RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 A1CFQ9NQ94 594 aaKnown RBP19.07■□□□□ 0.64
VIM-206ENST00000487938 CYP39A1Q9NYL5 469 aa19.07■□□□□ 0.64
VIM-206ENST00000487938 FBXO40Q9UH90 709 aa19.07■□□□□ 0.64
VIM-206ENST00000487938 ARID2Q68CP9 1835 aa19.06■□□□□ 0.64
VIM-206ENST00000487938 GH1P01241 217 aa19.06■□□□□ 0.64
VIM-206ENST00000487938 EDN1P05305 212 aa19.06■□□□□ 0.64
VIM-206ENST00000487938 SUPT20HL2P0C7V6 817 aa19.06■□□□□ 0.64
VIM-206ENST00000487938 KRT10P13645 584 aa19.06■□□□□ 0.64
VIM-206ENST00000487938 RPL7AP62424 266 aaKnown RBP19.06■□□□□ 0.64
VIM-206ENST00000487938 FSTL1Q12841 308 aa19.06■□□□□ 0.64
VIM-206ENST00000487938 SUPT20HL1Q3ZLR7 823 aa19.06■□□□□ 0.64
VIM-206ENST00000487938 IZUMO3Q5VZ72 239 aa19.06■□□□□ 0.64
VIM-206ENST00000487938 PARP9Q8IXQ6 854 aa19.06■□□□□ 0.64
VIM-206ENST00000487938 ZNF280CQ8ND82 737 aa19.06■□□□□ 0.64
VIM-206ENST00000487938 DEPTORQ8TB45 409 aa19.06■□□□□ 0.64
VIM-206ENST00000487938 FGFR1OP2Q9NVK5 253 aa19.06■□□□□ 0.64
VIM-206ENST00000487938 COL11A1P12107 1806 aaPredicted RBP19.06■□□□□ 0.64
VIM-206ENST00000487938 SPATA31C2B4DYI2 1134 aa19.05■□□□□ 0.64
VIM-206ENST00000487938 H0YCG3 227 aa19.05■□□□□ 0.64
VIM-206ENST00000487938 CAV1Q03135 178 aa19.05■□□□□ 0.64
VIM-206ENST00000487938 ENPEPQ07075 957 aa19.05■□□□□ 0.64
VIM-206ENST00000487938 PTP4A2Q12974 167 aa19.05■□□□□ 0.64
VIM-206ENST00000487938 DHX30Q7L2E3 1194 aaKnown RBP eCLIP19.05■□□□□ 0.64
VIM-206ENST00000487938 NSRP1Q9H0G5 558 aaKnown RBP19.05■□□□□ 0.64
VIM-206ENST00000487938 MRPL47Q9HD33 250 aaKnown RBP19.05■□□□□ 0.64
VIM-206ENST00000487938 ABCF3Q9NUQ8 709 aa19.05■□□□□ 0.64
VIM-206ENST00000487938 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP19.05■□□□□ 0.64
VIM-206ENST00000487938 STYXL1Q9Y6J8 313 aa19.05■□□□□ 0.64
VIM-206ENST00000487938 NFASCO94856 1347 aa19.05■□□□□ 0.64
VIM-206ENST00000487938 PSTPIP1O43586 416 aa19.05■□□□□ 0.64
VIM-206ENST00000487938 POTEJP0CG39 1038 aa19.05■□□□□ 0.64
VIM-206ENST00000487938 BRAFP15056 766 aa19.05■□□□□ 0.64
VIM-206ENST00000487938 XRCC4Q13426 336 aa19.05■□□□□ 0.64
VIM-206ENST00000487938 PLEKHA7Q6IQ23 1121 aa19.05■□□□□ 0.64
VIM-206ENST00000487938 TRPM8Q7Z2W7 1104 aa19.05■□□□□ 0.64
VIM-206ENST00000487938 KATNAL2Q8IYT4 538 aa19.05■□□□□ 0.64
VIM-206ENST00000487938 NAALADL1Q9UQQ1 740 aa19.05■□□□□ 0.64
VIM-206ENST00000487938 SNX3O60493 162 aa19.04■□□□□ 0.64
VIM-206ENST00000487938 DNAJC8O75937 253 aaPredicted RBP19.04■□□□□ 0.64
VIM-206ENST00000487938 CLTAP09496 248 aa19.04■□□□□ 0.64
VIM-206ENST00000487938 PTPRAP18433 802 aa19.04■□□□□ 0.64
VIM-206ENST00000487938 NOP14P78316 857 aaKnown RBP19.04■□□□□ 0.64
VIM-206ENST00000487938 P3H1Q32P28 736 aa19.04■□□□□ 0.64
VIM-206ENST00000487938 GLIS1Q8NBF1 620 aa19.04■□□□□ 0.64
VIM-206ENST00000487938 FEZF2Q8TBJ5 459 aa19.04■□□□□ 0.64
VIM-206ENST00000487938 SGSM3Q96HU1 749 aa19.04■□□□□ 0.64
VIM-206ENST00000487938 WRNIP1Q96S55 665 aa19.04■□□□□ 0.64
VIM-206ENST00000487938 ZNF302Q9NR11 478 aa19.04■□□□□ 0.64
VIM-206ENST00000487938 GINM1Q9NU53 330 aa19.04■□□□□ 0.64
VIM-206ENST00000487938 CST3P01034 146 aaPredicted RBP19.04■□□□□ 0.64
VIM-206ENST00000487938 TGFB2P61812 414 aa19.04■□□□□ 0.64
VIM-206ENST00000487938 NUGGCQ68CJ6 796 aa19.04■□□□□ 0.64
VIM-206ENST00000487938 PHF13Q86YI8 300 aaPredicted RBP19.04■□□□□ 0.64
VIM-206ENST00000487938 SCYL3Q8IZE3 742 aa19.04■□□□□ 0.64
VIM-206ENST00000487938 CCDC89Q8N998 374 aa19.04■□□□□ 0.64
VIM-206ENST00000487938 CDHR1Q96JP9 859 aa19.04■□□□□ 0.64
VIM-206ENST00000487938 PORCNQ9H237 461 aa19.04■□□□□ 0.64
VIM-206ENST00000487938 MYH9P35579 1960 aaKnown RBP19.03■□□□□ 0.64
VIM-206ENST00000487938 GSTTP1A0A1W2PQM5 241 aa19.03■□□□□ 0.64
VIM-206ENST00000487938 ZSCAN5DPP0CG00 497 aa19.03■□□□□ 0.64
VIM-206ENST00000487938 ATP5DP30049 168 aa19.03■□□□□ 0.64
VIM-206ENST00000487938 ZNF280AP59817 542 aaPredicted RBP19.03■□□□□ 0.64
VIM-206ENST00000487938 GNPTABQ3T906 1256 aa19.03■□□□□ 0.64
VIM-206ENST00000487938 DALRD3Q5D0E6 543 aaKnown RBP19.03■□□□□ 0.64
VIM-206ENST00000487938 HP1BP3Q5SSJ5 553 aaPredicted RBP19.03■□□□□ 0.64
VIM-206ENST00000487938 CYP4F22Q6NT55 531 aa19.03■□□□□ 0.64
VIM-206ENST00000487938 TRIM72Q6ZMU5 477 aa19.03■□□□□ 0.64
VIM-206ENST00000487938 FAM228AQ86W67 206 aa19.03■□□□□ 0.64
VIM-206ENST00000487938 MICALL2Q8IY33 904 aa19.03■□□□□ 0.64
VIM-206ENST00000487938 SRRM1Q8IYB3 904 aaKnown RBP19.03■□□□□ 0.64
VIM-206ENST00000487938 EXD1Q8NHP7 514 aa19.03■□□□□ 0.64
VIM-206ENST00000487938 ZNF606Q8WXB4 792 aa19.03■□□□□ 0.64
VIM-206ENST00000487938 PICK1Q9NRD5 415 aa19.03■□□□□ 0.64
VIM-206ENST00000487938 TTLL13PA6NNM8 815 aa19.03■□□□□ 0.64
VIM-206ENST00000487938 CHUKO15111 745 aa19.03■□□□□ 0.64
VIM-206ENST00000487938 PEX10O60683 326 aa19.03■□□□□ 0.64
VIM-206ENST00000487938 OATP04181 439 aa19.03■□□□□ 0.64
VIM-206ENST00000487938 ETS1P14921 441 aa19.03■□□□□ 0.64
VIM-206ENST00000487938 ATF7P17544 494 aaPredicted RBP19.03■□□□□ 0.64
VIM-206ENST00000487938 KLRC2P26717 231 aa19.03■□□□□ 0.64
VIM-206ENST00000487938 NFX1Q12986 1120 aaKnown RBP19.03■□□□□ 0.64
VIM-206ENST00000487938 NCOA4Q13772 614 aa19.03■□□□□ 0.64
VIM-206ENST00000487938 SNCBQ16143 134 aa19.03■□□□□ 0.64
VIM-206ENST00000487938 ZNF394Q53GI3 561 aa19.03■□□□□ 0.64
VIM-206ENST00000487938 SLFN12LQ6IEE8 588 aa19.03■□□□□ 0.64
VIM-206ENST00000487938 HIBCHQ6NVY1 386 aaPredicted RBP19.03■□□□□ 0.64
VIM-206ENST00000487938 PLCD3Q8N3E9 789 aa19.03■□□□□ 0.64
VIM-206ENST00000487938 ACSF2Q96CM8 615 aaPredicted RBP19.03■□□□□ 0.64
VIM-206ENST00000487938 VCPIP1Q96JH7 1222 aa19.03■□□□□ 0.64
VIM-206ENST00000487938 CGRRF1Q99675 332 aa19.03■□□□□ 0.64
VIM-206ENST00000487938 FHDC1Q9C0D6 1143 aaPredicted RBP19.03■□□□□ 0.64
VIM-206ENST00000487938 ACAD9Q9H845 621 aa19.03■□□□□ 0.64
VIM-206ENST00000487938 PARVAQ9NVD7 372 aa19.03■□□□□ 0.64
VIM-206ENST00000487938 DNPEPQ9ULA0 475 aa19.03■□□□□ 0.64
VIM-206ENST00000487938 TPX2Q9ULW0 747 aaKnown RBP19.03■□□□□ 0.64
VIM-206ENST00000487938 CNTNAP2Q9UHC6 1331 aa19.03■□□□□ 0.64
VIM-206ENST00000487938 A0A0B4J269 797 aa19.02■□□□□ 0.64
VIM-206ENST00000487938 ARL2P36404 184 aa19.02■□□□□ 0.64
VIM-206ENST00000487938 ZKSCAN8Q15776 578 aaPredicted RBP19.02■□□□□ 0.64
VIM-206ENST00000487938 ZBTB33Q86T24 672 aa19.02■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 138.2 ms