RNA–Protein interactions for RNA: ENST00000489862.1

DEPDC1-204, Transcript of DEP domain containing 1, humanhuman

TSL 1 (best)

Gene DEPDC1, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC1-204ENST00000489862 PRAMEF4O60810 478 aa3.84□□□□□ -1.8
DEPDC1-204ENST00000489862 SETSIPP0DME0 302 aa3.84□□□□□ -1.8
DEPDC1-204ENST00000489862 ZFP36P26651 326 aaKnown RBP3.84□□□□□ -1.8
DEPDC1-204ENST00000489862 IL6STP40189 918 aaPredicted RBP3.84□□□□□ -1.8
DEPDC1-204ENST00000489862 TERF1P54274 439 aa3.84□□□□□ -1.8
DEPDC1-204ENST00000489862 KLF1Q13351 362 aaPredicted RBP3.84□□□□□ -1.8
DEPDC1-204ENST00000489862 CHST15Q7LFX5 561 aaPredicted RBP3.84□□□□□ -1.8
DEPDC1-204ENST00000489862 CATIPQ7Z7H3 387 aa3.84□□□□□ -1.8
DEPDC1-204ENST00000489862 RASSF3Q86WH2 238 aa3.84□□□□□ -1.8
DEPDC1-204ENST00000489862 GLB1L2Q8IW92 636 aa3.84□□□□□ -1.8
DEPDC1-204ENST00000489862 FAM186BQ8IYM0 893 aa3.84□□□□□ -1.8
DEPDC1-204ENST00000489862 SYNE4Q8N205 404 aa3.84□□□□□ -1.8
DEPDC1-204ENST00000489862 GLB1L3Q8NCI6 653 aaPredicted RBP3.84□□□□□ -1.8
DEPDC1-204ENST00000489862 OR14C36Q8NHC7 312 aa3.84□□□□□ -1.8
DEPDC1-204ENST00000489862 LENG9Q96B70 501 aa3.84□□□□□ -1.8
DEPDC1-204ENST00000489862 HSPBAP1Q96EW2 488 aa3.84□□□□□ -1.8
DEPDC1-204ENST00000489862 SGCZQ96LD1 299 aa3.84□□□□□ -1.8
DEPDC1-204ENST00000489862 NELL2Q99435 816 aa3.84□□□□□ -1.8
DEPDC1-204ENST00000489862 ACO2Q99798 780 aaKnown RBP3.84□□□□□ -1.8
DEPDC1-204ENST00000489862 PDCD2LQ9BRP1 358 aa3.84□□□□□ -1.8
DEPDC1-204ENST00000489862 LRRC27Q9C0I9 530 aa3.84□□□□□ -1.8
DEPDC1-204ENST00000489862 EIF2B4Q9UI10 523 aaKnown RBP3.84□□□□□ -1.8
DEPDC1-204ENST00000489862 FZD1Q9UP38 647 aa3.84□□□□□ -1.8
DEPDC1-204ENST00000489862 HDAC5Q9UQL6 1122 aa3.84□□□□□ -1.8
DEPDC1-204ENST00000489862 APOBEC2Q9Y235 224 aaKnown RBP3.84□□□□□ -1.8
DEPDC1-204ENST00000489862 SPEF1Q9Y4P9 236 aa3.84□□□□□ -1.8
DEPDC1-204ENST00000489862 COX11Q9Y6N1 276 aa3.84□□□□□ -1.8
DEPDC1-204ENST00000489862 ZMYM3Q14202 1370 aa3.83□□□□□ -1.8
DEPDC1-204ENST00000489862 AHRRA9YTQ3 701 aa3.83□□□□□ -1.8
DEPDC1-204ENST00000489862 LEFTY2O00292 366 aa3.83□□□□□ -1.8
DEPDC1-204ENST00000489862 TMEM127O75204 238 aa3.83□□□□□ -1.8
DEPDC1-204ENST00000489862 RECQL4O94761 1208 aa3.83□□□□□ -1.8
DEPDC1-204ENST00000489862 LTA4HP09960 611 aaKnown RBP3.83□□□□□ -1.8
DEPDC1-204ENST00000489862 CCND1P24385 295 aa3.83□□□□□ -1.8
DEPDC1-204ENST00000489862 APOBEC3AP31941 199 aaPredicted RBP3.83□□□□□ -1.8
DEPDC1-204ENST00000489862 CYP2C19P33261 490 aa3.83□□□□□ -1.8
DEPDC1-204ENST00000489862 ZEB1P37275 1124 aaPredicted RBP3.83□□□□□ -1.8
DEPDC1-204ENST00000489862 RECQLP46063 649 aaPredicted RBP3.83□□□□□ -1.8
DEPDC1-204ENST00000489862 LGALS4P56470 323 aa3.83□□□□□ -1.8
DEPDC1-204ENST00000489862 WNT3AP56704 352 aa3.83□□□□□ -1.8
DEPDC1-204ENST00000489862 FAM189BP81408 668 aa3.83□□□□□ -1.8
DEPDC1-204ENST00000489862 POU5F1Q01860 360 aaKnown RBP3.83□□□□□ -1.8
DEPDC1-204ENST00000489862 APBA1Q02410 837 aa3.83□□□□□ -1.8
DEPDC1-204ENST00000489862 GTF2H3Q13889 308 aa3.83□□□□□ -1.8
DEPDC1-204ENST00000489862 ELF2Q15723 593 aa3.83□□□□□ -1.8
DEPDC1-204ENST00000489862 METTL24Q5JXM2 366 aa3.83□□□□□ -1.8
DEPDC1-204ENST00000489862 TMEM240Q5SV17 173 aa3.83□□□□□ -1.8
DEPDC1-204ENST00000489862 MBNL2Q5VZF2 373 aaKnown RBP3.83□□□□□ -1.8
DEPDC1-204ENST00000489862 ANKS6Q68DC2 871 aa3.83□□□□□ -1.8
DEPDC1-204ENST00000489862 PDXDC1Q6P996 788 aa3.83□□□□□ -1.8
DEPDC1-204ENST00000489862 PGM2L1Q6PCE3 622 aa3.83□□□□□ -1.8
DEPDC1-204ENST00000489862 MMS22LQ6ZRQ5 1243 aa3.83□□□□□ -1.8
DEPDC1-204ENST00000489862 DOK3Q7L591 496 aa3.83□□□□□ -1.8
DEPDC1-204ENST00000489862 LILRA3Q8N6C8 439 aaPredicted RBP3.83□□□□□ -1.8
DEPDC1-204ENST00000489862 ZBTB34Q8NCN2 500 aa3.83□□□□□ -1.8
DEPDC1-204ENST00000489862 FAM156AQ8NDB6 213 aa3.83□□□□□ -1.8
DEPDC1-204ENST00000489862 PPHLN1Q8NEY8 458 aaKnown RBP3.83□□□□□ -1.8
DEPDC1-204ENST00000489862 PPP1R35Q8TAP8 253 aa3.83□□□□□ -1.8
DEPDC1-204ENST00000489862 PROKR1Q8TCW9 393 aa3.83□□□□□ -1.8
DEPDC1-204ENST00000489862 SCARB1Q8WTV0 552 aa3.83□□□□□ -1.8
DEPDC1-204ENST00000489862 EAF2Q96CJ1 260 aaPredicted RBP3.83□□□□□ -1.8
DEPDC1-204ENST00000489862 AHCYL2Q96HN2 611 aaKnown RBP3.83□□□□□ -1.8
DEPDC1-204ENST00000489862 AIFM3Q96NN9 605 aa3.83□□□□□ -1.8
DEPDC1-204ENST00000489862 FAM193BQ96PV7 902 aaPredicted RBP3.83□□□□□ -1.8
DEPDC1-204ENST00000489862 KCNH6Q9H252 994 aa3.83□□□□□ -1.8
DEPDC1-204ENST00000489862 KCTD10Q9H3F6 313 aa3.83□□□□□ -1.8
DEPDC1-204ENST00000489862 SPON1Q9HCB6 807 aa3.83□□□□□ -1.8
DEPDC1-204ENST00000489862 POLHQ9Y253 713 aa3.83□□□□□ -1.8
DEPDC1-204ENST00000489862 RPGRIP1LQ68CZ1 1315 aa3.83□□□□□ -1.8
DEPDC1-204ENST00000489862 ABHD16AO95870 558 aa3.82□□□□□ -1.8
DEPDC1-204ENST00000489862 ITGB1P05556 798 aa3.82□□□□□ -1.8
DEPDC1-204ENST00000489862 GYPEP15421 78 aa3.82□□□□□ -1.8
DEPDC1-204ENST00000489862 CHKAP35790 457 aa3.82□□□□□ -1.8
DEPDC1-204ENST00000489862 TM4SF4P48230 202 aa3.82□□□□□ -1.8
DEPDC1-204ENST00000489862 GPATCH4Q5T3I0 446 aaKnown RBP3.82□□□□□ -1.8
DEPDC1-204ENST00000489862 L1TD1Q5T7N2 865 aaKnown RBP3.82□□□□□ -1.8
DEPDC1-204ENST00000489862 JAKMIP3Q5VZ66 844 aa3.82□□□□□ -1.8
DEPDC1-204ENST00000489862 LRRC55Q6ZSA7 311 aa3.82□□□□□ -1.8
DEPDC1-204ENST00000489862 OVCH2Q7RTZ1 564 aa3.82□□□□□ -1.8
DEPDC1-204ENST00000489862 GPRIN1Q7Z2K8 1008 aa3.82□□□□□ -1.8
DEPDC1-204ENST00000489862 MAATS1Q7Z4T9 603 aa3.82□□□□□ -1.8
DEPDC1-204ENST00000489862 PNMA8AQ86V59 439 aaPredicted RBP3.82□□□□□ -1.8
DEPDC1-204ENST00000489862 ZNF354CQ86Y25 554 aa3.82□□□□□ -1.8
DEPDC1-204ENST00000489862 CCDC89Q8N998 374 aa3.82□□□□□ -1.8
DEPDC1-204ENST00000489862 ABCF1Q8NE71 845 aaKnown RBP eCLIP3.82□□□□□ -1.8
DEPDC1-204ENST00000489862 SNX33Q8WV41 574 aa3.82□□□□□ -1.8
DEPDC1-204ENST00000489862 NDC1Q9BTX1 674 aa3.82□□□□□ -1.8
DEPDC1-204ENST00000489862 OSBPL5Q9H0X9 879 aaPredicted RBP3.82□□□□□ -1.8
DEPDC1-204ENST00000489862 WNT8AQ9H1J5 351 aa3.82□□□□□ -1.8
DEPDC1-204ENST00000489862 TOPORSQ9NS56 1045 aaPredicted RBP3.82□□□□□ -1.8
DEPDC1-204ENST00000489862 TRPM5Q9NZQ8 1165 aa3.82□□□□□ -1.8
DEPDC1-204ENST00000489862 CDC23Q9UJX2 597 aa3.82□□□□□ -1.8
DEPDC1-204ENST00000489862 CDY2AQ9Y6F7 541 aa3.82□□□□□ -1.8
DEPDC1-204ENST00000489862 TRIM24O15164 1050 aa3.81□□□□□ -1.8
DEPDC1-204ENST00000489862 LPXNO60711 386 aa3.81□□□□□ -1.8
DEPDC1-204ENST00000489862 ITGA10O75578 1167 aa3.81□□□□□ -1.8
DEPDC1-204ENST00000489862 IL33O95760 270 aa3.81□□□□□ -1.8
DEPDC1-204ENST00000489862 PYGLP06737 847 aa3.81□□□□□ -1.8
DEPDC1-204ENST00000489862 RBP3P10745 1247 aa3.81□□□□□ -1.8
DEPDC1-204ENST00000489862 ZKSCAN1P17029 563 aaPredicted RBP3.81□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms