RNA–Protein interactions for RNA: ENST00000486227.5

HDAC6-228, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 4,718 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-228ENST00000486227 CNPY4Q8N129 248 aa11.62□□□□□ -0.55
HDAC6-228ENST00000486227 TNFRSF25Q93038 417 aa11.62□□□□□ -0.55
HDAC6-228ENST00000486227 MCEEQ96PE7 176 aa11.62□□□□□ -0.55
HDAC6-228ENST00000486227 P2RX7Q99572 595 aaKnown RBP11.62□□□□□ -0.55
HDAC6-228ENST00000486227 NOD2Q9HC29 1040 aa11.62□□□□□ -0.55
HDAC6-228ENST00000486227 DDX56Q9NY93 547 aaKnown RBP11.62□□□□□ -0.55
HDAC6-228ENST00000486227 TRAF3IP3Q9Y228 551 aa11.62□□□□□ -0.55
HDAC6-228ENST00000486227 BCL9LQ86UU0 1499 aa11.62□□□□□ -0.55
HDAC6-228ENST00000486227 RAD51CO43502 376 aa11.62□□□□□ -0.55
HDAC6-228ENST00000486227 PDGFRAP16234 1089 aa11.62□□□□□ -0.55
HDAC6-228ENST00000486227 PTPRAP18433 802 aa11.62□□□□□ -0.55
HDAC6-228ENST00000486227 NFKBIAP25963 317 aa11.62□□□□□ -0.55
HDAC6-228ENST00000486227 CAV1Q03135 178 aa11.62□□□□□ -0.55
HDAC6-228ENST00000486227 TAP1Q03518 808 aa11.62□□□□□ -0.55
HDAC6-228ENST00000486227 C2CD6Q53TS8 623 aa11.62□□□□□ -0.55
HDAC6-228ENST00000486227 IZUMO3Q5VZ72 239 aa11.62□□□□□ -0.55
HDAC6-228ENST00000486227 GPAT2Q6NUI2 795 aa11.62□□□□□ -0.55
HDAC6-228ENST00000486227 GLB1LQ6UWU2 654 aa11.62□□□□□ -0.55
HDAC6-228ENST00000486227 ZNF571Q7Z3V5 609 aaPredicted RBP11.62□□□□□ -0.55
HDAC6-228ENST00000486227 SRRM1Q8IYB3 904 aaKnown RBP11.62□□□□□ -0.55
HDAC6-228ENST00000486227 TPCN2Q8NHX9 752 aa11.62□□□□□ -0.55
HDAC6-228ENST00000486227 KCNV2Q8TDN2 545 aa11.62□□□□□ -0.55
HDAC6-228ENST00000486227 PFDN4Q9NQP4 134 aa11.62□□□□□ -0.55
HDAC6-228ENST00000486227 BCAP29Q9UHQ4 241 aa11.62□□□□□ -0.55
HDAC6-228ENST00000486227 ANGPTL2Q9UKU9 493 aa11.62□□□□□ -0.55
HDAC6-228ENST00000486227 DCDC2CA8MYV0 355 aa11.61□□□□□ -0.55
HDAC6-228ENST00000486227 OGTO15294 1046 aa11.61□□□□□ -0.55
HDAC6-228ENST00000486227 CYP3A4P08684 503 aa11.61□□□□□ -0.55
HDAC6-228ENST00000486227 NAMPTP43490 491 aa11.61□□□□□ -0.55
HDAC6-228ENST00000486227 SLC12A3P55017 1021 aa11.61□□□□□ -0.55
HDAC6-228ENST00000486227 CDK17Q00537 523 aa11.61□□□□□ -0.55
HDAC6-228ENST00000486227 KCNA1Q09470 495 aa11.61□□□□□ -0.55
HDAC6-228ENST00000486227 SLC30A9Q6PML9 568 aa11.61□□□□□ -0.55
HDAC6-228ENST00000486227 DDX42Q86XP3 938 aaKnown RBP eCLIP11.61□□□□□ -0.55
HDAC6-228ENST00000486227 NKX2-3Q8TAU0 364 aa11.61□□□□□ -0.55
HDAC6-228ENST00000486227 GANCQ8TET4 914 aa11.61□□□□□ -0.55
HDAC6-228ENST00000486227 CAVIN3Q969G5 261 aa11.61□□□□□ -0.55
HDAC6-228ENST00000486227 DDX27Q96GQ7 796 aaKnown RBP11.61□□□□□ -0.55
HDAC6-228ENST00000486227 SENP7Q9BQF6 1050 aa11.61□□□□□ -0.55
HDAC6-228ENST00000486227 KLHL8Q9P2G9 620 aaPredicted RBP11.61□□□□□ -0.55
HDAC6-228ENST00000486227 DMGDHQ9UI17 866 aaKnown RBP11.61□□□□□ -0.55
HDAC6-228ENST00000486227 DBR1Q9UK59 544 aaKnown RBP11.61□□□□□ -0.55
HDAC6-228ENST00000486227 DYNC1LI1Q9Y6G9 523 aaKnown RBP11.61□□□□□ -0.55
HDAC6-228ENST00000486227 LRRC10BA6NIK2 292 aa11.61□□□□□ -0.55
HDAC6-228ENST00000486227 F5H423 210 aaPredicted RBP11.61□□□□□ -0.55
HDAC6-228ENST00000486227 FSBPO95073 299 aa11.61□□□□□ -0.55
HDAC6-228ENST00000486227 AGTP01019 485 aa11.61□□□□□ -0.55
HDAC6-228ENST00000486227 KCNJ1P48048 391 aa11.61□□□□□ -0.55
HDAC6-228ENST00000486227 NME3Q13232 169 aa11.61□□□□□ -0.55
HDAC6-228ENST00000486227 RNF219Q5W0B1 726 aaPredicted RBP11.61□□□□□ -0.55
HDAC6-228ENST00000486227 NXNQ6DKJ4 435 aa11.61□□□□□ -0.55
HDAC6-228ENST00000486227 PCGF5Q86SE9 256 aa11.61□□□□□ -0.55
HDAC6-228ENST00000486227 USP38Q8NB14 1042 aa11.61□□□□□ -0.55
HDAC6-228ENST00000486227 ATL2Q8NHH9 583 aa11.61□□□□□ -0.55
HDAC6-228ENST00000486227 TNIP3Q96KP6 325 aa11.61□□□□□ -0.55
HDAC6-228ENST00000486227 ISCUQ9H1K1 167 aa11.61□□□□□ -0.55
HDAC6-228ENST00000486227 A1CFQ9NQ94 594 aaKnown RBP11.61□□□□□ -0.55
HDAC6-228ENST00000486227 FAM49BQ9NUQ9 324 aa11.61□□□□□ -0.55
HDAC6-228ENST00000486227 PDHXO00330 501 aa11.61□□□□□ -0.55
HDAC6-228ENST00000486227 CASQ2O14958 399 aaPredicted RBP11.61□□□□□ -0.55
HDAC6-228ENST00000486227 BNIP3LO60238 219 aa11.61□□□□□ -0.55
HDAC6-228ENST00000486227 GRAP2O75791 330 aa11.61□□□□□ -0.55
HDAC6-228ENST00000486227 RECQLP46063 649 aaPredicted RBP11.61□□□□□ -0.55
HDAC6-228ENST00000486227 FAM117BQ6P1L5 589 aa11.61□□□□□ -0.55
HDAC6-228ENST00000486227 SLC51AQ86UW1 340 aa11.61□□□□□ -0.55
HDAC6-228ENST00000486227 GRAMD1AQ96CP6 724 aa11.61□□□□□ -0.55
HDAC6-228ENST00000486227 FAM118BQ9BPY3 351 aa11.61□□□□□ -0.55
HDAC6-228ENST00000486227 OSBPL1AQ9BXW6 950 aa11.61□□□□□ -0.55
HDAC6-228ENST00000486227 MLXIPLQ9NP71 852 aa11.61□□□□□ -0.55
HDAC6-228ENST00000486227 USP20Q9Y2K6 914 aa11.61□□□□□ -0.55
HDAC6-228ENST00000486227 RASA4BC9J798 803 aa11.61□□□□□ -0.55
HDAC6-228ENST00000486227 H0Y3Z8 333 aa11.61□□□□□ -0.55
HDAC6-228ENST00000486227 RASA4O43374 803 aa11.61□□□□□ -0.55
HDAC6-228ENST00000486227 GMNNO75496 209 aa11.61□□□□□ -0.55
HDAC6-228ENST00000486227 IL18RAPO95256 599 aa11.61□□□□□ -0.55
HDAC6-228ENST00000486227 SLC4A1P02730 911 aa11.61□□□□□ -0.55
HDAC6-228ENST00000486227 PDHA1P08559 390 aa11.61□□□□□ -0.55
HDAC6-228ENST00000486227 GARTP22102 1010 aa11.61□□□□□ -0.55
HDAC6-228ENST00000486227 EPHB1P54762 984 aa11.61□□□□□ -0.55
HDAC6-228ENST00000486227 TATDN1Q6P1N9 297 aa11.61□□□□□ -0.55
HDAC6-228ENST00000486227 SV2AQ7L0J3 742 aa11.61□□□□□ -0.55
HDAC6-228ENST00000486227 TRPM8Q7Z2W7 1104 aa11.61□□□□□ -0.55
HDAC6-228ENST00000486227 PCSK9Q8NBP7 692 aaKnown RBP11.61□□□□□ -0.55
HDAC6-228ENST00000486227 SNF8Q96H20 258 aa11.61□□□□□ -0.55
HDAC6-228ENST00000486227 CELF4Q9BZC1 486 aaKnown RBP11.61□□□□□ -0.55
HDAC6-228ENST00000486227 SYNPO2Q9UMS6 1093 aa11.61□□□□□ -0.55
HDAC6-228ENST00000486227 ARSEP51690 589 aa11.6□□□□□ -0.55
HDAC6-228ENST00000486227 RAD23BP54727 409 aa11.6□□□□□ -0.55
HDAC6-228ENST00000486227 CUL2Q13617 745 aa11.6□□□□□ -0.55
HDAC6-228ENST00000486227 LY6KQ17RY6 165 aa11.6□□□□□ -0.55
HDAC6-228ENST00000486227 SLC35C1Q96A29 364 aa11.6□□□□□ -0.55
HDAC6-228ENST00000486227 CDCA5Q96FF9 252 aa11.6□□□□□ -0.55
HDAC6-228ENST00000486227 INTUQ9ULD6 942 aa11.6□□□□□ -0.55
HDAC6-228ENST00000486227 FNDC3AQ9Y2H6 1198 aaKnown RBP11.6□□□□□ -0.55
HDAC6-228ENST00000486227 ARL2BPQ9Y2Y0 163 aa11.6□□□□□ -0.55
HDAC6-228ENST00000486227 F8VZ95 297 aa11.6□□□□□ -0.55
HDAC6-228ENST00000486227 GAS2O43903 313 aaKnown RBP11.6□□□□□ -0.55
HDAC6-228ENST00000486227 CSDE1O75534 798 aaKnown RBP11.6□□□□□ -0.55
HDAC6-228ENST00000486227 CASP5P51878 434 aa11.6□□□□□ -0.55
HDAC6-228ENST00000486227 SKOR1P84550 965 aa11.6□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms