1Q8TES7 1133 aa9.81□□□□□ -0.84
LIMCH1-215ENST00000512632 TRABDQ9H4I3 376 aa9.81□□□□□ -0.84
LIMCH1-215ENST00000512632 A0A1W2PPM1 405 aa9.8□□□□□ -0.84
LIMCH1-215ENST00000512632 PIK3CAP42336 1068 aa9.8□□□□□ -0.84
LIMCH1-215ENST00000512632 MAMLD1Q13495 774 aa9.8□□□□□ -0.84
LIMCH1-215ENST00000512632 PGM5Q15124 567 aa9.8□□□□□ -0.84
LIMCH1-215ENST00000512632 NLRX1Q86UT6 975 aa9.8□□□□□ -0.84
LIMCH1-215ENST00000512632 FBXL18Q96ME1 805 aa9.8□□□□□ -0.84
LIMCH1-215ENST00000512632 PHTF1Q9UMS5 762 aa9.8□□□□□ -0.84
LIMCH1-215ENST00000512632 LTBP1Q14766 1721 aa9.8□□□□□ -0.84
LIMCH1-215ENST00000512632 LIG4P49917 911 aa9.8□□□□□ -0.84
LIMCH1-215ENST00000512632 ATP11AP98196 1134 aa9.8□□□□□ -0.84
LIMCH1-215ENST00000512632 CENPCQ03188 943 aa9.8□□□□□ -0.84
LIMCH1-215ENST00000512632 NFX1Q12986 1120 aaKnown RBP9.8□□□□□ -0.84
LIMCH1-215ENST00000512632 ARHGEF16Q5VV41 709 aa9.8□□□□□ -0.84
LIMCH1-215ENST00000512632 MCF2L2Q86YR7 1114 aa9.8□□□□□ -0.84
LIMCH1-215ENST00000512632 LBHD1Q9BQE6 289 aaPredicted RBP9.8□□□□□ -0.84
LIMCH1-215ENST00000512632 PDCD2LQ9BRP1 358 aa9.8□□□□□ -0.84
LIMCH1-215ENST00000512632 FAM167BQ9BTA0 163 aa9.8□□□□□ -0.84
LIMCH1-215ENST00000512632 C12orf65Q9H3J6 166 aaKnown RBP9.8□□□□□ -0.84
LIMCH1-215ENST00000512632 KIAA1586Q9HCI6 787 aa9.8□□□□□ -0.84
LIMCH1-215ENST00000512632 SAE1Q9UBE0 346 aaPredicted RBP9.8□□□□□ -0.84
LIMCH1-215ENST00000512632 PTPRJQ12913 1337 aa9.8□□□□□ -0.84
LIMCH1-215ENST00000512632 CCND1P24385 295 aa9.8□□□□□ -0.84
LIMCH1-215ENST00000512632 GNA15P30679 374 aa9.8□□□□□ -0.84
LIMCH1-215ENST00000512632 NLRP11P59045 1033 aaKnown RBP9.8□□□□□ -0.84
LIMCH1-215ENST00000512632 SETDB1Q15047 1291 aa9.8□□□□□ -0.84
LIMCH1-215ENST00000512632 SLC1A5Q15758 541 aa9.8□□□□□ -0.84
LIMCH1-215ENST00000512632 TDRD10Q5VZ19 366 aaKnown RBP9.8□□□□□ -0.84
LIMCH1-215ENST00000512632 TXNRD3NBQ6F5E7 133 aa9.8□□□□□ -0.84
LIMCH1-215ENST00000512632 MON1BQ7L1V2 547 aa9.8□□□□□ -0.84
LIMCH1-215ENST00000512632 ASRGL1Q7L266 308 aa9.8□□□□□ -0.84
LIMCH1-215ENST00000512632 TRABD2AQ86V40 505 aa9.8□□□□□ -0.84
LIMCH1-215ENST00000512632 ZBED8Q8IZ13 594 aa9.8□□□□□ -0.84
LIMCH1-215ENST00000512632 CCHCR1Q8TD31 782 aa9.8□□□□□ -0.84
LIMCH1-215ENST00000512632 UTP4Q969X6 686 aaKnown RBP9.8□□□□□ -0.84
LIMCH1-215ENST00000512632 ZNF570Q96NI8 536 aa9.8□□□□□ -0.84
LIMCH1-215ENST00000512632 PLCD4Q9BRC7 762 aa9.8□□□□□ -0.84
LIMCH1-215ENST00000512632 APOBEC3GQ9HC16 384 aaKnown RBP9.8□□□□□ -0.84
LIMCH1-215ENST00000512632 ANKEF1Q9NU02 776 aa9.8□□□□□ -0.84
LIMCH1-215ENST00000512632 SEPT9Q9UHD8 586 aaPredicted RBP9.8□□□□□ -0.84
LIMCH1-215ENST00000512632 LGALS13Q9UHV8 139 aa9.8□□□□□ -0.84
LIMCH1-215ENST00000512632 SYNPO2Q9UMS6 1093 aa9.8□□□□□ -0.84
LIMCH1-215ENST00000512632 RPA3P35244 121 aaPredicted RBP9.8□□□□□ -0.84
LIMCH1-215ENST00000512632 SNRPFP62306 86 aaKnown RBP9.8□□□□□ -0.84
LIMCH1-215ENST00000512632 DYNLT1P63172 113 aa9.8□□□□□ -0.84
LIMCH1-215ENST00000512632 MTERF2Q49AM1 385 aa9.8□□□□□ -0.84
LIMCH1-215ENST00000512632 ZBTB41Q5SVQ8 909 aa9.8□□□□□ -0.84
LIMCH1-215ENST00000512632 LRRC37BQ96QE4 947 aa9.8□□□□□ -0.84
LIMCH1-215ENST00000512632 KLF6Q99612 283 aaPredicted RBP9.8□□□□□ -0.84
LIMCH1-215ENST00000512632 CHKBQ9Y259 395 aa9.8□□□□□ -0.84
LIMCH1-215ENST00000512632 PCDHA10Q9Y5I2 948 aa9.8□□□□□ -0.84
LIMCH1-215ENST00000512632 F8VP50 259 aa9.79□□□□□ -0.84
LIMCH1-215ENST00000512632 TCEA3O75764 348 aa9.79□□□□□ -0.84
LIMCH1-215ENST00000512632 NEBLO76041 1014 aa9.79□□□□□ -0.84
LIMCH1-215ENST00000512632 UPP2O95045 317 aa9.79□□□□□ -0.84
LIMCH1-215ENST00000512632 UNC5CO95185 931 aa9.79□□□□□ -0.84
LIMCH1-215ENST00000512632 KRT1P04264 644 aa9.79□□□□□ -0.84
LIMCH1-215ENST00000512632 BAATQ14032 418 aaPredicted RBP9.79□□□□□ -0.84
LIMCH1-215ENST00000512632 BBOF1Q8ND07 529 aa9.79□□□□□ -0.84
LIMCH1-215ENST00000512632 CFAP57Q96MR6 1250 aa9.79□□□□□ -0.84
LIMCH1-215ENST00000512632 ALG13Q9NP73 1137 aaKnown RBP9.79□□□□□ -0.84
LIMCH1-215ENST00000512632 XPNPEP1Q9NQW7 623 aa9.79□□□□□ -0.84
LIMCH1-215ENST00000512632 IVNS1ABPQ9Y6Y0 642 aa9.79□□□□□ -0.84
LIMCH1-215ENST00000512632 H0Y3Z8 333 aa9.79□□□□□ -0.84
LIMCH1-215ENST00000512632 GOLGA8RI6L899 631 aa9.79□□□□□ -0.84
LIMCH1-215ENST00000512632 CBX6O95503 412 aa9.79□□□□□ -0.84
LIMCH1-215ENST00000512632 ASMTLO95671 621 aa9.79□□□□□ -0.84
LIMCH1-215ENST00000512632 ALADP13716 330 aa9.79□□□□□ -0.84
LIMCH1-215ENST00000512632 KLRC2P26717 231 aa9.79□□□□□ -0.84
LIMCH1-215ENST00000512632 GCAP28676 217 aa9.79□□□□□ -0.84
LIMCH1-215ENST00000512632 CETN2P41208 172 aa9.79□□□□□ -0.84
LIMCH1-215ENST00000512632 NOMO3P69849 1222 aa9.79□□□□□ -0.84
LIMCH1-215ENST00000512632 GAD2Q05329 585 aa9.79□□□□□ -0.84
LIMCH1-215ENST00000512632 MKRN3Q13064 507 aaKnown RBP9.79□□□□□ -0.84
LIMCH1-215ENST00000512632 SPARCL1Q14515 664 aa9.79□□□□□ -0.84
LIMCH1-215ENST00000512632 CRYMQ14894 314 aa9.79□□□□□ -0.84
LIMCH1-215ENST00000512632 RNF43Q68DV7 783 aa9.79□□□□□ -0.84
LIMCH1-215ENST00000512632 ENOSF1Q7L5Y1 443 aa9.79□□□□□ -0.84
LIMCH1-215ENST00000512632 MICAL1Q8TDZ2 1067 aa9.79□□□□□ -0.84
LIMCH1-215ENST00000512632 TMEM143Q96AN5 459 aa9.79□□□□□ -0.84
LIMCH1-215ENST00000512632 TMEM121Q9BTD3 319 aa9.79□□□□□ -0.84
LIMCH1-215ENST00000512632 SLC24A3Q9HC58 644 aa9.79□□□□□ -0.84
LIMCH1-215ENST00000512632 GRID1Q9ULK0 1009 aa9.79□□□□□ -0.84
LIMCH1-215ENST00000512632 CYP1A1P04798 512 aaPredicted RBP9.79□□□□□ -0.84
LIMCH1-215ENST00000512632 ASNSP08243 561 aa9.79□□□□□ -0.84
LIMCH1-215ENST00000512632 BPIFB4P59827 614 aa9.79□□□□□ -0.84
LIMCH1-215ENST00000512632 PDIA2Q13087 525 aaKnown RBP9.79□□□□□ -0.84
LIMCH1-215ENST00000512632 ZACNQ401N2 412 aa9.79□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms