RNA–Protein interactions for RNA: ENST00000465461.6

CUX1-207, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 502 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-207ENST00000465461 PCDHB8Q9UN66 801 aa12.59□□□□□ -0.39
CUX1-207ENST00000465461 CTNND2Q9UQB3 1225 aa12.59□□□□□ -0.39
CUX1-207ENST00000465461 SSX2IPQ9Y2D8 614 aa12.59□□□□□ -0.39
CUX1-207ENST00000465461 FRMD4BQ9Y2L6 1034 aa12.59□□□□□ -0.39
CUX1-207ENST00000465461 CDY1Q9Y6F8 540 aa12.59□□□□□ -0.39
CUX1-207ENST00000465461 GOLGA6L22H0YM25 854 aa12.58□□□□□ -0.4
CUX1-207ENST00000465461 M0QZQ0 153 aa12.58□□□□□ -0.4
CUX1-207ENST00000465461 CYB561D2O14569 222 aa12.58□□□□□ -0.4
CUX1-207ENST00000465461 TGM5O43548 720 aa12.58□□□□□ -0.4
CUX1-207ENST00000465461 TNNC2P02585 160 aa12.58□□□□□ -0.4
CUX1-207ENST00000465461 ADH1AP07327 375 aa12.58□□□□□ -0.4
CUX1-207ENST00000465461 OR4Q2P0C623 313 aa12.58□□□□□ -0.4
CUX1-207ENST00000465461 IL9P15248 144 aa12.58□□□□□ -0.4
CUX1-207ENST00000465461 OR1D2P34982 312 aa12.58□□□□□ -0.4
CUX1-207ENST00000465461 AARSP49588 968 aaKnown RBP eCLIP12.58□□□□□ -0.4
CUX1-207ENST00000465461 TAF6P49848 677 aa12.58□□□□□ -0.4
CUX1-207ENST00000465461 MRPS5P82675 430 aaKnown RBP12.58□□□□□ -0.4
CUX1-207ENST00000465461 SURF1Q15526 300 aa12.58□□□□□ -0.4
CUX1-207ENST00000465461 LEXMQ3ZCV2 418 aa12.58□□□□□ -0.4
CUX1-207ENST00000465461 CTXN3Q4LDR2 81 aa12.58□□□□□ -0.4
CUX1-207ENST00000465461 COBLL1Q53SF7 1204 aa12.58□□□□□ -0.4
CUX1-207ENST00000465461 C1orf220Q5T0J3 134 aa12.58□□□□□ -0.4
CUX1-207ENST00000465461 ANKRD54Q6NXT1 300 aa12.58□□□□□ -0.4
CUX1-207ENST00000465461 SYCE2Q6PIF2 218 aa12.58□□□□□ -0.4
CUX1-207ENST00000465461 TRAPPC11Q7Z392 1133 aa12.58□□□□□ -0.4
CUX1-207ENST00000465461 PARD3BQ8TEW8 1205 aa12.58□□□□□ -0.4
CUX1-207ENST00000465461 NELFBQ8WX92 580 aa12.58□□□□□ -0.4
CUX1-207ENST00000465461 MSLNLQ96KJ4 702 aa12.58□□□□□ -0.4
CUX1-207ENST00000465461 ASB2Q96Q27 587 aa12.58□□□□□ -0.4
CUX1-207ENST00000465461 MMRN2Q9H8L6 949 aa12.58□□□□□ -0.4
CUX1-207ENST00000465461 UTP3Q9NQZ2 479 aaKnown RBP eCLIP12.58□□□□□ -0.4
CUX1-207ENST00000465461 FNIP2Q9P278 1114 aa12.58□□□□□ -0.4
CUX1-207ENST00000465461 MTRRQ9UBK8 725 aa12.58□□□□□ -0.4
CUX1-207ENST00000465461 CD207Q9UJ71 328 aa12.58□□□□□ -0.4
CUX1-207ENST00000465461 GRXCR2A6NFK2 248 aa12.57□□□□□ -0.4
CUX1-207ENST00000465461 KPNA7A9QM74 516 aa12.57□□□□□ -0.4
CUX1-207ENST00000465461 PSMA7O14818 248 aa12.57□□□□□ -0.4
CUX1-207ENST00000465461 SYN3O14994 580 aa12.57□□□□□ -0.4
CUX1-207ENST00000465461 GLUD1P00367 558 aa12.57□□□□□ -0.4
CUX1-207ENST00000465461 TRIM49P0CI25 452 aa12.57□□□□□ -0.4
CUX1-207ENST00000465461 TRIM49CP0CI26 452 aa12.57□□□□□ -0.4
CUX1-207ENST00000465461 CCNE1P24864 410 aa12.57□□□□□ -0.4
CUX1-207ENST00000465461 RPL13P26373 211 aaKnown RBP12.57□□□□□ -0.4
CUX1-207ENST00000465461 VAMP7P51809 220 aa12.57□□□□□ -0.4
CUX1-207ENST00000465461 RBP5P82980 135 aa12.57□□□□□ -0.4
CUX1-207ENST00000465461 MRPL58Q14197 206 aaKnown RBP12.57□□□□□ -0.4
CUX1-207ENST00000465461 MYBPC2Q14324 1141 aa12.57□□□□□ -0.4
CUX1-207ENST00000465461 NFIL3Q16649 462 aa12.57□□□□□ -0.4
CUX1-207ENST00000465461 EDRF1Q3B7T1 1238 aa12.57□□□□□ -0.4
CUX1-207ENST00000465461 RARS2Q5T160 578 aaKnown RBP12.57□□□□□ -0.4
CUX1-207ENST00000465461 PTCRAQ6ISU1 281 aaPredicted RBP12.57□□□□□ -0.4
CUX1-207ENST00000465461 TMEM184AQ6ZMB5 413 aa12.57□□□□□ -0.4
CUX1-207ENST00000465461 ANKS3Q6ZW76 656 aa12.57□□□□□ -0.4
CUX1-207ENST00000465461 PPFIBP1Q86W92 1011 aa12.57□□□□□ -0.4
CUX1-207ENST00000465461 FAM186BQ8IYM0 893 aa12.57□□□□□ -0.4
CUX1-207ENST00000465461 TMEM174Q8WUU8 243 aa12.57□□□□□ -0.4
CUX1-207ENST00000465461 ATXN2LQ8WWM7 1075 aaKnown RBP12.57□□□□□ -0.4
CUX1-207ENST00000465461 CASP10Q92851 521 aa12.57□□□□□ -0.4
CUX1-207ENST00000465461 DHTKD1Q96HY7 919 aaPredicted RBP12.57□□□□□ -0.4
CUX1-207ENST00000465461 TMEM209Q96SK2 561 aa12.57□□□□□ -0.4
CUX1-207ENST00000465461 TSG101Q99816 390 aa12.57□□□□□ -0.4
CUX1-207ENST00000465461 DUSP9Q99956 384 aaKnown RBP12.57□□□□□ -0.4
CUX1-207ENST00000465461 S1PR5Q9H228 398 aa12.57□□□□□ -0.4
CUX1-207ENST00000465461 MAN1C1Q9NR34 630 aa12.57□□□□□ -0.4
CUX1-207ENST00000465461 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP12.57□□□□□ -0.4
CUX1-207ENST00000465461 FBXL5Q9UKA1 691 aa12.57□□□□□ -0.4
CUX1-207ENST00000465461 ITGA11Q9UKX5 1188 aa12.57□□□□□ -0.4
CUX1-207ENST00000465461 TCF20Q9UGU0 1960 aaKnown RBP12.57□□□□□ -0.4
CUX1-207ENST00000465461 SPDYE4A6NLX3 237 aa12.56□□□□□ -0.4
CUX1-207ENST00000465461 CETN3O15182 167 aa12.56□□□□□ -0.4
CUX1-207ENST00000465461 MBTPS2O43462 519 aa12.56□□□□□ -0.4
CUX1-207ENST00000465461 HCRTO43612 131 aa12.56□□□□□ -0.4
CUX1-207ENST00000465461 TBC1D4O60343 1298 aa12.56□□□□□ -0.4
CUX1-207ENST00000465461 PHACTR2O75167 634 aa12.56□□□□□ -0.4
CUX1-207ENST00000465461 RFPL2O75678 378 aa12.56□□□□□ -0.4
CUX1-207ENST00000465461 C4BPAP04003 597 aaKnown RBP12.56□□□□□ -0.4
CUX1-207ENST00000465461 BMP1P13497 986 aa12.56□□□□□ -0.4
CUX1-207ENST00000465461 PSMC2P35998 433 aaKnown RBP12.56□□□□□ -0.4
CUX1-207ENST00000465461 MYL6P60660 151 aa12.56□□□□□ -0.4
CUX1-207ENST00000465461 YWHAHQ04917 246 aaPredicted RBP12.56□□□□□ -0.4
CUX1-207ENST00000465461 BIRC3Q13489 604 aa12.56□□□□□ -0.4
CUX1-207ENST00000465461 STIM1Q13586 685 aa12.56□□□□□ -0.4
CUX1-207ENST00000465461 SV2CQ496J9 727 aa12.56□□□□□ -0.4
CUX1-207ENST00000465461 TDRD10Q5VZ19 366 aaKnown RBP12.56□□□□□ -0.4
CUX1-207ENST00000465461 WSCD1Q658N2 575 aa12.56□□□□□ -0.4
CUX1-207ENST00000465461 LILRA6Q6PI73 481 aa12.56□□□□□ -0.4
CUX1-207ENST00000465461 TMC5Q6UXY8 1006 aa12.56□□□□□ -0.4
CUX1-207ENST00000465461 APPL2Q8NEU8 664 aa12.56□□□□□ -0.4
CUX1-207ENST00000465461 HPDLQ96IR7 371 aa12.56□□□□□ -0.4
CUX1-207ENST00000465461 NECAB3Q96P71 396 aaPredicted RBP12.56□□□□□ -0.4
CUX1-207ENST00000465461 GTF3C5Q9Y5Q8 519 aaPredicted RBP12.56□□□□□ -0.4
CUX1-207ENST00000465461 SNX9Q9Y5X1 595 aa12.56□□□□□ -0.4
CUX1-207ENST00000465461 BACE2Q9Y5Z0 518 aa12.56□□□□□ -0.4
CUX1-207ENST00000465461 PRUNE2Q8WUY3 3088 aa12.56□□□□□ -0.4
CUX1-207ENST00000465461 BRWD1Q9NSI6 2320 aa12.56□□□□□ -0.4
CUX1-207ENST00000465461 WDR27A2RRH5 827 aa12.55□□□□□ -0.4
CUX1-207ENST00000465461 H7C4K7 107 aa12.55□□□□□ -0.4
CUX1-207ENST00000465461 LRRN2O75325 713 aa12.55□□□□□ -0.4
CUX1-207ENST00000465461 CLSTN1O94985 981 aa12.55□□□□□ -0.4
CUX1-207ENST00000465461 VNN1O95497 513 aa12.55□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms