RNA–Protein interactions for RNA: ENST00000493475.2

COL6A3-213, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 669 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-213ENST00000493475 ITIH5Q86UX2 942 aa12.6□□□□□ -0.39
COL6A3-213ENST00000493475 DAW1Q8N136 415 aa12.6□□□□□ -0.39
COL6A3-213ENST00000493475 TMEM161BQ8NDZ6 487 aa12.6□□□□□ -0.39
COL6A3-213ENST00000493475 BEST2Q8NFU1 509 aa12.6□□□□□ -0.39
COL6A3-213ENST00000493475 CSGALNACT1Q8TDX6 532 aa12.6□□□□□ -0.39
COL6A3-213ENST00000493475 DDX12PQ92771 950 aa12.6□□□□□ -0.39
COL6A3-213ENST00000493475 SMARCD2Q92925 531 aa12.6□□□□□ -0.39
COL6A3-213ENST00000493475 GCNAQ96QF7 691 aa12.6□□□□□ -0.39
COL6A3-213ENST00000493475 RPP25Q9BUL9 199 aaKnown RBP12.6□□□□□ -0.39
COL6A3-213ENST00000493475 RPF1Q9H9Y2 349 aaKnown RBP12.6□□□□□ -0.39
COL6A3-213ENST00000493475 ZSCAN32Q9NX65 697 aa12.6□□□□□ -0.39
COL6A3-213ENST00000493475 ZSCAN21Q9Y5A6 473 aaPredicted RBP12.6□□□□□ -0.39
COL6A3-213ENST00000493475 DOCK8Q8NF50 2099 aa12.59□□□□□ -0.39
COL6A3-213ENST00000493475 SFI1A8K8P3 1242 aa12.59□□□□□ -0.39
COL6A3-213ENST00000493475 PP2D1A8MPX8 630 aa12.59□□□□□ -0.39
COL6A3-213ENST00000493475 DPYSL4O14531 572 aa12.59□□□□□ -0.39
COL6A3-213ENST00000493475 ZNF263O14978 683 aa12.59□□□□□ -0.39
COL6A3-213ENST00000493475 ODC1P11926 461 aa12.59□□□□□ -0.39
COL6A3-213ENST00000493475 MYL4P12829 197 aa12.59□□□□□ -0.39
COL6A3-213ENST00000493475 CEBPBP17676 345 aa12.59□□□□□ -0.39
COL6A3-213ENST00000493475 CDC25AP30304 524 aa12.59□□□□□ -0.39
COL6A3-213ENST00000493475 TOB1P50616 345 aaPredicted RBP12.59□□□□□ -0.39
COL6A3-213ENST00000493475 SOX4Q06945 474 aaPredicted RBP12.59□□□□□ -0.39
COL6A3-213ENST00000493475 RAD51AP2Q09MP3 1159 aa12.59□□□□□ -0.39
COL6A3-213ENST00000493475 TWF1Q12792 350 aa12.59□□□□□ -0.39
COL6A3-213ENST00000493475 MAPK7Q13164 816 aa12.59□□□□□ -0.39
COL6A3-213ENST00000493475 MRPL58Q14197 206 aaKnown RBP12.59□□□□□ -0.39
COL6A3-213ENST00000493475 PUM1Q14671 1186 aaKnown RBP eCLIP12.59□□□□□ -0.39
COL6A3-213ENST00000493475 VEPH1Q14D04 833 aa12.59□□□□□ -0.39
COL6A3-213ENST00000493475 TAF12Q16514 161 aa12.59□□□□□ -0.39
COL6A3-213ENST00000493475 ARHGAP15Q53QZ3 475 aa12.59□□□□□ -0.39
COL6A3-213ENST00000493475 DGLUCYQ7Z3D6 616 aa12.59□□□□□ -0.39
COL6A3-213ENST00000493475 KIAA2013Q8IYS2 634 aa12.59□□□□□ -0.39
COL6A3-213ENST00000493475 ST13P5Q8NFI4 369 aaPredicted RBP12.59□□□□□ -0.39
COL6A3-213ENST00000493475 C18orf25Q96B23 403 aaPredicted RBP12.59□□□□□ -0.39
COL6A3-213ENST00000493475 ZMAT2Q96NC0 199 aaKnown RBP12.59□□□□□ -0.39
COL6A3-213ENST00000493475 CXCL16Q9H2A7 254 aa12.59□□□□□ -0.39
COL6A3-213ENST00000493475 PARVGQ9HBI0 331 aa12.59□□□□□ -0.39
COL6A3-213ENST00000493475 TRPV5Q9NQA5 729 aa12.59□□□□□ -0.39
COL6A3-213ENST00000493475 ASB3Q9Y575 518 aa12.59□□□□□ -0.39
COL6A3-213ENST00000493475 EP300Q09472 2414 aaPredicted RBP12.58□□□□□ -0.4
COL6A3-213ENST00000493475 K7ENM7 598 aa12.58□□□□□ -0.4
COL6A3-213ENST00000493475 TBC1D4O60343 1298 aa12.58□□□□□ -0.4
COL6A3-213ENST00000493475 OAZ2O95190 189 aa12.58□□□□□ -0.4
COL6A3-213ENST00000493475 CENPBP07199 599 aaPredicted RBP12.58□□□□□ -0.4
COL6A3-213ENST00000493475 CXCL8P10145 99 aa12.58□□□□□ -0.4
COL6A3-213ENST00000493475 LRPAP1P30533 357 aa12.58□□□□□ -0.4
COL6A3-213ENST00000493475 EMP3P54852 163 aa12.58□□□□□ -0.4
COL6A3-213ENST00000493475 MYBPC2Q14324 1141 aa12.58□□□□□ -0.4
COL6A3-213ENST00000493475 LRRC32Q14392 662 aa12.58□□□□□ -0.4
COL6A3-213ENST00000493475 PTPAQ15257 358 aa12.58□□□□□ -0.4
COL6A3-213ENST00000493475 SLC5A9Q2M3M2 681 aa12.58□□□□□ -0.4
COL6A3-213ENST00000493475 SLC10A6Q3KNW5 377 aa12.58□□□□□ -0.4
COL6A3-213ENST00000493475 PRSS36Q5K4E3 855 aa12.58□□□□□ -0.4
COL6A3-213ENST00000493475 METTL23Q86XA0 190 aa12.58□□□□□ -0.4
COL6A3-213ENST00000493475 MYCT1Q8N699 235 aa12.58□□□□□ -0.4
COL6A3-213ENST00000493475 ASB16Q96NS5 453 aa12.58□□□□□ -0.4
COL6A3-213ENST00000493475 ZHX3Q9H4I2 956 aa12.58□□□□□ -0.4
COL6A3-213ENST00000493475 HEBP1Q9NRV9 189 aa12.58□□□□□ -0.4
COL6A3-213ENST00000493475 ZMYM5Q9UJ78 669 aa12.58□□□□□ -0.4
COL6A3-213ENST00000493475 GMEB2Q9UKD1 530 aa12.58□□□□□ -0.4
COL6A3-213ENST00000493475 DSEQ9UL01 958 aa12.58□□□□□ -0.4
COL6A3-213ENST00000493475 SMC3Q9UQE7 1217 aa12.58□□□□□ -0.4
COL6A3-213ENST00000493475 VPS13AQ96RL7 3174 aa12.58□□□□□ -0.4
COL6A3-213ENST00000493475 ZNF292O60281 2723 aa12.57□□□□□ -0.4
COL6A3-213ENST00000493475 M0QZQ0 153 aa12.57□□□□□ -0.4
COL6A3-213ENST00000493475 OGTO15294 1046 aa12.57□□□□□ -0.4
COL6A3-213ENST00000493475 TYMPP19971 482 aa12.57□□□□□ -0.4
COL6A3-213ENST00000493475 GDI1P31150 447 aa12.57□□□□□ -0.4
COL6A3-213ENST00000493475 LONP1P36776 959 aaKnown RBP12.57□□□□□ -0.4
COL6A3-213ENST00000493475 TXLNAP40222 546 aa12.57□□□□□ -0.4
COL6A3-213ENST00000493475 CCR3P51677 355 aa12.57□□□□□ -0.4
COL6A3-213ENST00000493475 SLC12A3P55017 1021 aa12.57□□□□□ -0.4
COL6A3-213ENST00000493475 NCKAP1LP55160 1127 aa12.57□□□□□ -0.4
COL6A3-213ENST00000493475 MLLT6P55198 1093 aaPredicted RBP12.57□□□□□ -0.4
COL6A3-213ENST00000493475 SMARCB1Q12824 385 aa12.57□□□□□ -0.4
COL6A3-213ENST00000493475 FAM78AQ5JUQ0 283 aa12.57□□□□□ -0.4
COL6A3-213ENST00000493475 TANGO2Q6ICL3 276 aa12.57□□□□□ -0.4
COL6A3-213ENST00000493475 OVOS1Q6IE37 1185 aa12.57□□□□□ -0.4
COL6A3-213ENST00000493475 SLFN12LQ6IEE8 588 aa12.57□□□□□ -0.4
COL6A3-213ENST00000493475 CD300LGQ6UXG3 332 aa12.57□□□□□ -0.4
COL6A3-213ENST00000493475 TAS1R3Q7RTX0 852 aa12.57□□□□□ -0.4
COL6A3-213ENST00000493475 BRAPQ7Z569 592 aa12.57□□□□□ -0.4
COL6A3-213ENST00000493475 GPBP1Q86WP2 473 aa12.57□□□□□ -0.4
COL6A3-213ENST00000493475 THEM5Q8N1Q8 247 aa12.57□□□□□ -0.4
COL6A3-213ENST00000493475 KRI1Q8N9T8 703 aaKnown RBP12.57□□□□□ -0.4
COL6A3-213ENST00000493475 ZSCAN18Q8TBC5 510 aaPredicted RBP12.57□□□□□ -0.4
COL6A3-213ENST00000493475 FAM3CQ92520 227 aa12.57□□□□□ -0.4
COL6A3-213ENST00000493475 CLDN23Q96B33 292 aa12.57□□□□□ -0.4
COL6A3-213ENST00000493475 ZBTB45Q96K62 511 aaPredicted RBP12.57□□□□□ -0.4
COL6A3-213ENST00000493475 HS3ST6Q96QI5 342 aa12.57□□□□□ -0.4
COL6A3-213ENST00000493475 MMTAG2Q9BU76 263 aaKnown RBP12.57□□□□□ -0.4
COL6A3-213ENST00000493475 MSTO1Q9BUK6 570 aa12.57□□□□□ -0.4
COL6A3-213ENST00000493475 C8orf33Q9H7E9 229 aaPredicted RBP12.57□□□□□ -0.4
COL6A3-213ENST00000493475 HSFX1Q9UBD0 423 aa12.57□□□□□ -0.4
COL6A3-213ENST00000493475 TUBGCP4Q9UGJ1 667 aa12.57□□□□□ -0.4
COL6A3-213ENST00000493475 TBX20Q9UMR3 447 aa12.57□□□□□ -0.4
COL6A3-213ENST00000493475 DERAQ9Y315 318 aa12.57□□□□□ -0.4
COL6A3-213ENST00000493475 YIPF1Q9Y548 306 aa12.57□□□□□ -0.4
COL6A3-213ENST00000493475 TTC26A0AVF1 554 aa12.56□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms