RNA–Protein interactions for RNA: ENST00000464168.5

USP4-208, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 601 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-208ENST00000464168 TRPV5Q9NQA5 729 aa24.66■■□□□ 1.54
USP4-208ENST00000464168 NCDNQ9UBB6 729 aa24.66■■□□□ 1.54
USP4-208ENST00000464168 NDRG2Q9UN36 371 aaKnown RBP24.66■■□□□ 1.54
USP4-208ENST00000464168 TTC26A0AVF1 554 aa24.65■■□□□ 1.54
USP4-208ENST00000464168 VNN2O95498 520 aa24.65■■□□□ 1.54
USP4-208ENST00000464168 CLTAP09496 248 aa24.65■■□□□ 1.54
USP4-208ENST00000464168 MYL4P12829 197 aa24.65■■□□□ 1.54
USP4-208ENST00000464168 CPB1P15086 417 aa24.65■■□□□ 1.54
USP4-208ENST00000464168 PSMC3P17980 439 aa24.65■■□□□ 1.54
USP4-208ENST00000464168 LRPAP1P30533 357 aa24.65■■□□□ 1.54
USP4-208ENST00000464168 GDI1P31150 447 aa24.65■■□□□ 1.54
USP4-208ENST00000464168 SLC12A3P55017 1021 aa24.65■■□□□ 1.54
USP4-208ENST00000464168 ATP2C1P98194 919 aaPredicted RBP24.65■■□□□ 1.54
USP4-208ENST00000464168 ERICH6BQ5W0A0 696 aa24.65■■□□□ 1.54
USP4-208ENST00000464168 KCTD17Q8N5Z5 321 aa24.65■■□□□ 1.54
USP4-208ENST00000464168 LEMD2Q8NC56 503 aa24.65■■□□□ 1.54
USP4-208ENST00000464168 EPC1Q9H2F5 836 aa24.65■■□□□ 1.54
USP4-208ENST00000464168 TRPV4Q9HBA0 871 aa24.65■■□□□ 1.54
USP4-208ENST00000464168 ASAH2Q9NR71 780 aa24.65■■□□□ 1.54
USP4-208ENST00000464168 TIMM13Q9Y5L4 95 aaPredicted RBP24.65■■□□□ 1.54
USP4-208ENST00000464168 NPHP3-ACAD11A0A0J9YXS1 232 aa24.64■■□□□ 1.54
USP4-208ENST00000464168 YWHAHQ04917 246 aaPredicted RBP24.64■■□□□ 1.54
USP4-208ENST00000464168 MAMSTRQ6ZN01 415 aa24.64■■□□□ 1.54
USP4-208ENST00000464168 ZSCAN18Q8TBC5 510 aaPredicted RBP24.64■■□□□ 1.54
USP4-208ENST00000464168 CHRDQ9H2X0 955 aa24.64■■□□□ 1.54
USP4-208ENST00000464168 KCND2Q9NZV8 630 aa24.64■■□□□ 1.54
USP4-208ENST00000464168 NCANO14594 1321 aa24.63■■□□□ 1.53
USP4-208ENST00000464168 PLA2G4BP0C869 781 aa24.63■■□□□ 1.53
USP4-208ENST00000464168 TDGF1P13385 188 aa24.63■■□□□ 1.53
USP4-208ENST00000464168 AARSP49588 968 aaKnown RBP eCLIP24.63■■□□□ 1.53
USP4-208ENST00000464168 CACNB1Q02641 598 aaPredicted RBP24.63■■□□□ 1.53
USP4-208ENST00000464168 TEAD2Q15562 447 aa24.63■■□□□ 1.53
USP4-208ENST00000464168 RSPO4Q2I0M5 234 aaPredicted RBP24.63■■□□□ 1.53
USP4-208ENST00000464168 RILPL1Q5EBL4 403 aa24.63■■□□□ 1.53
USP4-208ENST00000464168 ARSHQ5FYA8 562 aa24.63■■□□□ 1.53
USP4-208ENST00000464168 MCTP1Q6DN14 999 aa24.63■■□□□ 1.53
USP4-208ENST00000464168 SHKBP1Q8TBC3 707 aa24.63■■□□□ 1.53
USP4-208ENST00000464168 DEPDC1BQ8WUY9 529 aa24.63■■□□□ 1.53
USP4-208ENST00000464168 FAM3CQ92520 227 aa24.63■■□□□ 1.53
USP4-208ENST00000464168 KIF12Q96FN5 646 aa24.63■■□□□ 1.53
USP4-208ENST00000464168 LRRC3Q9BY71 257 aa24.63■■□□□ 1.53
USP4-208ENST00000464168 FAM126AQ9BYI3 521 aaPredicted RBP24.63■■□□□ 1.53
USP4-208ENST00000464168 CRISPLD1Q9H336 500 aa24.63■■□□□ 1.53
USP4-208ENST00000464168 SMG5Q9UPR3 1016 aaKnown RBP24.63■■□□□ 1.53
USP4-208ENST00000464168 YIPF1Q9Y548 306 aa24.63■■□□□ 1.53
USP4-208ENST00000464168 OR4Q2P0C623 313 aa24.62■■□□□ 1.53
USP4-208ENST00000464168 CYP3A5P20815 502 aa24.62■■□□□ 1.53
USP4-208ENST00000464168 TNFSF9P41273 254 aa24.62■■□□□ 1.53
USP4-208ENST00000464168 MATR3P43243 847 aaKnown RBP eCLIP24.62■■□□□ 1.53
USP4-208ENST00000464168 MFSD6LQ8IWD5 586 aa24.62■■□□□ 1.53
USP4-208ENST00000464168 KCNN1Q92952 543 aa24.62■■□□□ 1.53
USP4-208ENST00000464168 PGLYRP2Q96PD5 576 aa24.62■■□□□ 1.53
USP4-208ENST00000464168 OXCT2Q9BYC2 517 aaPredicted RBP24.62■■□□□ 1.53
USP4-208ENST00000464168 LMAN1LQ9HAT1 526 aa24.62■■□□□ 1.53
USP4-208ENST00000464168 UBQLN1Q9UMX0 589 aaKnown RBP24.62■■□□□ 1.53
USP4-208ENST00000464168 PIAS3Q9Y6X2 628 aa24.62■■□□□ 1.53
USP4-208ENST00000464168 VWA3AA6NCI4 1184 aa24.61■■□□□ 1.53
USP4-208ENST00000464168 LACTBL1A8MY62 500 aa24.61■■□□□ 1.53
USP4-208ENST00000464168 ARNTLO00327 626 aa24.61■■□□□ 1.53
USP4-208ENST00000464168 GUCY2FP51841 1108 aa24.61■■□□□ 1.53
USP4-208ENST00000464168 NCKAP1LP55160 1127 aa24.61■■□□□ 1.53
USP4-208ENST00000464168 DUSP4Q13115 394 aa24.61■■□□□ 1.53
USP4-208ENST00000464168 TMEM119Q4V9L6 283 aa24.61■■□□□ 1.53
USP4-208ENST00000464168 HAUS6Q7Z4H7 955 aa24.61■■□□□ 1.53
USP4-208ENST00000464168 RSPRY1Q96DX4 576 aa24.61■■□□□ 1.53
USP4-208ENST00000464168 BICD1Q96G01 975 aa24.61■■□□□ 1.53
USP4-208ENST00000464168 GPR88Q9GZN0 384 aa24.61■■□□□ 1.53
USP4-208ENST00000464168 DNAJC25Q9H1X3 360 aa24.61■■□□□ 1.53
USP4-208ENST00000464168 LARSQ9P2J5 1176 aaKnown RBP24.61■■□□□ 1.53
USP4-208ENST00000464168 GTF3C5Q9Y5Q8 519 aaPredicted RBP24.61■■□□□ 1.53
USP4-208ENST00000464168 OR6C75A6NL08 312 aa24.6■■□□□ 1.53
USP4-208ENST00000464168 HEPACAM2A8MVW5 462 aa24.6■■□□□ 1.53
USP4-208ENST00000464168 H0YCG3 227 aa24.6■■□□□ 1.53
USP4-208ENST00000464168 ZNF263O14978 683 aa24.6■■□□□ 1.53
USP4-208ENST00000464168 FAM189A1O60320 539 aa24.6■■□□□ 1.53
USP4-208ENST00000464168 GPR17Q13304 367 aa24.6■■□□□ 1.53
USP4-208ENST00000464168 ENOX2Q16206 610 aaKnown RBP24.6■■□□□ 1.53
USP4-208ENST00000464168 USP37Q86T82 979 aa24.6■■□□□ 1.53
USP4-208ENST00000464168 TMC8Q8IU68 726 aa24.6■■□□□ 1.53
USP4-208ENST00000464168 GPR161Q8N6U8 529 aaKnown RBP24.6■■□□□ 1.53
USP4-208ENST00000464168 CDK5RAP3Q96JB5 506 aa24.6■■□□□ 1.53
USP4-208ENST00000464168 SLITRK6Q9H5Y7 841 aa24.6■■□□□ 1.53
USP4-208ENST00000464168 TPRP12270 2363 aaKnown RBP24.6■■□□□ 1.53
USP4-208ENST00000464168 PDCD11Q14690 1871 aaKnown RBP24.6■■□□□ 1.53
USP4-208ENST00000464168 ADRB2P07550 413 aa24.59■■□□□ 1.53
USP4-208ENST00000464168 PPP2R3AQ06190 1150 aa24.59■■□□□ 1.53
USP4-208ENST00000464168 ARL6IP4Q66PJ3 421 aaKnown RBP24.59■■□□□ 1.53
USP4-208ENST00000464168 DSTYKQ6XUX3 929 aa24.59■■□□□ 1.53
USP4-208ENST00000464168 SECISBP2LQ93073 1101 aaKnown RBP24.59■■□□□ 1.53
USP4-208ENST00000464168 IER2Q9BTL4 223 aa24.59■■□□□ 1.53
USP4-208ENST00000464168 KIF3AQ9Y496 699 aa24.59■■□□□ 1.53
USP4-208ENST00000464168 EPG5Q9HCE0 2579 aa24.59■■□□□ 1.53
USP4-208ENST00000464168 COL4A2P08572 1712 aa24.58■■□□□ 1.53
USP4-208ENST00000464168 A0A1W2PRU2 124 aa24.58■■□□□ 1.53
USP4-208ENST00000464168 PPEF2O14830 753 aa24.58■■□□□ 1.53
USP4-208ENST00000464168 CHRNB1P11230 501 aa24.58■■□□□ 1.53
USP4-208ENST00000464168 TGM1P22735 817 aa24.58■■□□□ 1.53
USP4-208ENST00000464168 CCNE1P24864 410 aa24.58■■□□□ 1.53
USP4-208ENST00000464168 LIG4P49917 911 aa24.58■■□□□ 1.53
USP4-208ENST00000464168 EPHB3P54753 998 aa24.58■■□□□ 1.53
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms