RNA–Protein interactions for RNA: ENST00000512151.5

NUP54-211, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,385 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-211ENST00000512151 TBX3O15119 743 aa10.08□□□□□ -0.8
NUP54-211ENST00000512151 ATG13O75143 517 aa10.08□□□□□ -0.8
NUP54-211ENST00000512151 RECQL4O94761 1208 aa10.08□□□□□ -0.8
NUP54-211ENST00000512151 B3GAT3O94766 335 aa10.08□□□□□ -0.8
NUP54-211ENST00000512151 TDP2O95551 362 aa10.08□□□□□ -0.8
NUP54-211ENST00000512151 APBB3O95704 486 aa10.08□□□□□ -0.8
NUP54-211ENST00000512151 ENGP17813 658 aa10.08□□□□□ -0.8
NUP54-211ENST00000512151 U2AF2P26368 475 aaKnown RBP eCLIP10.08□□□□□ -0.85e-7■□□□□ 8.9
NUP54-211ENST00000512151 CHMLP26374 656 aa10.08□□□□□ -0.8
NUP54-211ENST00000512151 RFC5P40937 340 aa10.08□□□□□ -0.8
NUP54-211ENST00000512151 CLCNKBP51801 687 aa10.08□□□□□ -0.8
NUP54-211ENST00000512151 PCBP1Q15365 356 aaKnown RBP eCLIP10.08□□□□□ -0.8
NUP54-211ENST00000512151 ARHGAP29Q52LW3 1261 aa10.08□□□□□ -0.8
NUP54-211ENST00000512151 TRIM61Q5EBN2 209 aa10.08□□□□□ -0.8
NUP54-211ENST00000512151 IQCEQ6IPM2 695 aa10.08□□□□□ -0.8
NUP54-211ENST00000512151 ETNPPLQ8TBG4 499 aa10.08□□□□□ -0.8
NUP54-211ENST00000512151 EZH1Q92800 747 aaPredicted RBP10.08□□□□□ -0.8
NUP54-211ENST00000512151 TPSD1Q9BZJ3 242 aa10.08□□□□□ -0.8
NUP54-211ENST00000512151 GOLGA2P5Q9HBQ8 144 aa10.08□□□□□ -0.8
NUP54-211ENST00000512151 TMEM74BQ9NUR3 256 aa10.08□□□□□ -0.8
NUP54-211ENST00000512151 RBM28Q9NW13 759 aaKnown RBP10.08□□□□□ -0.8
NUP54-211ENST00000512151 TRIP11Q15643 1979 aa10.07□□□□□ -0.8
NUP54-211ENST00000512151 KIAA1549LQ6ZVL6 1849 aa10.07□□□□□ -0.8
NUP54-211ENST00000512151 TRDMT1O14717 391 aaKnown RBP10.07□□□□□ -0.8
NUP54-211ENST00000512151 VNN2O95498 520 aa10.07□□□□□ -0.8
NUP54-211ENST00000512151 QARSP47897 775 aaKnown RBP10.07□□□□□ -0.8
NUP54-211ENST00000512151 DHPSP49366 369 aaPredicted RBP10.07□□□□□ -0.8
NUP54-211ENST00000512151 DGKEP52429 567 aa10.07□□□□□ -0.8
NUP54-211ENST00000512151 NCBP1Q09161 790 aaKnown RBP10.07□□□□□ -0.8
NUP54-211ENST00000512151 GRSF1Q12849 480 aaKnown RBP eCLIP10.07□□□□□ -0.8
NUP54-211ENST00000512151 DMC1Q14565 340 aa10.07□□□□□ -0.8
NUP54-211ENST00000512151 ZNF423Q2M1K9 1284 aa10.07□□□□□ -0.8
NUP54-211ENST00000512151 ITPRIPL2Q3MIP1 535 aa10.07□□□□□ -0.8
NUP54-211ENST00000512151 Q4G0T1 1027 aa10.07□□□□□ -0.8
NUP54-211ENST00000512151 GLRA4Q5JXX5 417 aa10.07□□□□□ -0.8
NUP54-211ENST00000512151 PNPLA1Q8N8W4 532 aa10.07□□□□□ -0.8
NUP54-211ENST00000512151 OR2I1PQ8NGU4 316 aa10.07□□□□□ -0.8
NUP54-211ENST00000512151 TCP11Q8WWU5 503 aa10.07□□□□□ -0.8
NUP54-211ENST00000512151 CAMK1GQ96NX5 476 aa10.07□□□□□ -0.8
NUP54-211ENST00000512151 PPP1R10Q96QC0 940 aaKnown RBP10.07□□□□□ -0.8
NUP54-211ENST00000512151 UBL7Q96S82 380 aaPredicted RBP10.07□□□□□ -0.8
NUP54-211ENST00000512151 GPR88Q9GZN0 384 aa10.07□□□□□ -0.8
NUP54-211ENST00000512151 DNAJC25Q9H1X3 360 aa10.07□□□□□ -0.8
NUP54-211ENST00000512151 C6orf50Q9HD87 102 aa10.07□□□□□ -0.8
NUP54-211ENST00000512151 HPS4Q9NQG7 708 aa10.07□□□□□ -0.8
NUP54-211ENST00000512151 DACH1Q9UI36 760 aa10.07□□□□□ -0.8
NUP54-211ENST00000512151 FBXL5Q9UKA1 691 aa10.07□□□□□ -0.8
NUP54-211ENST00000512151 USP20Q9Y2K6 914 aa10.07□□□□□ -0.8
NUP54-211ENST00000512151 NUP210Q8TEM1 1887 aaPredicted RBP10.07□□□□□ -0.8
NUP54-211ENST00000512151 MYO16Q9Y6X6 1858 aa10.07□□□□□ -0.8
NUP54-211ENST00000512151 PTPRDP23468 1912 aa10.07□□□□□ -0.8
NUP54-211ENST00000512151 PTPRBP23467 1997 aa10.06□□□□□ -0.8
NUP54-211ENST00000512151 ANTXRLA6NF34 631 aa10.06□□□□□ -0.8
NUP54-211ENST00000512151 SGSM2O43147 1006 aa10.06□□□□□ -0.8
NUP54-211ENST00000512151 CD59P13987 128 aa10.06□□□□□ -0.8
NUP54-211ENST00000512151 GLRA2P23416 452 aa10.06□□□□□ -0.8
NUP54-211ENST00000512151 USP11P51784 963 aa10.06□□□□□ -0.8
NUP54-211ENST00000512151 POU5F1BQ06416 359 aa10.06□□□□□ -0.8
NUP54-211ENST00000512151 SOX4Q06945 474 aaPredicted RBP10.06□□□□□ -0.8
NUP54-211ENST00000512151 LMAN2Q12907 356 aa10.06□□□□□ -0.8
NUP54-211ENST00000512151 MRPL58Q14197 206 aaKnown RBP10.06□□□□□ -0.8
NUP54-211ENST00000512151 UPP1Q16831 310 aa10.06□□□□□ -0.8
NUP54-211ENST00000512151 RNF19BQ6ZMZ0 732 aa10.06□□□□□ -0.8
NUP54-211ENST00000512151 GAREM2Q75VX8 874 aa10.06□□□□□ -0.8
NUP54-211ENST00000512151 ARMCX6Q7L4S7 300 aa10.06□□□□□ -0.8
NUP54-211ENST00000512151 SYT13Q7L8C5 426 aa10.06□□□□□ -0.8
NUP54-211ENST00000512151 MARCH9Q86YJ5 346 aa10.06□□□□□ -0.8
NUP54-211ENST00000512151 ELMOD1Q8N336 334 aa10.06□□□□□ -0.8
NUP54-211ENST00000512151 ZNF843Q8N446 348 aa10.06□□□□□ -0.8
NUP54-211ENST00000512151 LEMD2Q8NC56 503 aa10.06□□□□□ -0.8
NUP54-211ENST00000512151 RPLP0P6Q8NHW5 317 aa10.06□□□□□ -0.8
NUP54-211ENST00000512151 ADAMTS14Q8WXS8 1223 aa10.06□□□□□ -0.8
NUP54-211ENST00000512151 MTRQ99707 1265 aa10.06□□□□□ -0.8
NUP54-211ENST00000512151 HNRNPABQ99729 332 aaKnown RBP10.06□□□□□ -0.8
NUP54-211ENST00000512151 POLR3CQ9BUI4 534 aaPredicted RBP10.06□□□□□ -0.8
NUP54-211ENST00000512151 SMG9Q9H0W8 520 aaKnown RBP10.06□□□□□ -0.8
NUP54-211ENST00000512151 CRISPLD1Q9H336 500 aa10.06□□□□□ -0.8
NUP54-211ENST00000512151 PDZD7Q9H5P4 517 aa10.06□□□□□ -0.8
NUP54-211ENST00000512151 VAV3Q9UKW4 847 aa10.06□□□□□ -0.8
NUP54-211ENST00000512151 RBM19Q9Y4C8 960 aaKnown RBP10.06□□□□□ -0.8
NUP54-211ENST00000512151 YIPF1Q9Y548 306 aa10.06□□□□□ -0.8
NUP54-211ENST00000512151 ATXN2Q99700 1313 aaKnown RBP10.06□□□□□ -0.8
NUP54-211ENST00000512151 CDC45O75419 566 aa10.05□□□□□ -0.8
NUP54-211ENST00000512151 EDN1P05305 212 aa10.05□□□□□ -0.8
NUP54-211ENST00000512151 ADD1P35611 737 aaKnown RBP10.05□□□□□ -0.8
NUP54-211ENST00000512151 ARL2P36404 184 aa10.05□□□□□ -0.8
NUP54-211ENST00000512151 PTGER3P43115 390 aa10.05□□□□□ -0.8
NUP54-211ENST00000512151 GALK1P51570 392 aa10.05□□□□□ -0.8
NUP54-211ENST00000512151 MXD4Q14582 209 aaPredicted RBP10.05□□□□□ -0.8
NUP54-211ENST00000512151 XKR9Q5GH70 373 aa10.05□□□□□ -0.8
NUP54-211ENST00000512151 TPGS2Q68CL5 300 aa10.05□□□□□ -0.8
NUP54-211ENST00000512151 TRIM68Q6AZZ1 485 aa10.05□□□□□ -0.8
NUP54-211ENST00000512151 HAUS6Q7Z4H7 955 aa10.05□□□□□ -0.8
NUP54-211ENST00000512151 ZNF605Q86T29 641 aa10.05□□□□□ -0.8
NUP54-211ENST00000512151 NOSTRINQ8IVI9 506 aa10.05□□□□□ -0.8
NUP54-211ENST00000512151 EXOC8Q8IYI6 725 aa10.05□□□□□ -0.8
NUP54-211ENST00000512151 FRMD1Q8N878 549 aa10.05□□□□□ -0.8
NUP54-211ENST00000512151 BPIFB1Q8TDL5 484 aa10.05□□□□□ -0.8
NUP54-211ENST00000512151 TBCKQ8TEA7 893 aa10.05□□□□□ -0.8
NUP54-211ENST00000512151 TCEANC2Q96MN5 208 aa10.05□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms