RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 MED8Q96G25 268 aa8.92□□□□□ -0.98
USP54-211ENST00000474929 UROC1Q96N76 676 aa8.92□□□□□ -0.98
USP54-211ENST00000474929 DSCC1Q9BVC3 393 aa8.92□□□□□ -0.98
USP54-211ENST00000474929 KIF9Q9HAQ2 790 aa8.92□□□□□ -0.98
USP54-211ENST00000474929 RIC8AQ9NPQ8 531 aa8.92□□□□□ -0.98
USP54-211ENST00000474929 TMEM74BQ9NUR3 256 aa8.92□□□□□ -0.98
USP54-211ENST00000474929 MIOSQ9NXC5 875 aa8.92□□□□□ -0.98
USP54-211ENST00000474929 SNTG2Q9NY99 539 aa8.92□□□□□ -0.98
USP54-211ENST00000474929 SEPT3Q9UH03 358 aa8.92□□□□□ -0.98
USP54-211ENST00000474929 GOLGA4Q13439 2230 aaKnown RBP8.92□□□□□ -0.98
USP54-211ENST00000474929 KIAA1549LQ6ZVL6 1849 aa8.91□□□□□ -0.98
USP54-211ENST00000474929 IGLV3-22A0A075B6J6 115 aa8.91□□□□□ -0.98
USP54-211ENST00000474929 CASTOR2A6NHX0 329 aa8.91□□□□□ -0.98
USP54-211ENST00000474929 NRG2O14511 850 aaPredicted RBP8.91□□□□□ -0.98
USP54-211ENST00000474929 DKC1O60832 514 aaKnown RBP eCLIP8.91□□□□□ -0.98
USP54-211ENST00000474929 PRKCBP05771 671 aa8.91□□□□□ -0.98
USP54-211ENST00000474929 THP07101 528 aa8.91□□□□□ -0.98
USP54-211ENST00000474929 CDK4P11802 303 aa8.91□□□□□ -0.98
USP54-211ENST00000474929 GNSP15586 552 aa8.91□□□□□ -0.98
USP54-211ENST00000474929 ADSSP30520 456 aa8.91□□□□□ -0.98
USP54-211ENST00000474929 PTGER3P43115 390 aa8.91□□□□□ -0.98
USP54-211ENST00000474929 ADCY7P51828 1080 aa8.91□□□□□ -0.98
USP54-211ENST00000474929 CYP4A11Q02928 519 aa8.91□□□□□ -0.98
USP54-211ENST00000474929 TNK2Q07912 1038 aa8.91□□□□□ -0.98
USP54-211ENST00000474929 TWF1Q12792 350 aa8.91□□□□□ -0.98
USP54-211ENST00000474929 PSMD2Q13200 908 aa8.91□□□□□ -0.98
USP54-211ENST00000474929 NBR1Q14596 966 aa8.91□□□□□ -0.98
USP54-211ENST00000474929 SLC27A1Q6PCB7 646 aa8.91□□□□□ -0.98
USP54-211ENST00000474929 HEATR3Q7Z4Q2 680 aa8.91□□□□□ -0.98
USP54-211ENST00000474929 SLCO6A1Q86UG4 719 aa8.91□□□□□ -0.98
USP54-211ENST00000474929 TMPRSS12Q86WS5 348 aa8.91□□□□□ -0.98
USP54-211ENST00000474929 CPA6Q8N4T0 437 aa8.91□□□□□ -0.98
USP54-211ENST00000474929 DAGLBQ8NCG7 672 aa8.91□□□□□ -0.98
USP54-211ENST00000474929 GSTCDQ8NEC7 633 aa8.91□□□□□ -0.98
USP54-211ENST00000474929 MDGA1Q8NFP4 955 aa8.91□□□□□ -0.98
USP54-211ENST00000474929 RSPRY1Q96DX4 576 aa8.91□□□□□ -0.98
USP54-211ENST00000474929 DDX27Q96GQ7 796 aaKnown RBP8.91□□□□□ -0.98
USP54-211ENST00000474929 ZFYVE19Q96K21 471 aa8.91□□□□□ -0.98
USP54-211ENST00000474929 CAMK1GQ96NX5 476 aa8.91□□□□□ -0.98
USP54-211ENST00000474929 GCNAQ96QF7 691 aa8.91□□□□□ -0.98
USP54-211ENST00000474929 EIF2AQ9BY44 585 aaKnown RBP8.91□□□□□ -0.98
USP54-211ENST00000474929 FAM117AQ9C073 453 aa8.91□□□□□ -0.98
USP54-211ENST00000474929 NXF3Q9H4D5 531 aaKnown RBP8.91□□□□□ -0.98
USP54-211ENST00000474929 DCTPP1Q9H773 170 aa8.91□□□□□ -0.98
USP54-211ENST00000474929 ZBTB47Q9UFB7 747 aaPredicted RBP8.91□□□□□ -0.98
USP54-211ENST00000474929 AFF4Q9UHB7 1163 aaKnown RBP8.91□□□□□ -0.98
USP54-211ENST00000474929 CIZ1Q9ULV3 898 aaPredicted RBP8.91□□□□□ -0.98
USP54-211ENST00000474929 MMP17Q9ULZ9 603 aa8.91□□□□□ -0.98
USP54-211ENST00000474929 INVSQ9Y283 1065 aa8.91□□□□□ -0.98
USP54-211ENST00000474929 HES2Q9Y543 173 aa8.91□□□□□ -0.98
USP54-211ENST00000474929 ASB3Q9Y575 518 aa8.91□□□□□ -0.98
USP54-211ENST00000474929 ATG2BQ96BY7 2078 aa8.91□□□□□ -0.98
USP54-211ENST00000474929 ARID2Q68CP9 1835 aa8.9□□□□□ -0.98
USP54-211ENST00000474929 A0A1W2PRU2 124 aa8.9□□□□□ -0.98
USP54-211ENST00000474929 FAM86B1E9PN63 330 aa8.9□□□□□ -0.98
USP54-211ENST00000474929 SYN3O14994 580 aa8.9□□□□□ -0.98
USP54-211ENST00000474929 MARCH6O60337 910 aa8.9□□□□□ -0.98
USP54-211ENST00000474929 TSPAN1O60635 241 aa8.9□□□□□ -0.98
USP54-211ENST00000474929 CER1O95813 267 aa8.9□□□□□ -0.98
USP54-211ENST00000474929 CYP3A4P08684 503 aa8.9□□□□□ -0.98
USP54-211ENST00000474929 FAM86B2P0C5J1 330 aa8.9□□□□□ -0.98
USP54-211ENST00000474929 CALM1P0DP23 149 aa8.9□□□□□ -0.98
USP54-211ENST00000474929 CALM2P0DP24 149 aa8.9□□□□□ -0.98
USP54-211ENST00000474929 CALM3P0DP25 149 aa8.9□□□□□ -0.98
USP54-211ENST00000474929 ITPKAP23677 461 aa8.9□□□□□ -0.98
USP54-211ENST00000474929 RFC5P40937 340 aa8.9□□□□□ -0.98
USP54-211ENST00000474929 NMIQ13287 307 aaPredicted RBP8.9□□□□□ -0.98
USP54-211ENST00000474929 TFDP1Q14186 410 aa8.9□□□□□ -0.98
USP54-211ENST00000474929 PDGFRLQ15198 375 aa8.9□□□□□ -0.98
USP54-211ENST00000474929 CC2D1AQ6P1N0 951 aaPredicted RBP8.9□□□□□ -0.98
USP54-211ENST00000474929 RALYLQ86SE5 291 aaKnown RBP8.9□□□□□ -0.98
USP54-211ENST00000474929 FMNL3Q8IVF7 1028 aa8.9□□□□□ -0.98
USP54-211ENST00000474929 SPRYD3Q8NCJ5 442 aa8.9□□□□□ -0.98
USP54-211ENST00000474929 CD101Q93033 1021 aa8.9□□□□□ -0.98
USP54-211ENST00000474929 RIT2Q99578 217 aa8.9□□□□□ -0.98
USP54-211ENST00000474929 BCCIPQ9P287 314 aaKnown RBP eCLIP8.9□□□□□ -0.98
USP54-211ENST00000474929 PARP2Q9UGN5 583 aa8.9□□□□□ -0.98
USP54-211ENST00000474929 PAXBP1Q9Y5B6 917 aa8.9□□□□□ -0.98
USP54-211ENST00000474929 ATMQ13315 3056 aa8.9□□□□□ -0.99
USP54-211ENST00000474929 PYCARD-AS1I3L0S3 204 aa8.89□□□□□ -0.99
USP54-211ENST00000474929 B3GAT3O94766 335 aa8.89□□□□□ -0.99
USP54-211ENST00000474929 GJA1P17302 382 aa8.89□□□□□ -0.99
USP54-211ENST00000474929 ACTN2P35609 894 aa8.89□□□□□ -0.99
USP54-211ENST00000474929 EPHB3P54753 998 aa8.89□□□□□ -0.99
USP54-211ENST00000474929 NAPAP54920 295 aa8.89□□□□□ -0.99
USP54-211ENST00000474929 RPL6Q02878 288 aaKnown RBP8.89□□□□□ -0.99
USP54-211ENST00000474929 TLE3Q04726 772 aa8.89□□□□□ -0.99
USP54-211ENST00000474929 MXD4Q14582 209 aaPredicted RBP8.89□□□□□ -0.99
USP54-211ENST00000474929 CRY1Q16526 586 aa8.89□□□□□ -0.99
USP54-211ENST00000474929 INAVAQ3KP66 663 aa8.89□□□□□ -0.99
USP54-211ENST00000474929 PLEKHG6Q3KR16 790 aa8.89□□□□□ -0.99
USP54-211ENST00000474929 SYCP2LQ5T4T6 812 aa8.89□□□□□ -0.99
USP54-211ENST00000474929 ZNF280DQ6N043 979 aa8.89□□□□□ -0.99
USP54-211ENST00000474929 IL27RAQ6UWB1 636 aa8.89□□□□□ -0.99
USP54-211ENST00000474929 ITIH5Q86UX2 942 aa8.89□□□□□ -0.99
USP54-211ENST00000474929 KSR1Q8IVT5 923 aa8.89□□□□□ -0.99
USP54-211ENST00000474929 HS6ST3Q8IZP7 471 aa8.89□□□□□ -0.99
USP54-211ENST00000474929 KRI1Q8N9T8 703 aaKnown RBP8.89□□□□□ -0.99
USP54-211ENST00000474929 RNF149Q8NC42 400 aa8.89□□□□□ -0.99
USP54-211ENST00000474929 BAHD1Q8TBE0 780 aaPredicted RBP8.89□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms