RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 DYRK1AQ13627 763 aa3.99□□□□□ -1.77
NUP54-208ENST00000508604 CD300EQ496F6 205 aaPredicted RBP3.99□□□□□ -1.77
NUP54-208ENST00000508604 ZNF626Q68DY1 528 aa3.99□□□□□ -1.77
NUP54-208ENST00000508604 SLC9A4Q6AI14 798 aa3.99□□□□□ -1.77
NUP54-208ENST00000508604 KCNK18Q7Z418 384 aa3.99□□□□□ -1.77
NUP54-208ENST00000508604 LMBR1Q8WVP7 490 aa3.99□□□□□ -1.77
NUP54-208ENST00000508604 UBXN4Q92575 508 aa3.99□□□□□ -1.77
NUP54-208ENST00000508604 C7orf25Q9BPX7 421 aa3.99□□□□□ -1.77
NUP54-208ENST00000508604 NR2E3Q9Y5X4 410 aa3.99□□□□□ -1.77
NUP54-208ENST00000508604 ZNF521Q96K83 1311 aa3.98□□□□□ -1.77
NUP54-208ENST00000508604 KCNAB3O43448 404 aa3.98□□□□□ -1.77
NUP54-208ENST00000508604 GATA3P23771 443 aa3.98□□□□□ -1.77
NUP54-208ENST00000508604 CERS1P27544 350 aa3.98□□□□□ -1.77
NUP54-208ENST00000508604 ID4P47928 161 aa3.98□□□□□ -1.77
NUP54-208ENST00000508604 PIGFQ07326 219 aa3.98□□□□□ -1.77
NUP54-208ENST00000508604 C11orf87Q6NUJ2 197 aa3.98□□□□□ -1.77
NUP54-208ENST00000508604 AOPEPQ8N6M6 819 aa3.98□□□□□ -1.77
NUP54-208ENST00000508604 MYCBPAPQ8TBZ2 947 aa3.98□□□□□ -1.77
NUP54-208ENST00000508604 DENND1AQ8TEH3 1009 aa3.98□□□□□ -1.77
NUP54-208ENST00000508604 ORAI2Q96SN7 254 aa3.98□□□□□ -1.77
NUP54-208ENST00000508604 BHMT2Q9H2M3 363 aa3.98□□□□□ -1.77
NUP54-208ENST00000508604 KLC4Q9NSK0 619 aa3.98□□□□□ -1.77
NUP54-208ENST00000508604 DNAJC28Q9NX36 388 aa3.98□□□□□ -1.77
NUP54-208ENST00000508604 PCDHGA2Q9Y5H1 932 aa3.98□□□□□ -1.77
NUP54-208ENST00000508604 A0A087X0B3 334 aa3.97□□□□□ -1.77
NUP54-208ENST00000508604 AGFG2O95081 481 aa3.97□□□□□ -1.77
NUP54-208ENST00000508604 CD1AP06126 327 aa3.97□□□□□ -1.77
NUP54-208ENST00000508604 CBSLP0DN79 551 aa3.97□□□□□ -1.77
NUP54-208ENST00000508604 CBSP35520 551 aa3.97□□□□□ -1.77
NUP54-208ENST00000508604 SLC6A9P48067 706 aa3.97□□□□□ -1.77
NUP54-208ENST00000508604 ANXA11P50995 505 aaKnown RBP3.97□□□□□ -1.77
NUP54-208ENST00000508604 SSBP2P81877 361 aaPredicted RBP3.97□□□□□ -1.77
NUP54-208ENST00000508604 SRSF2Q01130 221 aaKnown RBP3.97□□□□□ -1.77
NUP54-208ENST00000508604 STRN3Q13033 797 aa3.97□□□□□ -1.77
NUP54-208ENST00000508604 HLXQ14774 488 aaPredicted RBP3.97□□□□□ -1.77
NUP54-208ENST00000508604 SEPT2Q15019 361 aa3.97□□□□□ -1.77
NUP54-208ENST00000508604 TMEM119Q4V9L6 283 aa3.97□□□□□ -1.77
NUP54-208ENST00000508604 PLAC9Q5JTB6 97 aa3.97□□□□□ -1.77
NUP54-208ENST00000508604 UTP14CQ5TAP6 766 aaKnown RBP3.97□□□□□ -1.77
NUP54-208ENST00000508604 DRC1Q96MC2 740 aa3.97□□□□□ -1.77
NUP54-208ENST00000508604 PIF1Q9H611 641 aa3.97□□□□□ -1.77
NUP54-208ENST00000508604 CCDC195A0A1B0GUA6 201 aa3.97□□□□□ -1.77
NUP54-208ENST00000508604 TP73O15350 636 aa3.97□□□□□ -1.77
NUP54-208ENST00000508604 AMY1AP04745 511 aa3.97□□□□□ -1.77
NUP54-208ENST00000508604 ELFN1P0C7U0 828 aa3.97□□□□□ -1.77
NUP54-208ENST00000508604 PPP3CBP16298 524 aa3.97□□□□□ -1.77
NUP54-208ENST00000508604 CTXN1P60606 82 aa3.97□□□□□ -1.77
NUP54-208ENST00000508604 MORN5Q5VZ52 161 aa3.97□□□□□ -1.77
NUP54-208ENST00000508604 RSPH3Q86UC2 560 aa3.97□□□□□ -1.77
NUP54-208ENST00000508604 ADGRG5Q8IZF4 528 aa3.97□□□□□ -1.77
NUP54-208ENST00000508604 ABCF1Q8NE71 845 aaKnown RBP eCLIP3.97□□□□□ -1.77
NUP54-208ENST00000508604 PBKQ96KB5 322 aa3.97□□□□□ -1.77
NUP54-208ENST00000508604 ALG8Q9BVK2 526 aa3.97□□□□□ -1.77
NUP54-208ENST00000508604 TLR10Q9BXR5 811 aa3.97□□□□□ -1.77
NUP54-208ENST00000508604 BRINP1O60477 761 aa3.96□□□□□ -1.78
NUP54-208ENST00000508604 EPHB2P29323 1055 aa3.96□□□□□ -1.78
NUP54-208ENST00000508604 CCT8P50990 548 aa3.96□□□□□ -1.78
NUP54-208ENST00000508604 PLCD1P51178 756 aa3.96□□□□□ -1.78
NUP54-208ENST00000508604 ETFDHQ16134 617 aa3.96□□□□□ -1.78
NUP54-208ENST00000508604 PABPC1LQ4VXU2 614 aaKnown RBP3.96□□□□□ -1.78
NUP54-208ENST00000508604 SLC44A4Q53GD3 710 aa3.96□□□□□ -1.78
NUP54-208ENST00000508604 KIAA0907Q7Z7F0 614 aaPredicted RBP3.96□□□□□ -1.78
NUP54-208ENST00000508604 RHOT1Q8IXI2 618 aa3.96□□□□□ -1.78
NUP54-208ENST00000508604 CMIPQ8IY22 773 aa3.96□□□□□ -1.78
NUP54-208ENST00000508604 ZGPATQ8N5A5 531 aaKnown RBP3.96□□□□□ -1.78
NUP54-208ENST00000508604 CAMKK1Q8N5S9 505 aa3.96□□□□□ -1.78
NUP54-208ENST00000508604 PACSIN1Q9BY11 444 aa3.96□□□□□ -1.78
NUP54-208ENST00000508604 ADAM21Q9UKJ8 722 aa3.96□□□□□ -1.78
NUP54-208ENST00000508604 PCDHB1Q9Y5F3 818 aa3.96□□□□□ -1.78
NUP54-208ENST00000508604 E7ENX8 843 aa3.95□□□□□ -1.78
NUP54-208ENST00000508604 TRIM38O00635 465 aa3.95□□□□□ -1.78
NUP54-208ENST00000508604 HNRNPCP07910 306 aaKnown RBP eCLIP3.95□□□□□ -1.78
NUP54-208ENST00000508604 POU3F3P20264 500 aaPredicted RBP3.95□□□□□ -1.78
NUP54-208ENST00000508604 ATP8B2P98198 1209 aa3.95□□□□□ -1.78
NUP54-208ENST00000508604 TAP2Q03519 686 aa3.95□□□□□ -1.78
NUP54-208ENST00000508604 ZNF782Q6ZMW2 699 aaPredicted RBP3.95□□□□□ -1.78
NUP54-208ENST00000508604 NEK8Q86SG6 692 aa3.95□□□□□ -1.78
NUP54-208ENST00000508604 CTTNBP2NLQ9P2B4 639 aa3.95□□□□□ -1.78
NUP54-208ENST00000508604 SAP30BPQ9UHR5 308 aaKnown RBP3.95□□□□□ -1.78
NUP54-208ENST00000508604 BTBD3Q9Y2F9 522 aa3.95□□□□□ -1.78
NUP54-208ENST00000508604 TARM1B6A8C7 271 aa3.94□□□□□ -1.78
NUP54-208ENST00000508604 GRM6O15303 877 aa3.94□□□□□ -1.78
NUP54-208ENST00000508604 TRIAP1O43715 76 aa3.94□□□□□ -1.78
NUP54-208ENST00000508604 MOSPD3O75425 235 aa3.94□□□□□ -1.78
NUP54-208ENST00000508604 SUN1O94901 812 aa3.94□□□□□ -1.78
NUP54-208ENST00000508604 EBLN1P0CF75 366 aa3.94□□□□□ -1.78
NUP54-208ENST00000508604 NR2F6P10588 404 aa3.94□□□□□ -1.78
NUP54-208ENST00000508604 OSMP13725 252 aa3.94□□□□□ -1.78
NUP54-208ENST00000508604 NPTX2P47972 431 aa3.94□□□□□ -1.78
NUP54-208ENST00000508604 FHL1Q13642 323 aa3.94□□□□□ -1.78
NUP54-208ENST00000508604 KLF9Q13886 244 aaPredicted RBP3.94□□□□□ -1.78
NUP54-208ENST00000508604 CEP85Q6P2H3 762 aa3.94□□□□□ -1.78
NUP54-208ENST00000508604 YTHDF3Q7Z739 585 aaKnown RBP3.94□□□□□ -1.78
NUP54-208ENST00000508604 AHCYL2Q96HN2 611 aaKnown RBP3.94□□□□□ -1.78
NUP54-208ENST00000508604 SMOQ99835 787 aa3.94□□□□□ -1.78
NUP54-208ENST00000508604 IMPG2Q9BZV3 1241 aa3.94□□□□□ -1.78
NUP54-208ENST00000508604 TDP1Q9NUW8 608 aa3.94□□□□□ -1.78
NUP54-208ENST00000508604 C14orf119Q9NWQ9 140 aa3.94□□□□□ -1.78
NUP54-208ENST00000508604 EHD3Q9NZN3 535 aa3.94□□□□□ -1.78
NUP54-208ENST00000508604 MRPL42Q9Y6G3 142 aaKnown RBP3.94□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms