RNA–Protein interactions for RNA: ENST00000467885.6

USP39-213, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5

Gene USP39, Length 338 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-213ENST00000467885 RABGGTAQ92696 567 aa6.41□□□□□ -1.38
USP39-213ENST00000467885 KAT5Q92993 513 aa6.41□□□□□ -1.38
USP39-213ENST00000467885 FAXDC2Q96IV6 333 aa6.41□□□□□ -1.38
USP39-213ENST00000467885 ANKRD36BP1Q96IX9 119 aa6.41□□□□□ -1.38
USP39-213ENST00000467885 KREMEN1Q96MU8 473 aa6.41□□□□□ -1.38
USP39-213ENST00000467885 PAAF1Q9BRP4 392 aa6.41□□□□□ -1.38
USP39-213ENST00000467885 NUP58Q9BVL2 599 aa6.41□□□□□ -1.38
USP39-213ENST00000467885 MTMR12Q9C0I1 747 aa6.41□□□□□ -1.38
USP39-213ENST00000467885 GANQ9H2C0 597 aa6.41□□□□□ -1.38
USP39-213ENST00000467885 NRDE2Q9H7Z3 1164 aa6.41□□□□□ -1.38
USP39-213ENST00000467885 VRTNQ9H8Y1 702 aa6.41□□□□□ -1.38
USP39-213ENST00000467885 PRKAG2Q9UGJ0 569 aa6.41□□□□□ -1.38
USP39-213ENST00000467885 TUBGCP4Q9UGJ1 667 aa6.41□□□□□ -1.38
USP39-213ENST00000467885 FBXL5Q9UKA1 691 aa6.41□□□□□ -1.38
USP39-213ENST00000467885 DNAJC12Q9UKB3 198 aa6.41□□□□□ -1.38
USP39-213ENST00000467885 AJAP1Q9UKB5 411 aaPredicted RBP6.41□□□□□ -1.38
USP39-213ENST00000467885 UBQLN1Q9UMX0 589 aaKnown RBP6.41□□□□□ -1.38
USP39-213ENST00000467885 CNTN6Q9UQ52 1028 aa6.41□□□□□ -1.38
USP39-213ENST00000467885 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP6.41□□□□□ -1.38
USP39-213ENST00000467885 ITIH6Q6UXX5 1313 aa6.41□□□□□ -1.38
USP39-213ENST00000467885 LOXHD1Q8IVV2 1947 aa6.4□□□□□ -1.38
USP39-213ENST00000467885 MKI67P46013 3256 aaKnown RBP6.4□□□□□ -1.38
USP39-213ENST00000467885 A0A1W2PQJ5 194 aa6.4□□□□□ -1.38
USP39-213ENST00000467885 KPNA7A9QM74 516 aa6.4□□□□□ -1.38
USP39-213ENST00000467885 EFCAB14O75071 495 aa6.4□□□□□ -1.38
USP39-213ENST00000467885 N4BP1O75113 896 aaKnown RBP6.4□□□□□ -1.38
USP39-213ENST00000467885 ZC3H11AO75152 810 aaKnown RBP eCLIP6.4□□□□□ -1.38
USP39-213ENST00000467885 PHACTR2O75167 634 aa6.4□□□□□ -1.38
USP39-213ENST00000467885 BAIAP3O94812 1187 aa6.4□□□□□ -1.38
USP39-213ENST00000467885 TNNC2P02585 160 aa6.4□□□□□ -1.38
USP39-213ENST00000467885 GYPCP04921 128 aa6.4□□□□□ -1.38
USP39-213ENST00000467885 ITGB3P05106 788 aa6.4□□□□□ -1.38
USP39-213ENST00000467885 GALTP07902 379 aa6.4□□□□□ -1.38
USP39-213ENST00000467885 WEE2P0C1S8 567 aa6.4□□□□□ -1.38
USP39-213ENST00000467885 TMEM191BP0C7N4 346 aa6.4□□□□□ -1.38
USP39-213ENST00000467885 ACO1P21399 889 aaKnown RBP6.4□□□□□ -1.38
USP39-213ENST00000467885 HNRNPH3P31942 346 aaKnown RBP6.4□□□□□ -1.38
USP39-213ENST00000467885 CASP14P31944 242 aa6.4□□□□□ -1.38
USP39-213ENST00000467885 MXI1P50539 228 aa6.4□□□□□ -1.38
USP39-213ENST00000467885 CLCNKBP51801 687 aa6.4□□□□□ -1.38
USP39-213ENST00000467885 ADKP55263 362 aaKnown RBP6.4□□□□□ -1.38
USP39-213ENST00000467885 CDH8P55286 799 aa6.4□□□□□ -1.38
USP39-213ENST00000467885 LILRA4P59901 499 aa6.4□□□□□ -1.38
USP39-213ENST00000467885 POLR2FP61218 127 aaKnown RBP6.4□□□□□ -1.38
USP39-213ENST00000467885 HTRA4P83105 476 aaPredicted RBP6.4□□□□□ -1.38
USP39-213ENST00000467885 GOLGA8FQ08AF8 430 aa6.4□□□□□ -1.38
USP39-213ENST00000467885 GOLGA8DPQ0D2H9 430 aa6.4□□□□□ -1.38
USP39-213ENST00000467885 CETN1Q12798 172 aa6.4□□□□□ -1.38
USP39-213ENST00000467885 BIRC3Q13489 604 aa6.4□□□□□ -1.38
USP39-213ENST00000467885 DRAP1Q14919 205 aaPredicted RBP6.4□□□□□ -1.38
USP39-213ENST00000467885 SHHQ15465 462 aa6.4□□□□□ -1.38
USP39-213ENST00000467885 IQCEQ6IPM2 695 aa6.4□□□□□ -1.38
USP39-213ENST00000467885 WDR59Q6PJI9 974 aa6.4□□□□□ -1.38
USP39-213ENST00000467885 GLB1LQ6UWU2 654 aa6.4□□□□□ -1.38
USP39-213ENST00000467885 RRAGAQ7L523 313 aa6.4□□□□□ -1.38
USP39-213ENST00000467885 CCDC186Q7Z3E2 898 aa6.4□□□□□ -1.38
USP39-213ENST00000467885 TMC6Q7Z403 805 aa6.4□□□□□ -1.38
USP39-213ENST00000467885 UBR7Q8N806 425 aa6.4□□□□□ -1.38
USP39-213ENST00000467885 SPC24Q8NBT2 197 aa6.4□□□□□ -1.38
USP39-213ENST00000467885 BEST2Q8NFU1 509 aa6.4□□□□□ -1.38
USP39-213ENST00000467885 PHOSPHO2Q8TCD6 241 aa6.4□□□□□ -1.38
USP39-213ENST00000467885 TAF4BQ92750 862 aa6.4□□□□□ -1.38
USP39-213ENST00000467885 JAKMIP2Q96AA8 810 aa6.4□□□□□ -1.38
USP39-213ENST00000467885 HPDLQ96IR7 371 aa6.4□□□□□ -1.38
USP39-213ENST00000467885 GDF15Q99988 308 aa6.4□□□□□ -1.38
USP39-213ENST00000467885 STK33Q9BYT3 514 aa6.4□□□□□ -1.38
USP39-213ENST00000467885 GPR88Q9GZN0 384 aa6.4□□□□□ -1.38
USP39-213ENST00000467885 SDCBP2Q9H190 292 aa6.4□□□□□ -1.38
USP39-213ENST00000467885 CWH43Q9H720 699 aa6.4□□□□□ -1.38
USP39-213ENST00000467885 GOLGA2P5Q9HBQ8 144 aa6.4□□□□□ -1.38
USP39-213ENST00000467885 UTP3Q9NQZ2 479 aaKnown RBP eCLIP6.4□□□□□ -1.389e-9■■■■■ 111.8
USP39-213ENST00000467885 FAM207AQ9NSI2 230 aaPredicted RBP6.4□□□□□ -1.38
USP39-213ENST00000467885 SLC38A7Q9NVC3 462 aa6.4□□□□□ -1.38
USP39-213ENST00000467885 TBC1D13Q9NVG8 400 aa6.4□□□□□ -1.38
USP39-213ENST00000467885 GDAP2Q9NXN4 497 aa6.4□□□□□ -1.38
USP39-213ENST00000467885 AIPL1Q9NZN9 384 aa6.4□□□□□ -1.38
USP39-213ENST00000467885 IMPACTQ9P2X3 320 aa6.4□□□□□ -1.38
USP39-213ENST00000467885 CACNG4Q9UBN1 327 aa6.4□□□□□ -1.38
USP39-213ENST00000467885 APEX2Q9UBZ4 518 aa6.4□□□□□ -1.38
USP39-213ENST00000467885 DNAJB4Q9UDY4 337 aa6.4□□□□□ -1.38
USP39-213ENST00000467885 ITGA11Q9UKX5 1188 aa6.4□□□□□ -1.38
USP39-213ENST00000467885 LRFN2Q9ULH4 789 aa6.4□□□□□ -1.38
USP39-213ENST00000467885 NR2E3Q9Y5X4 410 aa6.4□□□□□ -1.38
USP39-213ENST00000467885 MYH11P35749 1972 aa6.4□□□□□ -1.39
USP39-213ENST00000467885 FRMPD3Q5JV73 1810 aa6.39□□□□□ -1.39
USP39-213ENST00000467885 F8W810 466 aa6.39□□□□□ -1.39
USP39-213ENST00000467885 H0YGN5 161 aa6.39□□□□□ -1.39
USP39-213ENST00000467885 NRP1O14786 923 aa6.39□□□□□ -1.39
USP39-213ENST00000467885 XPOTO43592 962 aaKnown RBP6.39□□□□□ -1.39
USP39-213ENST00000467885 GJB5O95377 273 aa6.39□□□□□ -1.39
USP39-213ENST00000467885 AMHP03971 560 aa6.39□□□□□ -1.39
USP39-213ENST00000467885 TPM3P06753 285 aa6.39□□□□□ -1.39
USP39-213ENST00000467885 KRT19P08727 400 aa6.39□□□□□ -1.39
USP39-213ENST00000467885 LINC00271P0C7V0 271 aa6.39□□□□□ -1.39
USP39-213ENST00000467885 IBSPP21815 317 aaPredicted RBP6.39□□□□□ -1.39
USP39-213ENST00000467885 POLR2BP30876 1174 aaKnown RBP6.39□□□□□ -1.39
USP39-213ENST00000467885 CLCN1P35523 988 aa6.39□□□□□ -1.39
USP39-213ENST00000467885 KRT9P35527 623 aa6.39□□□□□ -1.39
USP39-213ENST00000467885 MAGEA10P43363 369 aaPredicted RBP6.39□□□□□ -1.39
USP39-213ENST00000467885 AARSP49588 968 aaKnown RBP eCLIP6.39□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms