RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 FAM83AQ86UY5 434 aa17.18■□□□□ 0.34
CCDC88B-209ENST00000494080 RASSF3Q86WH2 238 aa17.18■□□□□ 0.34
CCDC88B-209ENST00000494080 KCTD17Q8N5Z5 321 aa17.18■□□□□ 0.34
CCDC88B-209ENST00000494080 TRIML2Q8N7C3 387 aa17.18■□□□□ 0.34
CCDC88B-209ENST00000494080 CCDC124Q96CT7 223 aaKnown RBP17.18■□□□□ 0.34
CCDC88B-209ENST00000494080 FAM118BQ9BPY3 351 aa17.18■□□□□ 0.34
CCDC88B-209ENST00000494080 ROPN1BQ9BZX4 212 aaPredicted RBP17.18■□□□□ 0.34
CCDC88B-209ENST00000494080 ROPN1Q9HAT0 212 aaPredicted RBP17.18■□□□□ 0.34
CCDC88B-209ENST00000494080 TMEM8AQ9HCN3 771 aa17.18■□□□□ 0.34
CCDC88B-209ENST00000494080 STRIP2Q9ULQ0 834 aa17.18■□□□□ 0.34
CCDC88B-209ENST00000494080 INPP5FQ9Y2H2 1132 aa17.18■□□□□ 0.34
CCDC88B-209ENST00000494080 AGPSO00116 658 aa17.18■□□□□ 0.34
CCDC88B-209ENST00000494080 CCDC22O60826 627 aa17.18■□□□□ 0.34
CCDC88B-209ENST00000494080 FGRP09769 529 aa17.18■□□□□ 0.34
CCDC88B-209ENST00000494080 NPTX2P47972 431 aa17.18■□□□□ 0.34
CCDC88B-209ENST00000494080 KCNMA1Q12791 1236 aa17.18■□□□□ 0.34
CCDC88B-209ENST00000494080 MAPK7Q13164 816 aa17.18■□□□□ 0.34
CCDC88B-209ENST00000494080 ARMCX2Q7L311 632 aa17.18■□□□□ 0.34
CCDC88B-209ENST00000494080 ZBED8Q8IZ13 594 aa17.18■□□□□ 0.34
CCDC88B-209ENST00000494080 TRAIPQ9BWF2 469 aa17.18■□□□□ 0.34
CCDC88B-209ENST00000494080 TMEM117Q9H0C3 514 aa17.18■□□□□ 0.34
CCDC88B-209ENST00000494080 WEE2P0C1S8 567 aa17.18■□□□□ 0.34
CCDC88B-209ENST00000494080 KCNA1Q09470 495 aa17.18■□□□□ 0.34
CCDC88B-209ENST00000494080 TMEM119Q4V9L6 283 aa17.18■□□□□ 0.34
CCDC88B-209ENST00000494080 OTOP1Q7RTM1 612 aa17.18■□□□□ 0.34
CCDC88B-209ENST00000494080 ZNF384Q8TF68 577 aa17.18■□□□□ 0.34
CCDC88B-209ENST00000494080 CDKL2Q92772 493 aa17.18■□□□□ 0.34
CCDC88B-209ENST00000494080 GPRASP2Q96D09 838 aa17.18■□□□□ 0.34
CCDC88B-209ENST00000494080 ANLNQ9NQW6 1124 aa17.18■□□□□ 0.34
CCDC88B-209ENST00000494080 DISP2A7MBM2 1401 aa17.18■□□□□ 0.34
CCDC88B-209ENST00000494080 TMC3Q7Z5M5 1100 aa17.17■□□□□ 0.34
CCDC88B-209ENST00000494080 GABPB2Q8TAK5 448 aaPredicted RBP17.17■□□□□ 0.34
CCDC88B-209ENST00000494080 ACTRT1Q8TDG2 376 aa17.17■□□□□ 0.34
CCDC88B-209ENST00000494080 GLIS2Q9BZE0 524 aaPredicted RBP17.17■□□□□ 0.34
CCDC88B-209ENST00000494080 TSPYL2Q9H2G4 693 aaPredicted RBP17.17■□□□□ 0.34
CCDC88B-209ENST00000494080 SEMA4AQ9H3S1 761 aa17.17■□□□□ 0.34
CCDC88B-209ENST00000494080 CYP26B1Q9NR63 512 aa17.17■□□□□ 0.34
CCDC88B-209ENST00000494080 MCM8Q9UJA3 840 aa17.17■□□□□ 0.34
CCDC88B-209ENST00000494080 AGAP1Q9UPQ3 857 aa17.17■□□□□ 0.34
CCDC88B-209ENST00000494080 IQANK1A0A1B0GTG1 560 aa17.17■□□□□ 0.34
CCDC88B-209ENST00000494080 TMEM253P0C7T8 217 aa17.17■□□□□ 0.34
CCDC88B-209ENST00000494080 PBX1P40424 430 aa17.17■□□□□ 0.34
CCDC88B-209ENST00000494080 NOP14P78316 857 aaKnown RBP17.17■□□□□ 0.34
CCDC88B-209ENST00000494080 GPS1Q13098 491 aa17.17■□□□□ 0.34
CCDC88B-209ENST00000494080 TRIM72Q6ZMU5 477 aa17.17■□□□□ 0.34
CCDC88B-209ENST00000494080 SLC26A7Q8TE54 656 aa17.17■□□□□ 0.34
CCDC88B-209ENST00000494080 CARD9Q9H257 536 aa17.17■□□□□ 0.34
CCDC88B-209ENST00000494080 IP6K2Q9UHH9 426 aa17.17■□□□□ 0.34
CCDC88B-209ENST00000494080 KLRC4O43908 158 aa17.17■□□□□ 0.34
CCDC88B-209ENST00000494080 ANXA13P27216 316 aa17.17■□□□□ 0.34
CCDC88B-209ENST00000494080 IFI35P80217 286 aaPredicted RBP17.17■□□□□ 0.34
CCDC88B-209ENST00000494080 LAMB3Q13751 1172 aa17.17■□□□□ 0.34
CCDC88B-209ENST00000494080 CRLF3Q8IUI8 442 aa17.17■□□□□ 0.34
CCDC88B-209ENST00000494080 CFAP36Q96G28 342 aa17.17■□□□□ 0.34
CCDC88B-209ENST00000494080 XRN1Q8IZH2 1706 aaKnown RBP17.17■□□□□ 0.34
CCDC88B-209ENST00000494080 COPEO14579 308 aa17.16■□□□□ 0.34
CCDC88B-209ENST00000494080 CFLARO15519 480 aa17.16■□□□□ 0.34
CCDC88B-209ENST00000494080 ASAP2O43150 1006 aa17.16■□□□□ 0.34
CCDC88B-209ENST00000494080 PGK2P07205 417 aa17.16■□□□□ 0.34
CCDC88B-209ENST00000494080 MX2P20592 715 aa17.16■□□□□ 0.34
CCDC88B-209ENST00000494080 VHLP40337 213 aa17.16■□□□□ 0.34
CCDC88B-209ENST00000494080 KDSRQ06136 332 aa17.16■□□□□ 0.34
CCDC88B-209ENST00000494080 RABGAP1LQ5R372 815 aa17.16■□□□□ 0.34
CCDC88B-209ENST00000494080 ANKRD20A2Q5SQ80 823 aa17.16■□□□□ 0.34
CCDC88B-209ENST00000494080 ANKRD20A1Q5TYW2 823 aa17.16■□□□□ 0.34
CCDC88B-209ENST00000494080 KRT80Q6KB66 452 aa17.16■□□□□ 0.34
CCDC88B-209ENST00000494080 ZNF571Q7Z3V5 609 aaPredicted RBP17.16■□□□□ 0.34
CCDC88B-209ENST00000494080 METTL23Q86XA0 190 aa17.16■□□□□ 0.34
CCDC88B-209ENST00000494080 IQCKQ8N0W5 287 aa17.16■□□□□ 0.34
CCDC88B-209ENST00000494080 ABCF3Q9NUQ8 709 aa17.16■□□□□ 0.34
CCDC88B-209ENST00000494080 ZNF711Q9Y462 761 aa17.16■□□□□ 0.34
CCDC88B-209ENST00000494080 DYNC1LI2O43237 492 aaPredicted RBP17.16■□□□□ 0.34
CCDC88B-209ENST00000494080 HUS1O60921 280 aa17.16■□□□□ 0.34
CCDC88B-209ENST00000494080 ESRRGP62508 458 aa17.16■□□□□ 0.34
CCDC88B-209ENST00000494080 DEUP1Q05D60 604 aa17.16■□□□□ 0.34
CCDC88B-209ENST00000494080 MXD4Q14582 209 aaPredicted RBP17.16■□□□□ 0.34
CCDC88B-209ENST00000494080 RCN1Q15293 331 aa17.16■□□□□ 0.34
CCDC88B-209ENST00000494080 MORC4Q8TE76 937 aa17.16■□□□□ 0.34
CCDC88B-209ENST00000494080 PPWD1Q96BP3 646 aaKnown RBP17.16■□□□□ 0.34
CCDC88B-209ENST00000494080 TTC25Q96NG3 672 aa17.16■□□□□ 0.34
CCDC88B-209ENST00000494080 PARVAQ9NVD7 372 aa17.16■□□□□ 0.34
CCDC88B-209ENST00000494080 PCDHB2Q9Y5E7 798 aa17.16■□□□□ 0.34
CCDC88B-209ENST00000494080 MEIS2O14770 477 aa17.16■□□□□ 0.34
CCDC88B-209ENST00000494080 CRCPO75575 148 aa17.16■□□□□ 0.34
CCDC88B-209ENST00000494080 SDC4P31431 198 aa17.16■□□□□ 0.34
CCDC88B-209ENST00000494080 TCF7P36402 384 aaPredicted RBP17.16■□□□□ 0.34
CCDC88B-209ENST00000494080 C18orf8Q96DM3 657 aa17.16■□□□□ 0.34
CCDC88B-209ENST00000494080 DTNBP1Q96EV8 351 aa17.16■□□□□ 0.34
CCDC88B-209ENST00000494080 LRGUKQ96M69 825 aa17.16■□□□□ 0.34
CCDC88B-209ENST00000494080 SMARCAD1Q9H4L7 1026 aa17.16■□□□□ 0.34
CCDC88B-209ENST00000494080 GGA2Q9UJY4 613 aa17.16■□□□□ 0.34
CCDC88B-209ENST00000494080 A8MXQ7 604 aa17.16■□□□□ 0.34
CCDC88B-209ENST00000494080 OATP04181 439 aa17.16■□□□□ 0.34
CCDC88B-209ENST00000494080 ZCCHC18P0CG32 403 aa17.16■□□□□ 0.34
CCDC88B-209ENST00000494080 PDIA2Q13087 525 aaKnown RBP17.16■□□□□ 0.34
CCDC88B-209ENST00000494080 ATG16L1Q676U5 607 aa17.16■□□□□ 0.34
CCDC88B-209ENST00000494080 XRRA1Q6P2D8 792 aa17.16■□□□□ 0.34
CCDC88B-209ENST00000494080 ELMO3Q96BJ8 720 aa17.16■□□□□ 0.34
CCDC88B-209ENST00000494080 FAF2Q96CS3 445 aa17.16■□□□□ 0.34
CCDC88B-209ENST00000494080 RBM15Q96T37 977 aaKnown RBP eCLIP17.16■□□□□ 0.344e-6■■■□□ 14.7
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms